Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000443

Physical Location & Seq

Genomic Coordinates Forward (+)

28020085 .. 28030004

Gene Structure 9920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g35520.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAAATGCACATGCATGATTTTACCTGAGTTCCATGAGATCATATTGGTTCTTCTACTTCTTCAACTTGTTCTTCAGATAAGTCTTCTATTGCAGCTGACCTATTTTAAGGCCGTGAAGAAGGTGCTGCAACGGCAACTTGGAGATGAAGAAACCAAGAGCTTGCTTGAGAGAGCTGTTTACTTTATCAGCATTGGTAGCAATGACTATGGTAGCTTCTACGCCAATTTCCCCAACGCCAATGAGACCATCCGGCAAGAATTTGCAGCTAGTGTGATCAGCAAGTTAACCGTTGTGCTCCAAGAAATATATGATTTAGGAGGAAGGAATGTTGCATTTCAAAATGCGGGACCTATTGGTTGTCTACCGTCGACTAAGCAGGCCTACAACACTGAACTTATTGATGGGTGTGTTGAACAAATCGAGGGTTTAATAAGGCTACACAATACAGCTCTAGCTAATGCCCTCAAACAGTTGGAGAGCCAGAAGCCAGGTTTCAAGTACTCCGTTTTTGAGTATTATGATGTGATTGTGGATCGAATGCATAACCCTGCAAAATATGGTTTTACGGACGGCTCGGATGCGTGTTGTGGTGTCGGAGCATATTTGGGATCTGGTTGCGGTAATGAAACAAAAGGGTACGAGTTATGTAGTGACCCTGAGGACTATGTGTGGTTCGATGGTAGCCATACCACTGAAAAAGTAAATCTGCAATTAGCAGAACTAATATGGAGTGGAACACCAAATGTAACCGGACCTTACAATGTTAAACAACTTTTTGGACGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009409 GO:0009505 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009625 GO:0009628 GO:0009941 GO:0009987 GO:0016020 GO:0016143 GO:0016145 GO:0019748 GO:0019757 GO:0019759 GO:0019760 GO:0019762 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031967 GO:0031975 GO:0032991 GO:0042579 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0044237 GO:0044248 GO:0044273 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0071944 GO:0098542 GO:0098588 GO:0098805 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

264

Amino Acids

29.27

Weight (kDa)

5.07

Isoelectric Point (pI)

