Rw2G037180

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
61255339 .. 61257844
2506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G037180.1

Sequence Viewer

Length: 1083 bp
ATGGCCAGCCTTAGCTACATTGTTTATGTGTTGGTAAGCCTTTTGAACCCAATTAGCTACCTTCTTTATGGTCATGATCAATTCAACTATAATCCTGCACACGATAATGAGGTACAAAAGAAGGCCTTGTTTGTGTTTGGAGACTCGCTGTTTGATCCTGGCAACGATCAATACCTCCCTAATGTTACCGTAGAAGATTACCCAGCAACAACCTGGCCATATGGAGAAACCTTCTTTCACCATCCCAACGGAAGACTTTCAGATGGCCGTATAGTCCCGGACTTCATCGCTAATTTTGCGAACTTGCGTATGCTTCCACCCTACCTGCAACCAGATCCAAAAGATTTTACTGATGGAGCCAGCTTTGCTTCAGCTGGAGCTGGAGTTCTAGTTGAAACTGATCCAGGAACTATAAACCTTCCATTGCAGTTAAGCTATTTTAAGAACGTGACGGAGTTGCTGCAAGAGCAACTGGGTGATGAAGAAGCCAAGAAGTTGCTGGGGAGCGCTGTGTACTTGATTAGCATGGGAGGCAATGATTATTTTACCTTCTACGCCAAATACCAAGAAAATGCCACCGAGTCCCTCCAGCAGGGATACATAGAAATTGTGATCGGCAACTTGACCACTGCGCTCCAAAGAATATACGACTTAGGGGGAAGGAAGATCGCATTTCAAAATGCCGGACCTCTTGGGTGCTTACCTCACGCAAAACAATCATACGATTCCCACCTTGTTCGTGGGTGCGTTGAAGGGCTCCAGAGTCTAGCGAGGCAGCACAACAAAGCTCTAGCTAGTGTCCTTAAAGAGCTAGAGAGCCAGCGACCGGGATTCAAATATTCAATATTTGAGTACTATGATGCACTCGGCGACCGAGTACTTAACCCCGCTAAATACGATAACCCAAATTCTGTCTGGTGCCTCATCAAATGCTTAATTGCATTCCTTCGTACCCTTGCTAGGTTTTATTTCCGATGTTTTGTTGCATCTAGTATTTCTCTTGTTATTTTATATCTTGATGTAGTTTTTACATCTATAAGTTGTAATTTTTTTTTATGTTTATTATTTTATATCTTGATGTAG

Protein Analysis

360

Amino Acids

40.5

Weight (kDa)

5.27

Isoelectric Point (pI)

