Rh2BG453700

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Reverse (-)
64160137 .. 64222447
62311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG453700.1

Sequence Viewer

Length: 1140 bp
ATGGCAAGTCTTAGCTACATTGTTTACGTGTTGGCTAGCCTATTCAACCTAATTAGCTTCCTTCTTTACGGTCATCATGATCATCCTGATCAGTACTCCAGTAGTACTTGTATAGAACACAATCATAATAAGGTGGCGTTGTTTGTGTTTGGGGACTCACCATTTGAGGCTGGAAACAACCAATACCTTCCTAATATAACCGTAGAAGAAGACATAGCGATAGCCTGGCCATATGGAGAAACATACTTCCACCATCCCACTGGAAGATACAGCGATGGGCGTATTGTCCCAGATTTTATTGCTAAGTTTGCAAAACTGCCAATGCTTCCACCATATCTGCAACCCGGTCCACATGATTTTACCGATGGATCCAACTTTGCTTCAGCAGGAGCCGGAGTTCTTGAAACACCTGACCCAGGATTGGCAGTAAGTCTTCCGACACAGTTAAGCTATTTAAAAAATGTGGCAAAGTTGCTGGAGCTGAAGTTAGGTGATTTAGAAACCAAACGTGTGCTGAGGACCGCTGTTTTCTTGATCAGCATCGGAGGGGTCGATTATTTTGACTTCTACTCTACATATCCAAATGCCACCGAGTCCCTCCGATCCGAATTCATAGCAAATGTGATTGGTAACTTGACCGTTGTGCTCAAAGAAATATACAACTTAGGAGGAAGGAAGATTGGATTTCAGAATGTAGGATCTATTGGGTGCCTACCTTATTTTAGAGAATTATACGGTGCTACTGAAGGGTGTGTTGAAGGACTTTCGACTTTGGCGAGGCTACATAATGGAGCTCTAGCTAATGCTCTCAAAGAGCTAGAGCTAGAGCTATCGGGATTCAAATATTCAATATTTAACTACTATGACGTGACTTTGGACCTATACCATAACCCTGCAAAACATGGGTTCACAAATGGGTCGGATGCATGTTGTGGTATAGGACCATACCGAGGAGATGATTGCGGCGGAGATAATGGAACCGAACCTTATGAATTGTGCCCAAACCCAGGTGACTATGTGTGGTGGGATGGTGGCCATTCGACTGAAAGAGCAAACCTTAAATTGGCAGAGCTAATATGGAGTGGCACGCTAAATACTACTGGGCCTTACAATGTCAAACAGTTTTTTCAGCAAGTTTGA

Protein Analysis

379

Amino Acids

41.81

Weight (kDa)

5.04

Isoelectric Point (pI)

