Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000443

Physical Location & Seq

Genomic Coordinates Reverse (-)

64719367 .. 64721672

Gene Structure 2306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51672

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGCCAGTCTTGGATACCTTTACTCTCTGTTACTAACCCTCGTCAATTTCGACCCAGTAAGCTTCTCTCCCCACCGATCCACACCAGAAGCAAACCACAAGGCCCTGTTTGTGTTTGGTGATTCACTCTTTGATGCCGGAAACAACCAATACCTGAATGCTAGTGTGGAAGGATCAGCAGTTATCTGGCCATATGGGGAAACCTACTTCGACCATCCCACTGGTCGAATCTCCGATGGCCGCATTGTCCCGGATTTTATTGCTCAGTTTGCAAATCTTCCTTTGCCACCACCATACCTGGAACCTGGTGCTCATCAATTCAGTGATGGAACCAACTTTGCTTCTGCCGGAGCTGGTGTTCTGCCTGAAACTCAACCCGGAACGATAGATCTTCCAAGTCAGTTGAGCAATTTTAGGGACATGAAGAAGTCACTGCATCAGAAATTGGGTGACAAAGAGGTTAAGAAGTTGCTGGGGAGAGCTGTTTATTTCTTCAGCATTGGAGGAAATGATTACATTAACCTCTTTTCCCAACAGCCAAAAGCTCCTCATAGCTACAAGAGGCAATATGTAGCAATGGTGATCAGGAACTTGACCATTGTGCTCAAAGAAATATATGATTTAGGAGGAAGGAAAATTGCATTTCAGAATGTGGCACCTCTGGGCTGCATACCTGCAGTGAAATCAGGAAATCCTGATGTTGGTAGTAAATGTCTTGAAGAACCATTAAAGCTGGCCAGACTACATAACAGAGCTCTTTCTACTGCCCTCAAGAAGTTAGAGAACCACTTACCAGGATTCAAGTACTCAATATTTGATTACTATAATGCACTTGGGGACAGAGTTAACGATCCTTCAAAATATGGCTTCAAGAATGGGACATCTGCTTGTTGTGGTAGTGGGGCATTTAGAGGGTCTAATTGTGGGACAGAACCATACGAGTTATGCAGCAACGCCAGTGAGTATGTGTGGTTTGATGGTGGTCATACAACTGAAAGTGCCAACCTCCAACTGGCTGAGCTAATATGGAGTGGACCTTCAAATGTGACCGGGCCTTACACTATGAAACAGCTATTTGAACAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005911 GO:0006810 GO:0006886 GO:0006996 GO:0007029 GO:0008104 GO:0008150 GO:0009506 GO:0009705 GO:0009987 GO:0010168 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0030054 GO:0031090 GO:0032527 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

362

Amino Acids

39.73

Weight (kDa)

6.75

Isoelectric Point (pI)