43.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	44 - 243	9.4e-18	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000443)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica	MD09G1175400.v1.1
pyrus_communis	pycom09g09260
rosa_chinensis	RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata	RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora	Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa	Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha	Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana	Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	364, 371
AciI	CCGC	2 cut(s)	347, 621
AclWI	GGATC	2 cut(s)	543, 619
AcsI	RAATTY	1 cut(s)	260
AcuI	CTGAAG	1 cut(s)	59
AfaI	GTAC	2 cut(s)	503, 641
AgsI	TTSAA	4 cut(s)	65, 341, 416, 499
AjnI	CCWGG	1 cut(s)	490
AluBI	AGCT	7 cut(s)	97, 162, 176, 216, 269, 452, 458
AluI	AGCT	7 cut(s)	97, 162, 176, 216, 269, 452, 458
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	1 cut(s)	239
AlwI	GGATC	2 cut(s)	543, 619
AoxI	GGCC	2 cut(s)	111, 381
ApeKI	GCWGC	3 cut(s)	94, 127, 266
ApoI	RAATTY	1 cut(s)	260
AspS9I	GGNCC	2 cut(s)	350, 755
AvaII	GGWCC	2 cut(s)	350, 755
AxyI	CCTNAGG	1 cut(s)	660
BbsI	GAAGAC	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	3 cut(s)	106, 114, 278
BccI	CCATC	3 cut(s)	257, 398, 674
BceAI	ACGGC	3 cut(s)	98, 149, 589
BciT130I	CCWGG	1 cut(s)	492
BclI	TGATCA	1 cut(s)	276
BcoDI	GTCTC	1 cut(s)	239
BfaI	CTAG	2 cut(s)	270, 455
BisI	GCNGC	3 cut(s)	95, 128, 267
BlsI	GCNGC	3 cut(s)	96, 129, 268
BmcAI	AGTACT	1 cut(s)	503
Bme1390I	CCNGG	1 cut(s)	492
Bme18I	GGWCC	2 cut(s)	350, 755
BmgT120I	GGNCC	2 cut(s)	350, 755
BmiI	GGNNCC	1 cut(s)	351
BmrFI	CCNGG	1 cut(s)	492
BmsI	GCATC	1 cut(s)	571
BpiI	GAAGAC	1 cut(s)	77
BpuEI	CTTGAG	1 cut(s)	188
BsaI	GGTCTC	1 cut(s)	239
BsaWI	WCCGGW	1 cut(s)	752
Bse21I	CCTNAGG	1 cut(s)	660
Bse3DI	GCAATG	1 cut(s)	208
BseBI	CCWGG	1 cut(s)	492
BseGI	GGATG	2 cut(s)	249, 586
BseMI	GCAATG	1 cut(s)	208
BseMII	CTCAG	2 cut(s)	18, 651
BseXI	GCAGC	3 cut(s)	106, 114, 278
BshFI	GGCC	2 cut(s)	113, 383
BsiHKAI	GWGCWC	1 cut(s)	300
BsiSI	CCGG	2 cut(s)	253, 753
BslFI	GGGAC	1 cut(s)	363
BsmAI	GTCTC	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	363
BsmI	GAATGC	1 cut(s)	546
BsnI	GGCC	2 cut(s)	113, 383
Bso31I	GGTCTC	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	4 cut(s)	39, 276, 535, 611
BspACI	CCGC	2 cut(s)	347, 621
BspANI	GGCC	2 cut(s)	113, 383
BspCNI	CTCAG	2 cut(s)	19, 652
BspLI	GGNNCC	1 cut(s)	351
BspPI	GGATC	2 cut(s)	543, 619
BspTNI	GGTCTC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	208
BssMI	GATC	4 cut(s)	39, 276, 535, 611
Bst2UI	CCWGG	1 cut(s)	492
Bst4CI	ACNGT	3 cut(s)	292, 369, 474
BstC8I	GCNNGC	2 cut(s)	164, 381
BstDEI	CTNAG	3 cut(s)	27, 375, 660
BstF5I	GGATG	2 cut(s)	249, 586
BstKTI	GATC	4 cut(s)	42, 279, 538, 614
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	4 cut(s)	39, 276, 535, 611
BstMWI	GCNNNNNNNGC	2 cut(s)	133, 198
BstNI	CCWGG	1 cut(s)	492
BstNSI	RCATGY	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	490
BstV1I	GCAGC	3 cut(s)	106, 114, 278
BstV2I	GAAGAC	1 cut(s)	77
BstX2I	RGATCY	1 cut(s)	611
BstYI	RGATCY	1 cut(s)	611
Bsu36I	CCTNAGG	1 cut(s)	660
BsuRI	GGCC	2 cut(s)	113, 383
BtsCI	GGATG	2 cut(s)	249, 586
BtsIMutI	CAGTG	2 cut(s)	390, 693
Cac8I	GCNNGC	2 cut(s)	164, 381
Cfr13I	GGNCC	2 cut(s)	350, 755
Csp6I	GTAC	2 cut(s)	502, 640
CviAII	CATG	3 cut(s)	12, 16, 35
CviQI	GTAC	2 cut(s)	502, 640
DdeI	CTNAG	3 cut(s)	27, 375, 660
DpnI	GATC	4 cut(s)	41, 278, 537, 613
DpnII	GATC	4 cut(s)	39, 276, 535, 611
Eco147I	AGGCCT	1 cut(s)	383
Eco31I	GGTCTC	1 cut(s)	239
Eco47I	GGWCC	2 cut(s)	350, 755
Eco57I	CTGAAG	1 cut(s)	59