25.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 47 - 359 1.1e-24 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000443)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica MD09G1175400.v1.1
pyrus_communis pycom09g09260
rosa_chinensis RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 708
AciI CCGC 3 cut(s) 522, 963, 966
AclWI GGATC 4 cut(s) 363, 376, 597, 706
AcoI YGGCCR 2 cut(s) 227, 1033
AcsI RAATTY 1 cut(s) 608
AcuI CTGAAG 3 cut(s) 366, 503, 765
AfaI GTAC 2 cut(s) 95, 106
AfiI CCNNNNNNNGG 5 cut(s) 416, 421, 950, 1007, 1063
AflIII ACRYGT 2 cut(s) 27, 508
AgsI TTSAA 5 cut(s) 46, 404, 758, 841, 849
AjiI CACGTC 1 cut(s) 868
AjnI CCWGG 3 cut(s) 224, 415, 1006
AloI GAACNNNNNNTCC 2 cut(s) 381, 413
Alw21I GWGCWC 2 cut(s) 648, 796
AlwI GGATC 4 cut(s) 363, 376, 597, 706
AoxI GGCC 3 cut(s) 227, 1033, 1103
ApoI RAATTY 1 cut(s) 608
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
AspS9I GGNCC 5 cut(s) 347, 519, 877, 941, 1103
AsuC2I CCSGG 1 cut(s) 345
AsuHPI GGTGA 3 cut(s) 150, 503, 1022
AsuNHI GCTAGC 1 cut(s) 35
AvaII GGWCC 4 cut(s) 347, 519, 877, 941
BaeGI GKGCMC 1 cut(s) 1001
BalI TGGCCA 2 cut(s) 229, 1035
BamHI GGATCC 1 cut(s) 368
BanI GGYRCC 1 cut(s) 708
BanII GRGCYC 1 cut(s) 796
BbsI GAAGAC 2 cut(s) 216, 425
Bbv12I GWGCWC 2 cut(s) 648, 796
BbvCI CCTCAGC 1 cut(s) 515
BccI CCATC 4 cut(s) 261, 269, 359, 1022
BciT130I CCWGG 3 cut(s) 226, 417, 1008
BclI TGATCA 3 cut(s) 79, 88, 534
BcnI CCSGG 1 cut(s) 345
BfaI CTAG 4 cut(s) 36, 797, 818, 824
BisI GCNGC 1 cut(s) 964
BlsI GCNGC 1 cut(s) 965
BmcAI AGTACT 2 cut(s) 95, 106
Bme1390I CCNGG 4 cut(s) 226, 345, 417, 1008
Bme18I GGWCC 4 cut(s) 347, 519, 877, 941
BmgBI CACGTC 1 cut(s) 868
BmgT120I GGNCC 5 cut(s) 347, 519, 877, 941, 1103
BmiI GGNNCC 4 cut(s) 370, 391, 710, 979
BmrFI CCNGG 4 cut(s) 226, 345, 417, 1008
BmrI ACTGGG 1 cut(s) 1110
BmsI GCATC 2 cut(s) 549, 913
BmtI GCTAGC 1 cut(s) 39
BmuI ACTGGG 1 cut(s) 1110
BpiI GAAGAC 2 cut(s) 216, 425
BpmI CTGGAG 2 cut(s) 82, 497
Bpu10I CCTNAGC 1 cut(s) 515
BpuMI CCSGG 1 cut(s) 345
BsaAI YACGTR 1 cut(s) 28
BsaBI GATNNNNATC 1 cut(s) 539
BsaJI CCNNGG 3 cut(s) 415, 949, 1006
BsaXI ACNNNNNCTCC 4 cut(s) 381, 411, 470, 500
Bsc4I CCNNNNNNNGG 5 cut(s) 416, 421, 950, 1007, 1063
Bse1I ACTGG 3 cut(s) 99, 265, 1105
Bse8I GATNNNNATC 1 cut(s) 539