28.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	36 - 342	2.4e-30	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000443)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica	MD09G1175400.v1.1
pyrus_communis	pycom09g09260
rosa_chinensis	RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata	RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora	Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa	Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha	Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana	Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	682
AccB1I	GGYRCC	1 cut(s)	655
AciI	CCGC	1 cut(s)	241
AclWI	GGATC	3 cut(s)	72, 181, 845
AcoI	YGGCCR	4 cut(s)	3, 188, 238, 735
AcuI	CTGAAG	1 cut(s)	478
AfaI	GTAC	1 cut(s)	806
AfiI	CCNNNNNNNGG	2 cut(s)	701, 1012
AgsI	TTSAA	6 cut(s)	719, 802, 858, 871, 1041, 1079
AjnI	CCWGG	3 cut(s)	297, 304, 793
AloI	GAACNNNNNNTCC	2 cut(s)	342, 374
AluBI	AGCT	9 cut(s)	63, 353, 482, 545, 555, 733, 755, 1021, 1072
AluI	AGCT	9 cut(s)	63, 353, 482, 545, 555, 733, 755, 1021, 1072
Alw21I	GWGCWC	3 cut(s)	313, 606, 757
AlwI	GGATC	3 cut(s)	72, 181, 845
AoxI	GGCC	6 cut(s)	3, 102, 188, 238, 735, 1052
ApeKI	GCWGC	2 cut(s)	666, 948
AspS9I	GGNCC	3 cut(s)	103, 1034, 1052
AsuC2I	CCSGG	3 cut(s)	251, 378, 1051
AsuHPI	GGTGA	3 cut(s)	131, 461, 592
AvaII	GGWCC	1 cut(s)	1034
BalI	TGGCCA	3 cut(s)	5, 190, 737
BanI	GGYRCC	1 cut(s)	655
BanII	GRGCYC	1 cut(s)	757
Bbv12I	GWGCWC	3 cut(s)	313, 606, 757
BbvI	GCAGC	2 cut(s)	653, 960
BccI	CCATC	4 cut(s)	222, 230, 320, 971
BciT130I	CCWGG	3 cut(s)	299, 306, 795
BciVI	GTATCC	1 cut(s)	8
BclI	TGATCA	1 cut(s)	582
BcnI	CCSGG	3 cut(s)	251, 378, 1051
BfaI	CTAG	1 cut(s)	162
BfmI	CTRYAG	1 cut(s)	675
BfuAI	ACCTGC	1 cut(s)	682
BfuI	GTATCC	1 cut(s)	8
BglII	AGATCT	1 cut(s)	388
BisI	GCNGC	3 cut(s)	241, 667, 949
BlpI	GCTNAGC	1 cut(s)	1017
BlsI	GCNGC	3 cut(s)	242, 668, 950
BmcAI	AGTACT	1 cut(s)	806
Bme1390I	CCNGG	6 cut(s)	251, 299, 306, 378, 795, 1051
Bme18I	GGWCC	1 cut(s)	1034
BmgT120I	GGNCC	3 cut(s)	103, 1034, 1052
BmiI	GGNNCC	3 cut(s)	303, 331, 657
BmrFI	CCNGG	6 cut(s)	251, 299, 306, 378, 795, 1051
BmrI	ACTGGG	1 cut(s)	50
BmsI	GCATC	2 cut(s)	124, 445
BmuI	ACTGGG	1 cut(s)	50
Bpu1102I	GCTNAGC	1 cut(s)	1017
BpuEI	CTTGAG	1 cut(s)	755
BpuMI	CCSGG	3 cut(s)	251, 378, 1051
BsaXI	ACNNNNNCTCC	2 cut(s)	342, 372
Bsc4I	CCNNNNNNNGG	2 cut(s)	701, 1012
Bse1I	ACTGG	5 cut(s)	6, 56, 226, 957, 1017
Bse3DI	GCAATG	1 cut(s)	582
BseBI	CCWGG	3 cut(s)	299, 306, 795
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	2 cut(s)	701, 1012
BseMI	GCAATG	1 cut(s)	582
BseMII	CTCAG	2 cut(s)	278, 1008
BseNI	ACTGG	5 cut(s)	6, 56, 226, 957, 1017
BseRI	GAGGAG	1 cut(s)	537
BseXI	GCAGC	2 cut(s)	653, 960
BseYI	CCCAGC	1 cut(s)	472
BshFI	GGCC	6 cut(s)	5, 104, 190, 240, 737, 1054
BshNI	GGYRCC	1 cut(s)	655
BsiHKAI	GWGCWC	3 cut(s)	313, 606, 757
BsiSI	CCGG	5 cut(s)	138, 251, 348, 378, 1050
BslFI	GGGAC	5 cut(s)	233, 431, 851, 892, 940
BslI	CCNNNNNNNGG	2 cut(s)	701, 1012
