RLG00000020246

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
62798371 .. 62800595
2225 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020246

Sequence Viewer

Length: 858 bp
ATGGAACGAGTGCCTAAGTTTGCAAACTTGCGTATGCTTCCACCCTACCTGCAACCAGATCCAAAAAATTTTACTGATGGAGCCAGCTTTGCTTCAGCTGGAGCTGGAGTTCTAGTTGAAACTGATCCAGGAACTATAAACCTTCCATTGCAGTTAAGCTATTTTAAGAATGTGACGGAGTTGCTGCAAGAGCAGCTGGGTGATGAAGAAGCCAAGAAGTTGCTGGGGAGCGCTGTGTACTTGATTAGCATGGGAGGCAATGATTATTTTACCTTCTACGCCAAATACCAAGAAAATGCCACCGAGTCCCTCCAGCAGGAATACATAGAAATTGTGATCGGCAACTTGACCACTGTGCTCCAAGGAATATACGACTTAGGGGGAAGGAAAGTCGCATTTCAAAATGCTGGACCTCTTGGGTGCTTACCATCCGCAAAACAATCATACGATTCTCACCTTGTTCATGGGTGCGTTGAAGGGCTCCAGAGTCTAGCGAGGCAGCACAACAAAGCTCTAGCTAGTGTCCTCAAAGAGCTAGAGAGCCAGCTACCGGGATTCAAATATTCAATATTTGAGTATTATGACGCACTTGGCGACCGAGTACTTAACCCCGCTAAATACGGCTTTAAGGATGGGACAGATGCGTGTTGCGGTAGAGGGGCATACAGAGGTTCTGATTGCGGTGGGCTTAATGGAACAGTAGCATATGAGTTATGCAGTAACCCTGCTGACAGTGTGTGGTTTGATGGTAGTCATACATCTGAAAGGGCAAACCTGCAGTTAGCTCAGCTGATATGGAGCGGAACACCAAATGTGACGGGGCCTTACAATGCCAAACAGCTTTTTGAACAAGAATGA

Protein Analysis

286

Amino Acids

31.13

Weight (kDa)

