Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002506.1

Orthogroup ID

OG0000443

Physical Location & Seq

Genomic Coordinates Reverse (-)

53329 .. 54995

Gene Structure 1667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002506.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

atgcttccaccatatctgcaactcggtccacatgattttaccgatggatccaactttgcttcagcaggagccggagttcttgaaacacctgacccaggattggcaataagtcttccgacacagttaagctatttaaaaaatgtggcaaagttgctggagctgaagttaggtgatttagaaaccaaacgtgtgctgaggaccgctgttttcttgatcagcatcggaggggtcgattattttgacttctactctacatatccaaatgccaccgagtccctccgatccgaattcatagcaaatgtgattggtaacttgaccgttgtgctcaaagaaatatacaacttaggaggaaggaagattgcatttcagaatgtaggatctattgggtgcctaccttattttagagaattatacggtgctactgacgggtgtgttgaaggactttcgactttggcgaggctacataatggagctctagctaatgctctcaaagagctagagctagagctatcgggattcaaatattcaatatttaactactatgatgtgactttggacctataccataaccctgcaaaacatgggttcacaaatgggtcggattcatgttgtggtataggaccataccgagcagttgattgcggcggagataatggaaccaaaccatatgaattgtgcccaaacccaggtgactatgtgtggtgggatggtggccattcgactgaaagagcaaactttaaattagcagagctaatatggagtggcacgctaaatactactgggccttacaatgtcaaacagttttttcagcaagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009409 GO:0009505 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009625 GO:0009628 GO:0009941 GO:0009987 GO:0016020 GO:0016143 GO:0016145 GO:0019748 GO:0019757 GO:0019759 GO:0019760 GO:0019762 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031967 GO:0031975 GO:0032991 GO:0042579 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0044237 GO:0044248 GO:0044273 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0071944 GO:0098542 GO:0098588 GO:0098805 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

272

Amino Acids

29.75

Weight (kDa)

5.12

Isoelectric Point (pI)