BsmFI	GGGAC	5 cut(s)	233, 431, 851, 892, 940
BsmI	GAATGC	1 cut(s)	163
BsnI	GGCC	6 cut(s)	5, 104, 190, 240, 737, 1054
Bsp1286I	GDGCHC	3 cut(s)	313, 606, 757
Bsp143I	GATC	5 cut(s)	77, 173, 388, 582, 850
Bsp1720I	GCTNAGC	1 cut(s)	1017
BspACI	CCGC	1 cut(s)	241
BspANI	GGCC	6 cut(s)	5, 104, 190, 240, 737, 1054
BspCNI	CTCAG	2 cut(s)	277, 1009
BspLI	GGNNCC	3 cut(s)	303, 331, 657
BspMAI	CTGCAG	1 cut(s)	679
BspMI	ACCTGC	1 cut(s)	682
BspPI	GGATC	3 cut(s)	72, 181, 845
BspT107I	GGYRCC	1 cut(s)	655
BsrDI	GCAATG	1 cut(s)	582
BsrI	ACTGG	5 cut(s)	6, 56, 226, 957, 1017
BssMI	GATC	5 cut(s)	77, 173, 388, 582, 850
Bst2UI	CCWGG	3 cut(s)	299, 306, 795
BstC8I	GCNNGC	1 cut(s)	735
BstDEI	CTNAG	2 cut(s)	264, 1017
BstF5I	GGATG	1 cut(s)	214
BstKTI	GATC	5 cut(s)	80, 176, 391, 585, 853
BstMBI	GATC	5 cut(s)	77, 173, 388, 582, 850
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNI	CCWGG	3 cut(s)	299, 306, 795
BstSCI	CCNGG	6 cut(s)	249, 297, 304, 376, 793, 1049
BstSFI	CTRYAG	1 cut(s)	675
BstV1I	GCAGC	2 cut(s)	653, 960
BstX2I	RGATCY	1 cut(s)	388
BstXI	CCANNNNNNTGG	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	388
BsuI	GTATCC	1 cut(s)	8
BsuRI	GGCC	6 cut(s)	5, 104, 190, 240, 737, 1054
BtsCI	GGATG	1 cut(s)	214
BtsI	GCAGTG	2 cut(s)	431, 684
BtsIMutI	CAGTG	5 cut(s)	219, 328, 431, 684, 964
BveI	ACCTGC	1 cut(s)	682
Cac8I	GCNNGC	1 cut(s)	735
Cfr13I	GGNCC	3 cut(s)	103, 1034, 1052
CsiI	ACCWGGT	1 cut(s)	304
Csp6I	GTAC	1 cut(s)	805
CviAII	CATG	1 cut(s)	421
CviQI	GTAC	1 cut(s)	805
DdeI	CTNAG	2 cut(s)	264, 1017
DpnI	GATC	5 cut(s)	79, 175, 390, 584, 852
DpnII	GATC	5 cut(s)	77, 173, 388, 582, 850
EaeI	YGGCCR	4 cut(s)	3, 188, 238, 735
Ecl136II	GAGCTC	1 cut(s)	755
Eco24I	GRGCYC	1 cut(s)	757
Eco47I	GGWCC	1 cut(s)	1034
Eco53kI	GAGCTC	1 cut(s)	755
Eco57I	CTGAAG	1 cut(s)	478
EcoICRI	GAGCTC	1 cut(s)	755
EcoO109I	RGGNCCY	1 cut(s)	103
EcoRII	CCWGG	3 cut(s)	297, 304, 793
EcoT38I	GRGCYC	1 cut(s)	757
FaeI	CATG	1 cut(s)	424
FaqI	GGGAC	5 cut(s)	233, 431, 851, 892, 940
FatI	CATG	1 cut(s)	420
FauNDI	CATATG	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	582
Fnu4HI	GCNGC	3 cut(s)	241, 667, 949
FokI	GGATG	1 cut(s)	201
FriOI	GRGCYC	1 cut(s)	757
Fsp4HI	GCNGC	3 cut(s)	241, 667, 949
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	3 cut(s)	241, 667, 949
GsaI	CCCAGC	1 cut(s)	476
HaeIII	GGCC	6 cut(s)	5, 104, 190, 240, 737, 1054
HapII	CCGG	5 cut(s)	138, 251, 348, 378, 1050
Hin1II	CATG	1 cut(s)	424
HincII	GTYRAC	1 cut(s)	847
HindII	GTYRAC	1 cut(s)	847
HindIII	AAGCTT	1 cut(s)	61
HinfI	GANTC	3 cut(s)	122, 228, 798
HpaI	GTTAAC	1 cut(s)	847
HpaII	CCGG	5 cut(s)	138, 251, 348, 378, 1050
HphI	GGTGA	3 cut(s)	131, 461, 592
Hpy166II	GTNNAC	2 cut(s)	847, 1034
Hpy188I	TCNGA	3 cut(s)	235, 441, 648
Hpy188III	TCNNGA	7 cut(s)	586, 687, 695, 716, 772, 871, 1086
Hpy8I	GTNNAC	2 cut(s)	847, 1034
HpyAV	CCTTC	4 cut(s)	164, 624, 864, 1047
HpyCH4V	TGCA	7 cut(s)	272, 436, 641, 669, 677, 830, 948
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	2 cut(s)	264, 1017