BseBI CCWGG 3 cut(s) 226, 417, 1008
BseDI CCNNGG 3 cut(s) 415, 949, 1006
BseGI GGATG 4 cut(s) 82, 253, 928, 1033
BseJI GATNNNNATC 1 cut(s) 539
BseLI CCNNNNNNNGG 5 cut(s) 416, 421, 950, 1007, 1063
BseMII CTCAG 1 cut(s) 506
BseNI ACTGG 3 cut(s) 99, 265, 1105
BseRI GAGGAG 1 cut(s) 966
BseSI GKGCMC 1 cut(s) 1001
BshFI GGCC 3 cut(s) 229, 1035, 1105
BshNI GGYRCC 1 cut(s) 708
BsiHKAI GWGCWC 2 cut(s) 648, 796
BsiSI CCGG 2 cut(s) 345, 393
BslFI GGGAC 3 cut(s) 167, 272, 580
BslI CCNNNNNNNGG 5 cut(s) 416, 421, 950, 1007, 1063
BsmFI GGGAC 3 cut(s) 167, 272, 580
BsnI GGCC 3 cut(s) 229, 1035, 1105
Bsp1286I GDGCHC 3 cut(s) 648, 796, 1001
Bsp143I GATC 6 cut(s) 79, 88, 368, 534, 602, 698
BspACI CCGC 3 cut(s) 522, 963, 966
BspANI GGCC 3 cut(s) 229, 1035, 1105
BspCNI CTCAG 1 cut(s) 507
BspHI TCATGA 1 cut(s) 76
BspLI GGNNCC 4 cut(s) 370, 391, 710, 979
BspOI GCTAGC 1 cut(s) 39
BspPI GGATC 4 cut(s) 363, 376, 597, 706
BspT107I GGYRCC 1 cut(s) 708
BsrI ACTGG 3 cut(s) 99, 265, 1105
BssECI CCNNGG 3 cut(s) 415, 949, 1006
BssMI GATC 6 cut(s) 79, 88, 368, 534, 602, 698
Bst2UI CCWGG 3 cut(s) 226, 417, 1008
Bst4CI ACNGT 6 cut(s) 71, 202, 444, 640, 737, 1122
BstBAI YACGTR 1 cut(s) 28
BstC8I GCNNGC 2 cut(s) 37, 1088
BstDEI CTNAG 4 cut(s) 11, 303, 515, 664
BstENI CCTNNNNNAGG 1 cut(s) 414
BstF5I GGATG 4 cut(s) 82, 253, 928, 1033
BstKTI GATC 6 cut(s) 82, 91, 371, 537, 605, 701
BstMBI GATC 6 cut(s) 79, 88, 368, 534, 602, 698
BstMWI GCNNNNNNNGC 1 cut(s) 308
BstNI CCWGG 3 cut(s) 226, 417, 1008
BstNSI RCATGY 1 cut(s) 930
BstSCI CCNGG 4 cut(s) 224, 343, 415, 1006
BstSLI GKGCMC 1 cut(s) 1001
BstV2I GAAGAC 2 cut(s) 216, 425
BstX2I RGATCY 2 cut(s) 368, 698
BstXI CCANNNNNNTGG 1 cut(s) 260
BstYI RGATCY 2 cut(s) 368, 698
BsuRI GGCC 3 cut(s) 229, 1035, 1105
BtgZI GCGATG 1 cut(s) 288
BtrI CACGTC 1 cut(s) 868
BtsCI GGATG 4 cut(s) 82, 253, 928, 1033
BtsIMutI CAGTG 1 cut(s) 258
Cac8I GCNNGC 2 cut(s) 37, 1088
CciI TCATGA 1 cut(s) 76
Cfr13I GGNCC 5 cut(s) 347, 519, 877, 941, 1103
Csp6I GTAC 2 cut(s) 94, 105
CviAII CATG 4 cut(s) 77, 353, 902, 927
CviQI GTAC 2 cut(s) 94, 105
DdeI CTNAG 4 cut(s) 11, 303, 515, 664
DpnI GATC 6 cut(s) 81, 90, 370, 536, 604, 700
DpnII GATC 6 cut(s) 79, 88, 368, 534, 602, 698
DraI TTTAAA 1 cut(s) 456
EaeI YGGCCR 2 cut(s) 227, 1033
EciI GGCGGA 1 cut(s) 981