4.94

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 7 - 265 8.1e-22 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000443)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica MD09G1175400.v1.1
pyrus_communis pycom09g09260
rosa_chinensis RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 57, 783
AccBSI CCGCTC 1 cut(s) 801
AciI CCGC 5 cut(s) 432, 612, 651, 681, 801
AclWI GGATC 2 cut(s) 53, 119
AcsI RAATTY 1 cut(s) 67
AcuI CTGAAG 1 cut(s) 78
AfaI GTAC 2 cut(s) 239, 603
AfeI AGCGCT 1 cut(s) 232
AfiI CCNNNNNNNGG 2 cut(s) 316, 550
AgsI TTSAA 6 cut(s) 119, 401, 476, 559, 567, 848
AjnI CCWGG 1 cut(s) 127
AloI GAACNNNNNNTCC 2 cut(s) 93, 125
Alw21I GWGCWC 1 cut(s) 360
AlwI GGATC 2 cut(s) 53, 119
Aor51HI AGCGCT 1 cut(s) 232
AoxI GGCC 1 cut(s) 821
ApeKI GCWGC 3 cut(s) 184, 193, 499
ApoI RAATTY 1 cut(s) 67
AspLEI GCGC 1 cut(s) 233
AspS9I GGNCC 2 cut(s) 410, 821
AsuC2I CCSGG 1 cut(s) 552
AsuHPI GGTGA 2 cut(s) 212, 446
AvaII GGWCC 1 cut(s) 410
BanII GRGCYC 1 cut(s) 483
Bbv12I GWGCWC 1 cut(s) 360
BbvI GCAGC 3 cut(s) 171, 205, 511
BccI CCATC 4 cut(s) 71, 436, 626, 740
BceAI ACGGC 1 cut(s) 637
BciT130I CCWGG 1 cut(s) 129
BcnI CCSGG 1 cut(s) 552
BfaI CTAG 5 cut(s) 113, 491, 515, 519, 536
BfmI CTRYAG 1 cut(s) 776
BfoI RGCGCY 1 cut(s) 234
BfuAI ACCTGC 2 cut(s) 57, 783
BisI GCNGC 3 cut(s) 185, 194, 500
BlpI GCTNAGC 1 cut(s) 786
BlsI GCNGC 3 cut(s) 186, 195, 501
BmcAI AGTACT 1 cut(s) 603
Bme1390I CCNGG 2 cut(s) 129, 552
Bme18I GGWCC 1 cut(s) 410
BmgT120I GGNCC 2 cut(s) 410, 821
BmiI GGNNCC 3 cut(s) 82, 482, 822
BmrFI CCNGG 2 cut(s) 129, 552
BmsI GCATC 1 cut(s) 631
BpmI CTGGAG 4 cut(s) 120, 126, 296, 467
Bpu1102I GCTNAGC 1 cut(s) 786
BpuMI CCSGG 1 cut(s) 552
BsaJI CCNNGG 1 cut(s) 361
BsaXI ACNNNNNCTCC 4 cut(s) 93, 99, 123, 129
Bsc4I CCNNNNNNNGG 2 cut(s) 316, 550
Bse3DI GCAATG 2 cut(s) 146, 265
BseBI CCWGG 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 361
BseGI GGATG 2 cut(s) 428, 637
BseLI CCNNNNNNNGG 2 cut(s) 316, 550
BseMI GCAATG 2 cut(s) 146, 265
BseMII CTCAG 1 cut(s) 800
BseXI GCAGC 3 cut(s) 171, 205, 511
BseYI CCCAGC 2 cut(s) 196, 223
Bsh1285I CGRYCG 1 cut(s) 598
BshFI GGCC 1 cut(s) 823
BsiEI CGRYCG 1 cut(s) 598
BsiHKAI GWGCWC 1 cut(s) 360
BsiSI CCGG 1 cut(s) 551
BslFI GGGAC 2 cut(s) 292, 649
BslI CCNNNNNNNGG 2 cut(s) 316, 550
BsmFI GGGAC 2 cut(s) 292, 649
BsnI GGCC 1 cut(s) 823
Bsp1286I GDGCHC 2 cut(s) 360, 483
Bsp143I GATC 3 cut(s) 58, 124, 336
Bsp1720I GCTNAGC 1 cut(s) 786
BspACI CCGC 5 cut(s) 432, 612, 651, 681, 801
BspANI GGCC 1 cut(s) 823
BspCNI CTCAG 1 cut(s) 799
BspLI GGNNCC 3 cut(s) 82, 482, 822
BspMAI CTGCAG 1 cut(s) 780