19.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000443)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica	MD09G1175400.v1.1
pyrus_communis	pycom09g09260
rosa_chinensis	RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata	RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora	Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa	Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha	Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana	Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	387
AciI	CCGC	3 cut(s)	201, 642, 645
AclWI	GGATC	4 cut(s)	42, 55, 276, 385
AcoI	YGGCCR	1 cut(s)	712
AcsI	RAATTY	1 cut(s)	287
AcuI	CTGAAG	2 cut(s)	45, 182
AfiI	CCNNNNNNNGG	3 cut(s)	95, 100, 686
AflIII	ACRYGT	1 cut(s)	187
AgsI	TTSAA	4 cut(s)	83, 437, 520, 528
AjnI	CCWGG	2 cut(s)	94, 685
AloI	GAACNNNNNNTCC	2 cut(s)	60, 92
AluBI	AGCT	8 cut(s)	129, 160, 473, 479, 496, 502, 508, 751
AluI	AGCT	8 cut(s)	129, 160, 473, 479, 496, 502, 508, 751
Alw21I	GWGCWC	2 cut(s)	327, 475
AlwI	GGATC	4 cut(s)	42, 55, 276, 385
AoxI	GGCC	2 cut(s)	712, 782
ApoI	RAATTY	1 cut(s)	287
AspS9I	GGNCC	5 cut(s)	26, 198, 556, 620, 782
AsuHPI	GGTGA	2 cut(s)	182, 701
AvaII	GGWCC	4 cut(s)	26, 198, 556, 620
BaeGI	GKGCMC	1 cut(s)	680
BalI	TGGCCA	1 cut(s)	714
BamHI	GGATCC	1 cut(s)	47
BanI	GGYRCC	1 cut(s)	387
BanII	GRGCYC	1 cut(s)	475
BbsI	GAAGAC	1 cut(s)	104
Bbv12I	GWGCWC	2 cut(s)	327, 475
BbvCI	CCTCAGC	1 cut(s)	194
BccI	CCATC	2 cut(s)	38, 701
BciT130I	CCWGG	2 cut(s)	96, 687
BclI	TGATCA	1 cut(s)	213
BfaI	CTAG	3 cut(s)	476, 497, 503
BisI	GCNGC	1 cut(s)	643
BlsI	GCNGC	1 cut(s)	644
Bme1390I	CCNGG	2 cut(s)	96, 687
Bme18I	GGWCC	4 cut(s)	26, 198, 556, 620
BmgT120I	GGNCC	5 cut(s)	26, 198, 556, 620, 782
BmiI	GGNNCC	4 cut(s)	49, 70, 389, 658
BmrFI	CCNGG	2 cut(s)	96, 687
BmrI	ACTGGG	1 cut(s)	789
BmsI	GCATC	1 cut(s)	228
BmuI	ACTGGG	1 cut(s)	789
BpiI	GAAGAC	1 cut(s)	104
BpmI	CTGGAG	1 cut(s)	176
Bpu10I	CCTNAGC	1 cut(s)	194
BsaBI	GATNNNNATC	1 cut(s)	218
BsaJI	CCNNGG	2 cut(s)	94, 685
BsaXI	ACNNNNNCTCC	4 cut(s)	60, 90, 149, 179
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 100, 686
Bse1I	ACTGG	1 cut(s)	784
Bse8I	GATNNNNATC	1 cut(s)	218
BseBI	CCWGG	2 cut(s)	96, 687
BseDI	CCNNGG	2 cut(s)	94, 685
BseGI	GGATG	1 cut(s)	712
BseJI	GATNNNNATC	1 cut(s)	218
BseLI	CCNNNNNNNGG	3 cut(s)	95, 100, 686
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	1 cut(s)	784
BseSI	GKGCMC	1 cut(s)	680
BshFI	GGCC	2 cut(s)	714, 784
BshNI	GGYRCC	1 cut(s)	387
BsiHKAI	GWGCWC	2 cut(s)	327, 475
BsiSI	CCGG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	259
BslI	CCNNNNNNNGG	3 cut(s)	95, 100, 686
BsmFI	GGGAC	1 cut(s)	259
BsnI	GGCC	2 cut(s)	714, 784
Bsp1286I	GDGCHC	3 cut(s)	327, 475, 680
Bsp143I	GATC	4 cut(s)	47, 213, 281, 377
BspACI	CCGC	3 cut(s)	201, 642, 645
BspANI	GGCC	2 cut(s)	714, 784
BspCNI	CTCAG	1 cut(s)	186
BspLI	GGNNCC	4 cut(s)	49, 70, 389, 658
BspPI	GGATC	4 cut(s)	42, 55, 276, 385
BspT107I	GGYRCC	1 cut(s)	387
BsrI	ACTGG	1 cut(s)	784
BssECI	CCNNGG	2 cut(s)	94, 685
BssMI	GATC	4 cut(s)	47, 213, 281, 377
Bst2UI	CCWGG	2 cut(s)	96, 687
Bst4CI	ACNGT	4 cut(s)	123, 319, 416, 801
BstC8I	GCNNGC	1 cut(s)	767
BstDEI	CTNAG	2 cut(s)	194, 343
BstENI	CCTNNNNNAGG	1 cut(s)	93
BstF5I	GGATG	1 cut(s)	712
BstKTI	GATC	4 cut(s)	50, 216, 284, 380
BstMBI	GATC	4 cut(s)	47, 213, 281, 377
BstNI	CCWGG	2 cut(s)	96, 687
BstSCI	CCNGG	2 cut(s)	94, 685
BstSLI	GKGCMC	1 cut(s)	680
BstV2I	GAAGAC	1 cut(s)	104
BstX2I	RGATCY	2 cut(s)	47, 377
BstYI	RGATCY	2 cut(s)	47, 377
BsuRI	GGCC	2 cut(s)	714, 784
BtsCI	GGATG	1 cut(s)	712
Cac8I	GCNNGC	1 cut(s)	767
Cfr13I	GGNCC	5 cut(s)	26, 198, 556, 620, 782
CviAII	CATG	3 cut(s)	32, 581, 606
DdeI	CTNAG	2 cut(s)	194, 343
DpnI	GATC	4 cut(s)	49, 215, 283, 379
DpnII	GATC	4 cut(s)	47, 213, 281, 377