Ecl136II GAGCTC 1 cut(s) 794
Eco24I GRGCYC 1 cut(s) 796
Eco47I GGWCC 4 cut(s) 347, 519, 877, 941
Eco53kI GAGCTC 1 cut(s) 794
Eco57I CTGAAG 3 cut(s) 366, 503, 765
EcoICRI GAGCTC 1 cut(s) 794
EcoNI CCTNNNNNAGG 1 cut(s) 414
EcoRI GAATTC 1 cut(s) 608
EcoRII CCWGG 3 cut(s) 224, 415, 1006
EcoT22I ATGCAT 1 cut(s) 928
EcoT38I GRGCYC 1 cut(s) 796
FaeI CATG 4 cut(s) 80, 356, 905, 930
FaqI GGGAC 3 cut(s) 167, 272, 580
FatI CATG 4 cut(s) 76, 352, 901, 926
FauNDI CATATG 1 cut(s) 232
FbaI TGATCA 3 cut(s) 79, 88, 534
Fnu4HI GCNGC 1 cut(s) 964
FokI GGATG 4 cut(s) 69, 240, 935, 1040
FriOI GRGCYC 1 cut(s) 796
Fsp4HI GCNGC 1 cut(s) 964
FspBI CTAG 4 cut(s) 36, 797, 818, 824
GluI GCNGC 1 cut(s) 964
GsuI CTGGAG 2 cut(s) 82, 497
HaeIII GGCC 3 cut(s) 229, 1035, 1105
HapII CCGG 2 cut(s) 345, 393
Hin1II CATG 4 cut(s) 80, 356, 905, 930
HinfI GANTC 3 cut(s) 155, 593, 837
HpaII CCGG 2 cut(s) 345, 393
HphI GGTGA 3 cut(s) 150, 503, 1022
Hpy166II GTNNAC 3 cut(s) 25, 350, 909
Hpy188I TCNGA 6 cut(s) 438, 545, 602, 607, 690, 922
Hpy188III TCNNGA 5 cut(s) 77, 86, 401, 532, 834
Hpy8I GTNNAC 3 cut(s) 25, 350, 909
HpyAV CCTTC 5 cut(s) 71, 197, 666, 740, 752
HpyCH4III ACNGT 6 cut(s) 71, 202, 444, 640, 737, 1122
HpyCH4IV ACGT 3 cut(s) 27, 508, 867
HpyCH4V TGCA 4 cut(s) 311, 340, 896, 926
HpyF10VI GCNNNNNNNGC 1 cut(s) 308
HpyF3I CTNAG 4 cut(s) 11, 303, 515, 664
HpySE526I ACGT 3 cut(s) 27, 508, 867
Hsp92II CATG 4 cut(s) 80, 356, 905, 930
Ksp22I TGATCA 3 cut(s) 79, 88, 534
Kzo9I GATC 6 cut(s) 79, 88, 368, 534, 602, 698
LmnI GCTCC 3 cut(s) 389, 478, 791
LweI GCATC 2 cut(s) 549, 913
MaeI CTAG 4 cut(s) 36, 797, 818, 824
MaeII ACGT 3 cut(s) 27, 508, 867
MaeIII GTNAC 3 cut(s) 629, 868, 1010
MalI GATC 6 cut(s) 81, 90, 370, 536, 604, 700
MboI GATC 6 cut(s) 79, 88, 368, 534, 602, 698
MboII GAAGA 5 cut(s) 218, 221, 276, 425, 688
MflI RGATCY 2 cut(s) 368, 698
MhlI GDGCHC 3 cut(s) 648, 796, 1001
MlsI TGGCCA 2 cut(s) 229, 1035
MluCI AATT 5 cut(s) 51, 608, 728, 992, 1061
MluNI TGGCCA 2 cut(s) 229, 1035
MlyI GAGTC 2 cut(s) 149, 602
MmeI TCCRAC 3 cut(s) 396, 461, 900
MnlI CCTC 7 cut(s) 160, 510, 539, 608, 662, 771, 944
Mox20I TGGCCA 2 cut(s) 229, 1035
Mph1103I ATGCAT 1 cut(s) 928
MscI TGGCCA 2 cut(s) 229, 1035
MseI TTAA 4 cut(s) 446, 455, 855, 1059
Msp20I TGGCCA 2 cut(s) 229, 1035