39.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 43 - 287 3e-23 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000443)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica MD09G1175400.v1.1
pyrus_communis pycom09g09260
rosa_chinensis RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 333
AccB1I GGYRCC 1 cut(s) 918
AciI CCGC 1 cut(s) 888
AclWI GGATC 3 cut(s) 149, 329, 395
AcoI YGGCCR 3 cut(s) 3, 215, 265
AcsI RAATTY 1 cut(s) 907
AcuI CTGAAG 1 cut(s) 354
AfaI GTAC 5 cut(s) 114, 515, 854, 879, 952
AfeI AGCGCT 1 cut(s) 508
AfiI CCNNNNNNNGG 3 cut(s) 592, 826, 960
AgsI TTSAA 7 cut(s) 46, 85, 395, 677, 752, 835, 843
AjnI CCWGG 3 cut(s) 157, 212, 403
AloI GAACNNNNNNTCC 2 cut(s) 369, 401
AluBI AGCT 9 cut(s) 15, 57, 363, 374, 380, 435, 788, 794, 811
AluI AGCT 9 cut(s) 15, 57, 363, 374, 380, 435, 788, 794, 811
Alw26I GTCTC 1 cut(s) 135
AlwI GGATC 3 cut(s) 149, 329, 395
Aor51HI AGCGCT 1 cut(s) 508
AoxI GGCC 4 cut(s) 3, 123, 215, 265
ApeKI GCWGC 2 cut(s) 460, 775
ApoI RAATTY 1 cut(s) 907
ArsI GACNNNNNNTTYG 2 cut(s) 134, 166
Asp700I GAANNNNTTC 1 cut(s) 256
AspLEI GCGC 2 cut(s) 509, 634
AspS9I GGNCC 1 cut(s) 686
AsuC2I CCSGG 2 cut(s) 278, 828
AsuHPI GGTGA 2 cut(s) 230, 488
AvaII GGWCC 1 cut(s) 686
BalI TGGCCA 2 cut(s) 5, 217
BanI GGYRCC 1 cut(s) 918
BanII GRGCYC 1 cut(s) 759
BbsI GAAGAC 1 cut(s) 259
BbvI GCAGC 2 cut(s) 447, 787
BccI CCATC 3 cut(s) 249, 257, 347
BceAI ACGGC 1 cut(s) 252
BciT130I CCWGG 3 cut(s) 159, 214, 405
BciVI GTATCC 1 cut(s) 590
BclI TGATCA 1 cut(s) 76
BcnI CCSGG 2 cut(s) 278, 828
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 7 cut(s) 389, 767, 791, 795, 812, 960, 990
BfoI RGCGCY 1 cut(s) 510
BfuAI ACCTGC 1 cut(s) 333
BfuI GTATCC 1 cut(s) 590
BisI GCNGC 2 cut(s) 461, 776
BlsI GCNGC 2 cut(s) 462, 777
BmcAI AGTACT 2 cut(s) 854, 879
Bme1390I CCNGG 5 cut(s) 159, 214, 278, 405, 828
Bme18I GGWCC 1 cut(s) 686
BmgT120I GGNCC 1 cut(s) 686
BmiI GGNNCC 3 cut(s) 358, 758, 920
BmrFI CCNGG 5 cut(s) 159, 214, 278, 405, 828
BmrI ACTGGG 1 cut(s) 482
BmsI GCATC 2 cut(s) 850, 995
BmuI ACTGGG 1 cut(s) 482
BpiI GAAGAC 1 cut(s) 259
BpmI CTGGAG 4 cut(s) 396, 402, 572, 743
Bpu10I CCTNAGC 1 cut(s) 11
BpuMI CCSGG 2 cut(s) 278, 828
BsaXI ACNNNNNCTCC 4 cut(s) 369, 375, 399, 405
Bsc4I CCNNNNNNNGG 3 cut(s) 592, 826, 960
Bse1I ACTGG 1 cut(s) 477
Bse3DI GCAATG 2 cut(s) 422, 541
BseBI CCWGG 3 cut(s) 159, 214, 405