Eco81I	CCTNAGG	1 cut(s)	660
EcoO109I	RGGNCCY	1 cut(s)	350
EcoRII	CCWGG	1 cut(s)	490
EcoT22I	ATGCAT	2 cut(s)	17, 546
FaeI	CATG	3 cut(s)	15, 19, 38
FaqI	GGGAC	1 cut(s)	363
FatI	CATG	3 cut(s)	11, 15, 34
FauI	CCCGC	1 cut(s)	340
FbaI	TGATCA	1 cut(s)	276
FblI	GTMKAC	2 cut(s)	364, 371
Fnu4HI	GCNGC	3 cut(s)	95, 128, 267
FokI	GGATG	2 cut(s)	236, 593
Fsp4HI	GCNGC	3 cut(s)	95, 128, 267
FspBI	CTAG	2 cut(s)	270, 455
GluI	GCNGC	3 cut(s)	95, 128, 267
HaeIII	GGCC	2 cut(s)	113, 383
HapII	CCGG	2 cut(s)	253, 753
Hin1II	CATG	3 cut(s)	15, 19, 38
HincII	GTYRAC	2 cut(s)	288, 372
HindII	GTYRAC	2 cut(s)	288, 372
HpaI	GTTAAC	1 cut(s)	288
HpaII	CCGG	2 cut(s)	253, 753
Hpy166II	GTNNAC	4 cut(s)	181, 288, 365, 372
Hpy188I	TCNGA	3 cut(s)	78, 580, 599
Hpy8I	GTNNAC	4 cut(s)	181, 288, 365, 372
Hpy99I	CGWCG	1 cut(s)	373
HpyAV	CCTTC	2 cut(s)	115, 318
HpyCH4III	ACNGT	3 cut(s)	292, 369, 474
HpyCH4V	TGCA	9 cut(s)	9, 15, 94, 130, 266, 335, 544, 554, 712
HpyF10VI	GCNNNNNNNGC	2 cut(s)	133, 198
HpyF3I	CTNAG	3 cut(s)	27, 375, 660
Hsp92II	CATG	3 cut(s)	15, 19, 38
Ksp22I	TGATCA	1 cut(s)	276
KspAI	GTTAAC	1 cut(s)	288
Kzo9I	GATC	4 cut(s)	39, 276, 535, 611
LmnI	GCTCC	2 cut(s)	303, 599
Lsp1109I	GCAGC	3 cut(s)	106, 114, 278
LweI	GCATC	1 cut(s)	571
MaeI	CTAG	2 cut(s)	270, 455
MaeIII	GTNAC	2 cut(s)	653, 748
MalI	GATC	4 cut(s)	41, 278, 537, 613
MboI	GATC	4 cut(s)	39, 276, 535, 611
MboII	GAAGA	6 cut(s)	44, 53, 65, 77, 130, 161
MflI	RGATCY	1 cut(s)	611
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	3 cut(s)	226, 260, 713
MmeI	TCCRAC	2 cut(s)	456, 577
MnlI	CCTC	4 cut(s)	314, 418, 476, 655
Mph1103I	ATGCAT	2 cut(s)	17, 546
MseI	TTAA	4 cut(s)	108, 287, 431, 768
MslI	CAYNNNNRTG	1 cut(s)	14
MspA1I	CMGCKG	1 cut(s)	97
MspI	CCGG	2 cut(s)	253, 753
MspR9I	CCNGG	1 cut(s)	492
Mva1269I	GAATGC	1 cut(s)	546
MvaI	CCWGG	1 cut(s)	492
MwoI	GCNNNNNNNGC	2 cut(s)	133, 198
NdeII	GATC	4 cut(s)	39, 276, 535, 611
NlaIII	CATG	3 cut(s)	15, 19, 38
NlaIV	GGNNCC	1 cut(s)	351
NmuCI	GTSAC	1 cut(s)	653
NsiI	ATGCAT	2 cut(s)	17, 546
NspI	RCATGY	1 cut(s)	15
PceI	AGGCCT	1 cut(s)	383
PctI	GAATGC	1 cut(s)	546
PkrI	GCNGC	3 cut(s)	96, 129, 268
PpuMI	RGGWCCY	1 cut(s)	350
Psp5II	RGGWCCY	1 cut(s)	350
Psp6I	CCWGG	1 cut(s)	490
PspGI	CCWGG	1 cut(s)	490
PspN4I	GGNNCC	1 cut(s)	351
PspPI	GGNCC	2 cut(s)	350, 755
PspPPI	RGGWCCY	1 cut(s)	350
PsuI	RGATCY	1 cut(s)	611
PvuII	CAGCTG	1 cut(s)	97
RsaI	GTAC	2 cut(s)	503, 641
RsaNI	GTAC	2 cut(s)	502, 640
RseI	CAYNNNNRTG	1 cut(s)	14
SalI	GTCGAC	1 cut(s)	370
SaqAI	TTAA	4 cut(s)	108, 287, 431, 768
SatI	GCNGC	3 cut(s)	95, 128, 267
Sau3AI	GATC	4 cut(s)	39, 276, 535, 611
Sau96I	GGNCC	2 cut(s)	350, 755
ScaI	AGTACT	1 cut(s)	503
ScrFI	CCNGG	1 cut(s)	492
SduI	GDGCHC	1 cut(s)	300
SfaNI	GCATC	1 cut(s)	571
SinI	GGWCC	2 cut(s)	350, 755
SmiMI	CAYNNNNRTG	1 cut(s)	14
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	3 cut(s)	226, 260, 713
SseBI	AGGCCT	1 cut(s)	383
SsiI	CCGC	2 cut(s)	347, 621
SspMI	CTAG	2 cut(s)	270, 455
StuI	AGGCCT	1 cut(s)	383
StyD4I	CCNGG	1 cut(s)	490
TaaI	ACNGT	3 cut(s)	292, 369, 474
TaqI	TCGA	4 cut(s)	371, 423, 538, 678
TasI	AATT	3 cut(s)	226, 260, 713
TatI	WGTACW	1 cut(s)	501
Tru1I	TTAA	4 cut(s)	108, 287, 431, 768
Tru9I	TTAA	4 cut(s)	108, 287, 431, 768
TscAI	CASTG	2 cut(s)	397, 700
TseFI	GTSAC	1 cut(s)	653
TseI	GCWGC	3 cut(s)	94, 127, 266
Tsp45I	GTSAC	1 cut(s)	653
TspDTI	ATGAA	3 cut(s)	17, 162, 642
TspGWI	ACGGA	2 cut(s)	496, 584
TspRI	CASTG	2 cut(s)	397, 700
VpaK11BI	GGWCC	2 cut(s)	350, 755
XapI	RAATTY	1 cut(s)	260
XceI	RCATGY	1 cut(s)	15
XmiI	GTMKAC	2 cut(s)	364, 371
XspI	CTAG	2 cut(s)	270, 455
ZrmI	AGTACT	1 cut(s)	503
Zsp2I	ATGCAT	2 cut(s)	17, 546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.