MspA1I CMGCKG 1 cut(s) 524
MspI CCGG 2 cut(s) 345, 393
MspR9I CCNGG 4 cut(s) 226, 345, 417, 1008
MvaI CCWGG 3 cut(s) 226, 417, 1008
MwoI GCNNNNNNNGC 1 cut(s) 308
NciI CCSGG 1 cut(s) 345
NdeI CATATG 1 cut(s) 232
NdeII GATC 6 cut(s) 79, 88, 368, 534, 602, 698
NheI GCTAGC 1 cut(s) 35
NlaIII CATG 4 cut(s) 80, 356, 905, 930
NlaIV GGNNCC 4 cut(s) 370, 391, 710, 979
NmuCI GTSAC 2 cut(s) 868, 1010
NsiI ATGCAT 1 cut(s) 928
NspI RCATGY 1 cut(s) 930
PagI TCATGA 1 cut(s) 76
PcsI WCGNNNNNNNCGW 2 cut(s) 549, 773
PfeI GAWTC 1 cut(s) 837
PkrI GCNGC 1 cut(s) 965
PleI GAGTC 2 cut(s) 149, 601
PpsI GAGTC 2 cut(s) 149, 601
Ppu21I YACGTR 1 cut(s) 28
Psp124BI GAGCTC 1 cut(s) 796
Psp6I CCWGG 3 cut(s) 224, 415, 1006
PspGI CCWGG 3 cut(s) 224, 415, 1006
PspN4I GGNNCC 4 cut(s) 370, 391, 710, 979
PspPI GGNCC 5 cut(s) 347, 519, 877, 941, 1103
PsuI RGATCY 2 cut(s) 368, 698
RsaI GTAC 2 cut(s) 95, 106
RsaNI GTAC 2 cut(s) 94, 105
SacI GAGCTC 1 cut(s) 796
SaqAI TTAA 4 cut(s) 446, 455, 855, 1059
SatI GCNGC 1 cut(s) 964
Sau3AI GATC 6 cut(s) 79, 88, 368, 534, 602, 698
Sau96I GGNCC 5 cut(s) 347, 519, 877, 941, 1103
ScaI AGTACT 2 cut(s) 95, 106
SchI GAGTC 2 cut(s) 149, 602
ScrFI CCNGG 4 cut(s) 226, 345, 417, 1008
SduI GDGCHC 3 cut(s) 648, 796, 1001
SfaNI GCATC 2 cut(s) 549, 913
SinI GGWCC 4 cut(s) 347, 519, 877, 941
Sse9I AATT 5 cut(s) 51, 608, 728, 992, 1061
SsiI CCGC 3 cut(s) 522, 963, 966
SspI AATATT 2 cut(s) 845, 852
SspMI CTAG 4 cut(s) 36, 797, 818, 824
SstI GAGCTC 1 cut(s) 796
StyD4I CCNGG 4 cut(s) 224, 343, 415, 1006
TaaI ACNGT 6 cut(s) 71, 202, 444, 640, 737, 1122
TaiI ACGT 3 cut(s) 30, 511, 870
TaqI TCGA 3 cut(s) 552, 767, 1040
TasI AATT 5 cut(s) 51, 608, 728, 992, 1061
TatI WGTACW 2 cut(s) 93, 104
TauI GCSGC 1 cut(s) 966
TfiI GAWTC 1 cut(s) 837
Tru1I TTAA 4 cut(s) 446, 455, 855, 1059
Tru9I TTAA 4 cut(s) 446, 455, 855, 1059
TscAI CASTG 1 cut(s) 265
TseFI GTSAC 2 cut(s) 868, 1010
Tsp45I GTSAC 2 cut(s) 868, 1010
TspDTI ATGAA 2 cut(s) 601, 1005
TspRI CASTG 1 cut(s) 265
VpaK11BI GGWCC 4 cut(s) 347, 519, 877, 941
XagI CCTNNNNNAGG 1 cut(s) 414
XapI RAATTY 1 cut(s) 608
XceI RCATGY 1 cut(s) 930
XcmI CCANNNNNNNNNTGG 1 cut(s) 257
XspI CTAG 4 cut(s) 36, 797, 818, 824
ZrmI AGTACT 2 cut(s) 95, 106
Zsp2I ATGCAT 1 cut(s) 928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.