BseGI GGATG 1 cut(s) 241
BseLI CCNNNNNNNGG 3 cut(s) 592, 826, 960
BseMI GCAATG 2 cut(s) 422, 541
BseNI ACTGG 1 cut(s) 477
BseXI GCAGC 2 cut(s) 447, 787
BseYI CCCAGC 2 cut(s) 202, 499
BsgI GTGCAG 1 cut(s) 81
Bsh1285I CGRYCG 2 cut(s) 827, 874
BshFI GGCC 4 cut(s) 5, 125, 217, 267
BshNI GGYRCC 1 cut(s) 918
BsiEI CGRYCG 2 cut(s) 827, 874
BsiSI CCGG 3 cut(s) 278, 684, 827
BslFI GGGAC 2 cut(s) 260, 568
BslI CCNNNNNNNGG 3 cut(s) 592, 826, 960
BsmAI GTCTC 1 cut(s) 135
BsmFI GGGAC 2 cut(s) 260, 568
BsmI GAATGC 1 cut(s) 941
BsnI GGCC 4 cut(s) 5, 125, 217, 267
Bsp1286I GDGCHC 1 cut(s) 759
Bsp143I GATC 7 cut(s) 76, 154, 166, 334, 400, 612, 666
BspACI CCGC 1 cut(s) 888
BspANI GGCC 4 cut(s) 5, 125, 217, 267
BspHI TCATGA 1 cut(s) 73
BspLI GGNNCC 3 cut(s) 358, 758, 920
BspMI ACCTGC 1 cut(s) 333
BspPI GGATC 3 cut(s) 149, 329, 395
BspT107I GGYRCC 1 cut(s) 918
BsrDI GCAATG 2 cut(s) 422, 541
BsrI ACTGG 1 cut(s) 477
BssMI GATC 7 cut(s) 76, 154, 166, 334, 400, 612, 666
Bst2UI CCWGG 3 cut(s) 159, 214, 405
Bst4CI ACNGT 1 cut(s) 190
BstC8I GCNNGC 3 cut(s) 7, 361, 821
BstDEI CTNAG 2 cut(s) 11, 652
BstENI CCTNNNNNAGG 1 cut(s) 590
BstF5I GGATG 1 cut(s) 241
BstH2I RGCGCY 1 cut(s) 510
BstHHI GCGC 2 cut(s) 509, 634
BstKTI GATC 7 cut(s) 79, 157, 169, 337, 403, 615, 669
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 7 cut(s) 76, 154, 166, 334, 400, 612, 666
BstMCI CGRYCG 2 cut(s) 827, 874
BstMWI GCNNNNNNNGC 4 cut(s) 296, 365, 466, 531
BstNI CCWGG 3 cut(s) 159, 214, 405
BstSCI CCNGG 5 cut(s) 157, 212, 276, 403, 826
BstV1I GCAGC 2 cut(s) 447, 787
BstV2I GAAGAC 1 cut(s) 259
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
BsuI GTATCC 1 cut(s) 590
BsuRI GGCC 4 cut(s) 5, 125, 217, 267
BtgZI GCGATG 1 cut(s) 271
BtsCI GGATG 1 cut(s) 241
BtsI GCAGTG 1 cut(s) 627
BtsIMutI CAGTG 1 cut(s) 627
BveI ACCTGC 1 cut(s) 333
Cac8I GCNNGC 3 cut(s) 7, 361, 821
CciI TCATGA 1 cut(s) 73
CfoI GCGC 2 cut(s) 509, 634
Cfr13I GGNCC 1 cut(s) 686
Csp6I GTAC 5 cut(s) 113, 514, 853, 878, 951
CviAII CATG 2 cut(s) 74, 526
CviQI GTAC 5 cut(s) 113, 514, 853, 878, 951
DdeI CTNAG 2 cut(s) 11, 652
DpnI GATC 7 cut(s) 78, 156, 168, 336, 402, 614, 668
DpnII GATC 7 cut(s) 76, 154, 166, 334, 400, 612, 666
EaeI YGGCCR 3 cut(s) 3, 215, 265
Eco147I AGGCCT 1 cut(s) 125
Eco24I GRGCYC 1 cut(s) 759
Eco47I GGWCC 1 cut(s) 686
Eco47III AGCGCT 1 cut(s) 508
Eco57I CTGAAG 1 cut(s) 354
EcoNI CCTNNNNNAGG 1 cut(s) 590