BspMI ACCTGC 2 cut(s) 57, 783
BspPI GGATC 2 cut(s) 53, 119
BsrBI CCGCTC 1 cut(s) 801
BsrDI GCAATG 2 cut(s) 146, 265
BssECI CCNNGG 1 cut(s) 361
BssMI GATC 3 cut(s) 58, 124, 336
BssT1I CCWWGG 1 cut(s) 361
Bst2UI CCWGG 1 cut(s) 129
Bst4CI ACNGT 3 cut(s) 355, 700, 734
BstC8I GCNNGC 2 cut(s) 85, 545
BstDEI CTNAG 3 cut(s) 15, 376, 786
BstENI CCTNNNNNAGG 1 cut(s) 314
BstF5I GGATG 2 cut(s) 428, 637
BstH2I RGCGCY 1 cut(s) 234
BstHHI GCGC 1 cut(s) 233
BstKTI GATC 3 cut(s) 61, 127, 339
BstMBI GATC 3 cut(s) 58, 124, 336
BstMCI CGRYCG 1 cut(s) 598
BstMWI GCNNNNNNNGC 4 cut(s) 89, 190, 193, 255
BstNI CCWGG 1 cut(s) 129
BstSCI CCNGG 2 cut(s) 127, 550
BstSFI CTRYAG 1 cut(s) 776
BstV1I GCAGC 3 cut(s) 171, 205, 511
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BsuRI GGCC 1 cut(s) 823
BtsCI GGATG 2 cut(s) 428, 637
BtsIMutI CAGTG 2 cut(s) 351, 739
BveI ACCTGC 2 cut(s) 57, 783
Cac8I GCNNGC 2 cut(s) 85, 545
CfoI GCGC 1 cut(s) 233
Cfr13I GGNCC 2 cut(s) 410, 821
CseI GACGC 1 cut(s) 593
Csp6I GTAC 2 cut(s) 238, 602
CviAII CATG 2 cut(s) 250, 464
CviQI GTAC 2 cut(s) 238, 602
DdeI CTNAG 3 cut(s) 15, 376, 786
DpnI GATC 3 cut(s) 60, 126, 338
DpnII GATC 3 cut(s) 58, 124, 336
Eco130I CCWWGG 1 cut(s) 361
Eco24I GRGCYC 1 cut(s) 483
Eco47I GGWCC 1 cut(s) 410
Eco47III AGCGCT 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 78
EcoNI CCTNNNNNAGG 1 cut(s) 314
EcoO109I RGGNCCY 1 cut(s) 821
EcoRII CCWGG 1 cut(s) 127
EcoT14I CCWWGG 1 cut(s) 361
EcoT38I GRGCYC 1 cut(s) 483
ErhI CCWWGG 1 cut(s) 361
FaeI CATG 2 cut(s) 253, 467
FaqI GGGAC 2 cut(s) 292, 649
FatI CATG 2 cut(s) 249, 463
FauI CCCGC 1 cut(s) 619
FauNDI CATATG 1 cut(s) 706
Fnu4HI GCNGC 3 cut(s) 185, 194, 500
FokI GGATG 2 cut(s) 415, 644
FriOI GRGCYC 1 cut(s) 483
Fsp4HI GCNGC 3 cut(s) 185, 194, 500
FspBI CTAG 5 cut(s) 113, 491, 515, 519, 536
GlaI GCGC 1 cut(s) 232
GluI GCNGC 3 cut(s) 185, 194, 500
GsaI CCCAGC 2 cut(s) 200, 227
GsuI CTGGAG 4 cut(s) 120, 126, 296, 467
HaeII RGCGCY 1 cut(s) 234
HaeIII GGCC 1 cut(s) 823
HapII CCGG 1 cut(s) 551
HgaI GACGC 1 cut(s) 593
HhaI GCGC 1 cut(s) 233
Hin1II CATG 2 cut(s) 253, 467
Hin6I GCGC 1 cut(s) 231
HinP1I GCGC 1 cut(s) 231
HinfI GANTC 4 cut(s) 305, 449, 487, 555
HpaII CCGG 1 cut(s) 551
HphI GGTGA 2 cut(s) 212, 446
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 2 cut(s) 676, 763
Hpy188III TCNNGA 1 cut(s) 484
Hpy8I GTNNAC 1 cut(s) 238
HpyAV CCTTC 4 cut(s) 152, 283, 378, 470
HpyCH4III ACNGT 3 cut(s) 355, 700, 734
HpyCH4V TGCA 6 cut(s) 23, 52, 151, 187, 717, 778
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 190, 193, 255
HpyF3I CTNAG 3 cut(s) 15, 376, 786
Hsp92II CATG 2 cut(s) 253, 467
