RLG00000020245

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
62782243 .. 62782852
610 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020245

Sequence Viewer

Length: 414 bp
ATGAATCCTGCACTTGGTAGTAAATGTTCTGAAGAACCATTAACACTAGCCAGACTCCATAACAGAGCTCTATTCATTGCCTTCAAGAAGTTAGAGAAGAGCTTACCAGGATTCAAATTCTCAATATTCGACTACTACAATGCACTTGGGGACAGAATCAACAACCCTTCAAAATATGGTTTCAAGGATGGAAAGGCTGCTTGTTGTGGCAGTGGAGCATATAGGGGGTCTAATTGTGGTGGTGGAAGGAATGGGACAGCATATGAACTATGCAGCAATCCCAGTCAGTATGTGTGGTTTGATGGAGCTCACACAACTGAAAGTGCCAACCACCAACTAGCTGAACTTATATGGAATGGACCACAAAATATCACAGGGCCTTACACTGTCAAAAAACTATTTGAGCTTGCTTAA

Protein Analysis

138

Amino Acids

15.01

Weight (kDa)

8.81

Isoelectric Point (pI)

24.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000443)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica MD09G1175400.v1.1
pyrus_communis pycom09g09260
rosa_chinensis RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 116
AcuI CTGAAG 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 14
AgsI TTSAA 4 cut(s) 85, 115, 171, 184
AjnI CCWGG 1 cut(s) 106
AluBI AGCT 5 cut(s) 68, 102, 308, 341, 406
AluI AGCT 5 cut(s) 68, 102, 308, 341, 406
Alw21I GWGCWC 2 cut(s) 70, 310
AoxI GGCC 1 cut(s) 377
ApeKI GCWGC 2 cut(s) 197, 273
ApoI RAATTY 1 cut(s) 116
AspS9I GGNCC 2 cut(s) 359, 377
AvaII GGWCC 1 cut(s) 359
BanII GRGCYC 2 cut(s) 70, 310
Bbv12I GWGCWC 2 cut(s) 70, 310
BbvI GCAGC 2 cut(s) 184, 285
BccI CCATC 2 cut(s) 182, 296
BciT130I CCWGG 1 cut(s) 108
BfaI CTAG 2 cut(s) 47, 338
BisI GCNGC 2 cut(s) 198, 274
BlsI GCNGC 2 cut(s) 199, 275
Bme1390I CCNGG 1 cut(s) 108
Bme18I GGWCC 1 cut(s) 359
BmgT120I GGNCC 2 cut(s) 359, 377
BmrFI CCNGG 1 cut(s) 108
BmrI ACTGGG 1 cut(s) 276
BmuI ACTGGG 1 cut(s) 276
Bsc4I CCNNNNNNNGG 1 cut(s) 14
Bse1I ACTGG 1 cut(s) 282
Bse3DI GCAATG 1 cut(s) 75
BseBI CCWGG 1 cut(s) 108
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 1 cut(s) 14
BseMI GCAATG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 282
BseXI GCAGC 2 cut(s) 184, 285
BshFI GGCC 1 cut(s) 379
BsiHKAI GWGCWC 2 cut(s) 70, 310
BslFI GGGAC 2 cut(s) 164, 268
BslI CCNNNNNNNGG 1 cut(s) 14
BsmFI GGGAC 2 cut(s) 164, 268
BsnI GGCC 1 cut(s) 379
Bsp1286I GDGCHC 2 cut(s) 70, 310
BspANI GGCC 1 cut(s) 379
BspQI GCTCTTC 1 cut(s) 92
BsrDI GCAATG 1 cut(s) 75
BsrI ACTGG 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 388
Bst6I CTCTTC 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 408
BstF5I GGATG 1 cut(s) 193
BstNI CCWGG 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 106
BstV1I GCAGC 2 cut(s) 184, 285