EcoRII CCWGG 3 cut(s) 157, 212, 403
EcoT38I GRGCYC 1 cut(s) 759
FaeI CATG 2 cut(s) 77, 529
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FaqI GGGAC 2 cut(s) 260, 568
FatI CATG 2 cut(s) 73, 525
FauI CCCGC 1 cut(s) 895
FauNDI CATATG 1 cut(s) 220
FbaI TGATCA 1 cut(s) 76
Fnu4HI GCNGC 2 cut(s) 461, 776
FokI GGATG 1 cut(s) 228
FriOI GRGCYC 1 cut(s) 759
Fsp4HI GCNGC 2 cut(s) 461, 776
FspBI CTAG 7 cut(s) 389, 767, 791, 795, 812, 960, 990
GlaI GCGC 2 cut(s) 508, 633
GluI GCNGC 2 cut(s) 461, 776
GsaI CCCAGC 2 cut(s) 206, 503
GsuI CTGGAG 4 cut(s) 396, 402, 572, 743
HaeII RGCGCY 1 cut(s) 510
HaeIII GGCC 4 cut(s) 5, 125, 217, 267
HapII CCGG 3 cut(s) 278, 684, 827
HhaI GCGC 2 cut(s) 509, 634
Hin1II CATG 2 cut(s) 77, 529
Hin6I GCGC 2 cut(s) 507, 632
HinP1I GCGC 2 cut(s) 507, 632
HinfI GANTC 5 cut(s) 143, 581, 725, 763, 831
HpaII CCGG 3 cut(s) 278, 684, 827
HphI GGTGA 2 cut(s) 230, 488
Hpy166II GTNNAC 1 cut(s) 514
Hpy188I TCNGA 2 cut(s) 262, 974
Hpy188III TCNNGA 4 cut(s) 74, 760, 1016, 1075
Hpy8I GTNNAC 1 cut(s) 514
HpyAV CCTTC 8 cut(s) 71, 115, 241, 428, 559, 654, 746, 956
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4IV ACGT 1 cut(s) 447
HpyCH4V TGCA 7 cut(s) 98, 328, 427, 463, 863, 941, 986
HpyF10VI GCNNNNNNNGC 4 cut(s) 296, 365, 466, 531
HpyF3I CTNAG 2 cut(s) 11, 652
HpySE526I ACGT 1 cut(s) 447
Hsp92II CATG 2 cut(s) 77, 529
HspAI GCGC 2 cut(s) 507, 632
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 7 cut(s) 76, 154, 166, 334, 400, 612, 666
LmnI GCTCC 5 cut(s) 356, 377, 504, 639, 762
Lsp1109I GCAGC 2 cut(s) 447, 787
LweI GCATC 2 cut(s) 850, 995
MaeI CTAG 7 cut(s) 389, 767, 791, 795, 812, 960, 990
MaeII ACGT 1 cut(s) 447
MaeIII GTNAC 2 cut(s) 184, 448
MalI GATC 7 cut(s) 78, 156, 168, 336, 402, 614, 668
MboI GATC 7 cut(s) 76, 154, 166, 334, 400, 612, 666
MboII GAAGA 4 cut(s) 206, 264, 494, 676
MflI RGATCY 1 cut(s) 334
MhlI GDGCHC 1 cut(s) 759
MlsI TGGCCA 2 cut(s) 5, 217
MluCI AATT 7 cut(s) 51, 80, 292, 606, 907, 936, 1045
MluNI TGGCCA 2 cut(s) 5, 217
MlyI GAGTC 3 cut(s) 137, 590, 772
MnlI CCTC 8 cut(s) 103, 185, 524, 596, 699, 714, 765, 932
Mox20I TGGCCA 2 cut(s) 5, 217
MroXI GAANNNNTTC 1 cut(s) 256
MscI TGGCCA 2 cut(s) 5, 217
MseI TTAA 5 cut(s) 431, 441, 804, 882, 935
MslI CAYNNNNRTG 1 cut(s) 105
Msp20I TGGCCA 2 cut(s) 5, 217
MspA1I CMGCKG 1 cut(s) 374
MspI CCGG 3 cut(s) 278, 684, 827
MspR9I CCNGG 5 cut(s) 159, 214, 278, 405, 828