DraI	TTTAAA	2 cut(s)	135, 739
EaeI	YGGCCR	1 cut(s)	712
EciI	GGCGGA	1 cut(s)	660
Ecl136II	GAGCTC	1 cut(s)	473
Eco24I	GRGCYC	1 cut(s)	475
Eco47I	GGWCC	4 cut(s)	26, 198, 556, 620
Eco53kI	GAGCTC	1 cut(s)	473
Eco57I	CTGAAG	2 cut(s)	45, 182
EcoICRI	GAGCTC	1 cut(s)	473
EcoNI	CCTNNNNNAGG	1 cut(s)	93
EcoRI	GAATTC	1 cut(s)	287
EcoRII	CCWGG	2 cut(s)	94, 685
EcoT38I	GRGCYC	1 cut(s)	475
FaeI	CATG	3 cut(s)	35, 584, 609
FaqI	GGGAC	1 cut(s)	259
FatI	CATG	3 cut(s)	31, 580, 605
FauNDI	CATATG	1 cut(s)	667
FbaI	TGATCA	1 cut(s)	213
Fnu4HI	GCNGC	1 cut(s)	643
FokI	GGATG	1 cut(s)	719
FriOI	GRGCYC	1 cut(s)	475
Fsp4HI	GCNGC	1 cut(s)	643
FspBI	CTAG	3 cut(s)	476, 497, 503
GluI	GCNGC	1 cut(s)	643
GsuI	CTGGAG	1 cut(s)	176
HaeIII	GGCC	2 cut(s)	714, 784
HapII	CCGG	1 cut(s)	72
Hin1II	CATG	3 cut(s)	35, 584, 609
HinfI	GANTC	3 cut(s)	272, 516, 602
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	2 cut(s)	182, 701
Hpy166II	GTNNAC	2 cut(s)	29, 588
Hpy188I	TCNGA	6 cut(s)	117, 224, 281, 286, 369, 601
Hpy188III	TCNNGA	3 cut(s)	80, 211, 513
Hpy8I	GTNNAC	2 cut(s)	29, 588
HpyAV	CCTTC	2 cut(s)	345, 431
HpyCH4III	ACNGT	4 cut(s)	123, 319, 416, 801
HpyCH4IV	ACGT	1 cut(s)	187
HpyCH4V	TGCA	3 cut(s)	19, 362, 575
HpyF3I	CTNAG	2 cut(s)	194, 343
HpySE526I	ACGT	1 cut(s)	187
Hsp92II	CATG	3 cut(s)	35, 584, 609
Ksp22I	TGATCA	1 cut(s)	213
Kzo9I	GATC	4 cut(s)	47, 213, 281, 377
LmnI	GCTCC	3 cut(s)	68, 157, 470
LweI	GCATC	1 cut(s)	228
MaeI	CTAG	3 cut(s)	476, 497, 503
MaeII	ACGT	1 cut(s)	187
MaeIII	GTNAC	3 cut(s)	308, 547, 689
MalI	GATC	4 cut(s)	49, 215, 283, 379
MboI	GATC	4 cut(s)	47, 213, 281, 377
MboII	GAAGA	2 cut(s)	104, 367
MflI	RGATCY	2 cut(s)	47, 377
MhlI	GDGCHC	3 cut(s)	327, 475, 680
MlsI	TGGCCA	1 cut(s)	714
MluCI	AATT	4 cut(s)	287, 407, 671, 740
MluNI	TGGCCA	1 cut(s)	714
MlyI	GAGTC	1 cut(s)	281
MmeI	TCCRAC	3 cut(s)	75, 140, 579
MnlI	CCTC	5 cut(s)	189, 218, 287, 341, 450
Mox20I	TGGCCA	1 cut(s)	714
MscI	TGGCCA	1 cut(s)	714
MseI	TTAA	4 cut(s)	125, 134, 534, 738
Msp20I	TGGCCA	1 cut(s)	714
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	2 cut(s)	96, 687
MvaI	CCWGG	2 cut(s)	96, 687
NdeI	CATATG	1 cut(s)	667
NdeII	GATC	4 cut(s)	47, 213, 281, 377
NlaIII	CATG	3 cut(s)	35, 584, 609
NlaIV	GGNNCC	4 cut(s)	49, 70, 389, 658
NmuCI	GTSAC	2 cut(s)	547, 689
PcsI	WCGNNNNNNNCGW	2 cut(s)	228, 452
PfeI	GAWTC	2 cut(s)	516, 602
PkrI	GCNGC	1 cut(s)	644
PleI	GAGTC	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	280
Psp124BI	GAGCTC	1 cut(s)	475
Psp6I	CCWGG	2 cut(s)	94, 685
PspGI	CCWGG	2 cut(s)	94, 685
PspN4I	GGNNCC	4 cut(s)	49, 70, 389, 658
PspPI	GGNCC	5 cut(s)	26, 198, 556, 620, 782
PsuI	RGATCY	2 cut(s)	47, 377
SacI	GAGCTC	1 cut(s)	475
SaqAI	TTAA	4 cut(s)	125, 134, 534, 738
SatI	GCNGC	1 cut(s)	643
Sau3AI	GATC	4 cut(s)	47, 213, 281, 377
Sau96I	GGNCC	5 cut(s)	26, 198, 556, 620, 782
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	2 cut(s)	96, 687
SduI	GDGCHC	3 cut(s)	327, 475, 680
SfaNI	GCATC	1 cut(s)	228
SinI	GGWCC	4 cut(s)	26, 198, 556, 620
Sse9I	AATT	4 cut(s)	287, 407, 671, 740
SsiI	CCGC	3 cut(s)	201, 642, 645
SspI	AATATT	2 cut(s)	524, 531
SspMI	CTAG	3 cut(s)	476, 497, 503
SstI	GAGCTC	1 cut(s)	475
StyD4I	CCNGG	2 cut(s)	94, 685
TaaI	ACNGT	4 cut(s)	123, 319, 416, 801
TaiI	ACGT	1 cut(s)	190
TaqI	TCGA	3 cut(s)	231, 446, 719
TaqII	GACCGA	1 cut(s)	14
TasI	AATT	4 cut(s)	287, 407, 671, 740
TauI	GCSGC	1 cut(s)	645
TfiI	GAWTC	2 cut(s)	516, 602
Tru1I	TTAA	4 cut(s)	125, 134, 534, 738
Tru9I	TTAA	4 cut(s)	125, 134, 534, 738
TseFI	GTSAC	2 cut(s)	547, 689
Tsp45I	GTSAC	2 cut(s)	547, 689
TspDTI	ATGAA	3 cut(s)	280, 594, 684
VpaK11BI	GGWCC	4 cut(s)	26, 198, 556, 620
XagI	CCTNNNNNAGG	1 cut(s)	93
XapI	RAATTY	1 cut(s)	287
XspI	CTAG	3 cut(s)	476, 497, 503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.