Rh4AG390700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000443
Physical Location & Seq
Reverse (-)
69701970 .. 69709696
7727 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG390700.1

Sequence Viewer

Length: 291 bp
ATGGATGAAGGTCTGCCGTCTGCACTCAGTAACTCACACCTTTCTCCTTCCCGGCTTCCCGTAAACGAGATTCCCAGATCTGAGATCTCCTCTCGCAGTCAGTCGGCCCAGATCGAGAGCCTTGCCGTCCGCCGTCGCCGATTGTGTTTGCTACGGACACCGTGCTTCCTCCTCGACCAAATCGGCTCCGTGAACCCCCAATTTCAACCTCGATTCAGCTTCACTTCTCTGACCTCCGAATTCTGTCGCTTCATTTGCTTGATCGCACTTCGGATTCAGCTCCGGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.93

Weight (kDa)

10.25

Isoelectric Point (pI)

91.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000443)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica MD09G1175400.v1.1
pyrus_communis pycom09g09260
rosa_chinensis RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 130
AcsI RAATTY 1 cut(s) 239
AgsI TTSAA 1 cut(s) 206
AluBI AGCT 2 cut(s) 219, 280
AluI AGCT 2 cut(s) 219, 280
AoxI GGCC 1 cut(s) 105
ApoI RAATTY 1 cut(s) 239
AspS9I GGNCC 1 cut(s) 106
AsuC2I CCSGG 1 cut(s) 52
BceAI ACGGC 2 cut(s) 110, 117
BcgI CGANNNNNNTGC 2 cut(s) 104, 138
BcnI CCSGG 1 cut(s) 52
BglII AGATCT 2 cut(s) 77, 84
Bme1390I CCNGG 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 1 cut(s) 52
BplI GAGNNNNNCTC 2 cut(s) 74, 106
BpuMI CCSGG 1 cut(s) 52
BseGI GGATG 1 cut(s) 10
BseMII CTCAG 2 cut(s) 40, 72
BseRI GAGGAG 2 cut(s) 79, 161
BsgI GTGCAG 1 cut(s) 6
BshFI GGCC 1 cut(s) 107
BsiSI CCGG 2 cut(s) 52, 283
BsnI GGCC 1 cut(s) 107
Bsp143I GATC 4 cut(s) 77, 84, 111, 261
BspACI CCGC 1 cut(s) 130
BspANI GGCC 1 cut(s) 107
BspCNI CTCAG 2 cut(s) 39, 73
BspLI GGNNCC 1 cut(s) 187
BssMI GATC 4 cut(s) 77, 84, 111, 261
Bst4CI ACNGT 1 cut(s) 162
BstDEI CTNAG 2 cut(s) 26, 81
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 4 cut(s) 80, 87, 114, 264
BstMBI GATC 4 cut(s) 77, 84, 111, 261
BstMWI GCNNNNNNNGC 1 cut(s) 255
BstSCI CCNGG 1 cut(s) 50
BstX2I RGATCY 2 cut(s) 77, 84
BstYI RGATCY 2 cut(s) 77, 84
BsuRI GGCC 1 cut(s) 107
BtsCI GGATG 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 106
CviJI RGCY 6 cut(s) 55, 107, 120, 186, 219, 280
CviKI_1 RGCY 6 cut(s) 55, 107, 120, 186, 219, 280
DdeI CTNAG 2 cut(s) 26, 81
DpnI GATC 4 cut(s) 79, 86, 113, 263
DpnII GATC 4 cut(s) 77, 84, 111, 261
EciI GGCGGA 1 cut(s) 119
EcoRI GAATTC 1 cut(s) 239
FokI GGATG 1 cut(s) 17
HaeIII GGCC 1 cut(s) 107
HapII CCGG 2 cut(s) 52, 283
HinfI GANTC 3 cut(s) 70, 213, 274
HpaII CCGG 2 cut(s) 52, 283
Hpy166II GTNNAC 2 cut(s) 64, 193
Hpy188I TCNGA 4 cut(s) 82, 231, 238, 273
Hpy188III TCNNGA 1 cut(s) 115
Hpy8I GTNNAC 2 cut(s) 64, 193
Hpy99I CGWCG 1 cut(s) 138
HpyAV CCTTC 1 cut(s) 57
HpyCH4III ACNGT 1 cut(s) 162
HpyCH4V TGCA 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 1 cut(s) 255
HpyF3I CTNAG 2 cut(s) 26, 81
Kzo9I GATC 4 cut(s) 77, 84, 111, 261
LmnI GCTCC 2 cut(s) 191, 285
LpnPI CCDG 3 cut(s) 65, 88, 122
MaeIII GTNAC 1 cut(s) 29
MalI GATC 4 cut(s) 79, 86, 113, 263
MboI GATC 4 cut(s) 77, 84, 111, 261
MflI RGATCY 2 cut(s) 77, 84
MluCI AATT 2 cut(s) 200, 239
MnlI CCTC 5 cut(s) 100, 179, 182, 219, 244
MspI CCGG 2 cut(s) 52, 283
MspR9I CCNGG 1 cut(s) 52
MwoI GCNNNNNNNGC 1 cut(s) 255
NciI CCSGG 1 cut(s) 52
NdeII GATC 4 cut(s) 77, 84, 111, 261
NlaIV GGNNCC 1 cut(s) 187
PfeI GAWTC 3 cut(s) 70, 213, 274
PspN4I GGNNCC 1 cut(s) 187
PspPI GGNCC 1 cut(s) 106
PsuI RGATCY 2 cut(s) 77, 84
Sau3AI GATC 4 cut(s) 77, 84, 111, 261
Sau96I GGNCC 1 cut(s) 106
ScrFI CCNGG 1 cut(s) 52
SetI ASST 6 cut(s) 13, 42, 211, 221, 236, 282
Sse9I AATT 2 cut(s) 200, 239
SsiI CCGC 1 cut(s) 130
StyD4I CCNGG 1 cut(s) 50
TaaI ACNGT 1 cut(s) 162
TaqI TCGA 3 cut(s) 114, 174, 211
TasI AATT 2 cut(s) 200, 239
TfiI GAWTC 3 cut(s) 70, 213, 274
TspDTI ATGAA 2 cut(s) 21, 241
TspGWI ACGGA 2 cut(s) 169, 178
XapI RAATTY 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.