Mva1269I GAATGC 1 cut(s) 941
MvaI CCWGG 3 cut(s) 159, 214, 405
MwoI GCNNNNNNNGC 4 cut(s) 296, 365, 466, 531
NciI CCSGG 2 cut(s) 278, 828
NdeI CATATG 1 cut(s) 220
NdeII GATC 7 cut(s) 76, 154, 166, 334, 400, 612, 666
NlaIII CATG 2 cut(s) 77, 529
NlaIV GGNNCC 3 cut(s) 358, 758, 920
NmeAIII GCCGAG 1 cut(s) 846
NmuCI GTSAC 1 cut(s) 448
PagI TCATGA 1 cut(s) 73
PceI AGGCCT 1 cut(s) 125
PctI GAATGC 1 cut(s) 941
PdmI GAANNNNTTC 1 cut(s) 256
PfeI GAWTC 2 cut(s) 725, 831
PfoI TCCNGGA 2 cut(s) 276, 403
PkrI GCNGC 2 cut(s) 462, 777
PleI GAGTC 3 cut(s) 137, 589, 771
PpsI GAGTC 3 cut(s) 137, 589, 771
Psp6I CCWGG 3 cut(s) 157, 212, 403
PspFI CCCAGC 2 cut(s) 202, 499
PspGI CCWGG 3 cut(s) 157, 212, 403
PspN4I GGNNCC 3 cut(s) 358, 758, 920
PspPI GGNCC 1 cut(s) 686
PsuI RGATCY 1 cut(s) 334
PvuII CAGCTG 1 cut(s) 374
RsaI GTAC 5 cut(s) 114, 515, 854, 879, 952
RsaNI GTAC 5 cut(s) 113, 514, 853, 878, 951
RseI CAYNNNNRTG 1 cut(s) 105
SaqAI TTAA 5 cut(s) 431, 441, 804, 882, 935
SatI GCNGC 2 cut(s) 461, 776
Sau3AI GATC 7 cut(s) 76, 154, 166, 334, 400, 612, 666
Sau96I GGNCC 1 cut(s) 686
ScaI AGTACT 2 cut(s) 854, 879
SchI GAGTC 3 cut(s) 137, 590, 772
ScrFI CCNGG 5 cut(s) 159, 214, 278, 405, 828
SduI GDGCHC 1 cut(s) 759
SfaNI GCATC 2 cut(s) 850, 995
SinI GGWCC 1 cut(s) 686
SmiMI CAYNNNNRTG 1 cut(s) 105
Sse9I AATT 7 cut(s) 51, 80, 292, 606, 907, 936, 1045
SseBI AGGCCT 1 cut(s) 125
SsiI CCGC 1 cut(s) 888
SspI AATATT 2 cut(s) 839, 846
SspMI CTAG 7 cut(s) 389, 767, 791, 795, 812, 960, 990
StuI AGGCCT 1 cut(s) 125
StyD4I CCNGG 5 cut(s) 157, 212, 276, 403, 826
TaaI ACNGT 1 cut(s) 190
TaiI ACGT 1 cut(s) 450
TaqII GACCGA 1 cut(s) 888
TasI AATT 7 cut(s) 51, 80, 292, 606, 907, 936, 1045
TatI WGTACW 3 cut(s) 513, 852, 877
TfiI GAWTC 2 cut(s) 725, 831
Tru1I TTAA 5 cut(s) 431, 441, 804, 882, 935
Tru9I TTAA 5 cut(s) 431, 441, 804, 882, 935
TscAI CASTG 1 cut(s) 634
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 2 cut(s) 460, 775
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 2 cut(s) 274, 495
TspGWI ACGGA 2 cut(s) 264, 467
TspRI CASTG 1 cut(s) 634
VpaK11BI GGWCC 1 cut(s) 686
XagI CCTNNNNNAGG 1 cut(s) 590
XapI RAATTY 1 cut(s) 907
XcmI CCANNNNNNNNNTGG 4 cut(s) 210, 496, 737, 912
XmnI GAANNNNTTC 1 cut(s) 256
XspI CTAG 7 cut(s) 389, 767, 791, 795, 812, 960, 990
ZrmI AGTACT 2 cut(s) 854, 879
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.