BsuRI GGCC 1 cut(s) 379
BtsCI GGATG 1 cut(s) 193
BtsI GCAGTG 1 cut(s) 217
BtsIMutI CAGTG 2 cut(s) 217, 384
Cac8I GCNNGC 1 cut(s) 408
Cfr13I GGNCC 2 cut(s) 359, 377
CviJI RGCY 8 cut(s) 50, 68, 102, 197, 308, 341, 379, 406
CviKI_1 RGCY 8 cut(s) 50, 68, 102, 197, 308, 341, 379, 406
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
Ecl136II GAGCTC 2 cut(s) 68, 308
Eco24I GRGCYC 2 cut(s) 70, 310
Eco47I GGWCC 1 cut(s) 359
Eco53kI GAGCTC 2 cut(s) 68, 308
Eco57I CTGAAG 1 cut(s) 51
EcoICRI GAGCTC 2 cut(s) 68, 308
EcoO109I RGGNCCY 1 cut(s) 377
EcoRII CCWGG 1 cut(s) 106
EcoT38I GRGCYC 2 cut(s) 70, 310
FaqI GGGAC 2 cut(s) 164, 268
FauNDI CATATG 1 cut(s) 262
Fnu4HI GCNGC 2 cut(s) 198, 274
FokI GGATG 1 cut(s) 200
FriOI GRGCYC 2 cut(s) 70, 310
Fsp4HI GCNGC 2 cut(s) 198, 274
FspBI CTAG 2 cut(s) 47, 338
GluI GCNGC 2 cut(s) 198, 274
HaeIII GGCC 1 cut(s) 379
HinfI GANTC 4 cut(s) 4, 54, 111, 156
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 1 cut(s) 85
HpyAV CCTTC 3 cut(s) 91, 177, 240
HpyCH4III ACNGT 1 cut(s) 388
HpyCH4V TGCA 3 cut(s) 11, 143, 273
LguI GCTCTTC 1 cut(s) 92
LmnI GCTCC 2 cut(s) 215, 305
LpnPI CCDG 6 cut(s) 21, 64, 93, 120, 295, 360
Lsp1109I GCAGC 2 cut(s) 184, 285
MaeI CTAG 2 cut(s) 47, 338
MboII GAAGA 2 cut(s) 44, 109
MhlI GDGCHC 2 cut(s) 70, 310
MluCI AATT 2 cut(s) 116, 232
MlyI GAGTC 1 cut(s) 48
MseI TTAA 2 cut(s) 41, 412
MspR9I CCNGG 1 cut(s) 108
MvaI CCWGG 1 cut(s) 108
NdeI CATATG 1 cut(s) 262
PciSI GCTCTTC 1 cut(s) 92
PfeI GAWTC 3 cut(s) 4, 111, 156
PkrI GCNGC 2 cut(s) 199, 275
PleI GAGTC 1 cut(s) 48
PpsI GAGTC 1 cut(s) 48
Psp124BI GAGCTC 2 cut(s) 70, 310
Psp6I CCWGG 1 cut(s) 106
PspGI CCWGG 1 cut(s) 106
PspPI GGNCC 2 cut(s) 359, 377
PsrI GAACNNNNNNTAC 2 cut(s) 10, 42
SacI GAGCTC 2 cut(s) 70, 310
SapI GCTCTTC 1 cut(s) 92
SaqAI TTAA 2 cut(s) 41, 412
SatI GCNGC 2 cut(s) 198, 274
Sau96I GGNCC 2 cut(s) 359, 377
SchI GAGTC 1 cut(s) 48
ScrFI CCNGG 1 cut(s) 108
SduI GDGCHC 2 cut(s) 70, 310
SetI ASST 5 cut(s) 70, 104, 310, 343, 408
SinI GGWCC 1 cut(s) 359
Sse9I AATT 2 cut(s) 116, 232
SspI AATATT 1 cut(s) 126
SspMI CTAG 2 cut(s) 47, 338
SstI GAGCTC 2 cut(s) 70, 310
StyD4I CCNGG 1 cut(s) 106
TaaI ACNGT 1 cut(s) 388
TaqI TCGA 1 cut(s) 129
TasI AATT 2 cut(s) 116, 232
TfiI GAWTC 3 cut(s) 4, 111, 156
Tru1I TTAA 2 cut(s) 41, 412
Tru9I TTAA 2 cut(s) 41, 412
TscAI CASTG 2 cut(s) 217, 391
TseI GCWGC 2 cut(s) 197, 273
TspDTI ATGAA 3 cut(s) 17, 64, 279
TspRI CASTG 2 cut(s) 217, 391
VpaK11BI GGWCC 1 cut(s) 359
XapI RAATTY 1 cut(s) 116
XspI CTAG 2 cut(s) 47, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.