Hsp92II	CATG	1 cut(s)	424
Ksp22I	TGATCA	1 cut(s)	582
KspAI	GTTAAC	1 cut(s)	847
Kzo9I	GATC	5 cut(s)	77, 173, 388, 582, 850
LmnI	GCTCC	2 cut(s)	350, 550
Lsp1109I	GCAGC	2 cut(s)	653, 960
LweI	GCATC	2 cut(s)	124, 445
MabI	ACCWGGT	1 cut(s)	304
MaeI	CTAG	1 cut(s)	162
MaeIII	GTNAC	4 cut(s)	30, 429, 449, 1045
MalI	GATC	5 cut(s)	79, 175, 390, 584, 852
MboI	GATC	5 cut(s)	77, 173, 388, 582, 850
MboII	GAAGA	5 cut(s)	269, 383, 436, 484, 731
MflI	RGATCY	1 cut(s)	388
MhlI	GDGCHC	3 cut(s)	313, 606, 757
MlsI	TGGCCA	3 cut(s)	5, 190, 737
MluCI	AATT	6 cut(s)	46, 317, 409, 443, 636, 919
MluNI	TGGCCA	3 cut(s)	5, 190, 737
MmeI	TCCRAC	1 cut(s)	1033
Mox20I	TGGCCA	3 cut(s)	5, 190, 737
MscI	TGGCCA	3 cut(s)	5, 190, 737
MseI	TTAA	4 cut(s)	462, 519, 728, 846
Msp20I	TGGCCA	3 cut(s)	5, 190, 737
MspI	CCGG	5 cut(s)	138, 251, 348, 378, 1050
MspR9I	CCNGG	6 cut(s)	251, 299, 306, 378, 795, 1051
Mva1269I	GAATGC	1 cut(s)	163
MvaI	CCWGG	3 cut(s)	299, 306, 795
MwoI	GCNNNNNNNGC	1 cut(s)	269
NciI	CCSGG	3 cut(s)	251, 378, 1051
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	5 cut(s)	77, 173, 388, 582, 850
NlaIII	CATG	1 cut(s)	424
NlaIV	GGNNCC	3 cut(s)	303, 331, 657
NmuCI	GTSAC	3 cut(s)	429, 449, 1045
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PctI	GAATGC	1 cut(s)	163
PfeI	GAWTC	3 cut(s)	122, 228, 798
PfoI	TCCNGGA	1 cut(s)	249
PkrI	GCNGC	3 cut(s)	242, 668, 950
Psp124BI	GAGCTC	1 cut(s)	757
Psp6I	CCWGG	3 cut(s)	297, 304, 793
PspFI	CCCAGC	1 cut(s)	472
PspGI	CCWGG	3 cut(s)	297, 304, 793
PspN4I	GGNNCC	3 cut(s)	303, 331, 657
PspPI	GGNCC	3 cut(s)	103, 1034, 1052
PstI	CTGCAG	1 cut(s)	679
PsuI	RGATCY	1 cut(s)	388
RsaI	GTAC	1 cut(s)	806
RsaNI	GTAC	1 cut(s)	805
SacI	GAGCTC	1 cut(s)	757
SaqAI	TTAA	4 cut(s)	462, 519, 728, 846
SatI	GCNGC	3 cut(s)	241, 667, 949
Sau3AI	GATC	5 cut(s)	77, 173, 388, 582, 850
Sau96I	GGNCC	3 cut(s)	103, 1034, 1052
ScaI	AGTACT	1 cut(s)	806
ScrFI	CCNGG	6 cut(s)	251, 299, 306, 378, 795, 1051
SduI	GDGCHC	3 cut(s)	313, 606, 757
SexAI	ACCWGGT	1 cut(s)	304
SfaNI	GCATC	2 cut(s)	124, 445
SfcI	CTRYAG	1 cut(s)	675
SinI	GGWCC	1 cut(s)	1034
SmlI	CTYRAG	1 cut(s)	770
SmoI	CTYRAG	1 cut(s)	770
Sse9I	AATT	6 cut(s)	46, 317, 409, 443, 636, 919
SsiI	CCGC	1 cut(s)	241
SspI	AATATT	1 cut(s)	813
SspMI	CTAG	1 cut(s)	162
SstI	GAGCTC	1 cut(s)	757
StyD4I	CCNGG	6 cut(s)	249, 297, 304, 376, 793, 1049
TaqI	TCGA	3 cut(s)	51, 210, 226
TasI	AATT	6 cut(s)	46, 317, 409, 443, 636, 919
TatI	WGTACW	1 cut(s)	804
TauI	GCSGC	1 cut(s)	243
TfiI	GAWTC	3 cut(s)	122, 228, 798
Tru1I	TTAA	4 cut(s)	462, 519, 728, 846
Tru9I	TTAA	4 cut(s)	462, 519, 728, 846
TscAI	CASTG	5 cut(s)	226, 328, 438, 684, 964
TseFI	GTSAC	3 cut(s)	429, 449, 1045
TseI	GCWGC	2 cut(s)	666, 948
Tsp45I	GTSAC	3 cut(s)	429, 449, 1045
TspDTI	ATGAA	2 cut(s)	437, 1079
TspRI	CASTG	5 cut(s)	226, 328, 438, 684, 964
VpaK11BI	GGWCC	1 cut(s)	1034
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1009
XspI	CTAG	1 cut(s)	162
ZrmI	AGTACT	1 cut(s)	806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.