HspAI GCGC 1 cut(s) 231
Kzo9I GATC 3 cut(s) 58, 124, 336
LmnI GCTCC 6 cut(s) 80, 101, 228, 363, 486, 798
Lsp1109I GCAGC 3 cut(s) 171, 205, 511
LweI GCATC 1 cut(s) 631
MaeI CTAG 5 cut(s) 113, 491, 515, 519, 536
MaeIII GTNAC 3 cut(s) 172, 719, 814
MalI GATC 3 cut(s) 60, 126, 338
MbiI CCGCTC 1 cut(s) 801
MboI GATC 3 cut(s) 58, 124, 336
MboII GAAGA 1 cut(s) 218
MflI RGATCY 1 cut(s) 58
MhlI GDGCHC 2 cut(s) 360, 483
MluCI AATT 2 cut(s) 67, 330
MlyI GAGTC 2 cut(s) 314, 496
MnlI CCTC 7 cut(s) 248, 320, 423, 489, 536, 650, 662
MseI TTAA 5 cut(s) 155, 165, 606, 627, 690
MspA1I CMGCKG 3 cut(s) 98, 196, 790
MspI CCGG 1 cut(s) 551
MspR9I CCNGG 2 cut(s) 129, 552
MvaI CCWGG 1 cut(s) 129
MwoI GCNNNNNNNGC 4 cut(s) 89, 190, 193, 255
NciI CCSGG 1 cut(s) 552
NdeI CATATG 1 cut(s) 706
NdeII GATC 3 cut(s) 58, 124, 336
NlaIII CATG 2 cut(s) 253, 467
NlaIV GGNNCC 3 cut(s) 82, 482, 822
NmuCI GTSAC 2 cut(s) 172, 814
PcsI WCGNNNNNNNCGW 1 cut(s) 591
PfeI GAWTC 2 cut(s) 449, 555
PfoI TCCNGGA 1 cut(s) 127
PkrI GCNGC 3 cut(s) 186, 195, 501
PleI GAGTC 2 cut(s) 313, 495
PpsI GAGTC 2 cut(s) 313, 495
Psp6I CCWGG 1 cut(s) 127
PspFI CCCAGC 2 cut(s) 196, 223
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 3 cut(s) 82, 482, 822
PspPI GGNCC 2 cut(s) 410, 821
PstI CTGCAG 1 cut(s) 780
PsuI RGATCY 1 cut(s) 58
PvuII CAGCTG 3 cut(s) 98, 196, 790
RsaI GTAC 2 cut(s) 239, 603
RsaNI GTAC 2 cut(s) 238, 602
SaqAI TTAA 5 cut(s) 155, 165, 606, 627, 690
SatI GCNGC 3 cut(s) 185, 194, 500
Sau3AI GATC 3 cut(s) 58, 124, 336
Sau96I GGNCC 2 cut(s) 410, 821
ScaI AGTACT 1 cut(s) 603
SchI GAGTC 2 cut(s) 314, 496
ScrFI CCNGG 2 cut(s) 129, 552
SduI GDGCHC 2 cut(s) 360, 483
SfaNI GCATC 1 cut(s) 631
SfcI CTRYAG 1 cut(s) 776
SinI GGWCC 1 cut(s) 410
Sse9I AATT 2 cut(s) 67, 330
SsiI CCGC 5 cut(s) 432, 612, 651, 681, 801
SspI AATATT 2 cut(s) 563, 570
SspMI CTAG 5 cut(s) 113, 491, 515, 519, 536
StyD4I CCNGG 2 cut(s) 127, 550
StyI CCWWGG 1 cut(s) 361
TaaI ACNGT 3 cut(s) 355, 700, 734
TaqII GACCGA 1 cut(s) 612
TasI AATT 2 cut(s) 67, 330
TatI WGTACW 2 cut(s) 237, 601
TfiI GAWTC 2 cut(s) 449, 555
Tru1I TTAA 5 cut(s) 155, 165, 606, 627, 690
Tru9I TTAA 5 cut(s) 155, 165, 606, 627, 690
TscAI CASTG 2 cut(s) 358, 739
TseFI GTSAC 2 cut(s) 172, 814
TseI GCWGC 3 cut(s) 184, 193, 499
Tsp45I GTSAC 2 cut(s) 172, 814
TspDTI ATGAA 2 cut(s) 219, 452
TspGWI ACGGA 1 cut(s) 191
TspRI CASTG 2 cut(s) 358, 739
VpaK11BI GGWCC 1 cut(s) 410
XagI CCTNNNNNAGG 1 cut(s) 314
XapI RAATTY 1 cut(s) 67
XcmI CCANNNNNNNNNTGG 1 cut(s) 220
XspI CTAG 5 cut(s) 113, 491, 515, 519, 536
ZrmI AGTACT 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.