Rw2G037170

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
61209375 .. 61221595
12221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G037170.1

Sequence Viewer

Length: 1053 bp
ATGAAGAAGACACAGAAGACAGAGGAGCCGGCAGATAATCATGAGCTAAAACAGAAGGCGGCGGCGTTGTTTGTGTTTGGGGACTCACTCTTTGATATTGGCAATAATCAATACCTTAATACTAGCGCACGAGAATTATCGGCAACATACTGGCCATATGGAGAAAACTTCTTCCATCATCCCACCGGGAGATTTTCCGACGGTCGTTTAGTCCCTGATTTCATCCGACAGTTTGCAAAGTTGCCCATCATTCCACCGTACCTGCAACCTGGTCCCCATAATTTTACTGACGGAACCAACTTTGCTTCAGCCGACGCCGGTATTCTTCCTGAAACCAATCCAGGAACAGTAAGTCTTCCATTGCAGCTAAGCTATTTTAAGGCCGCGAAGAAGTTGCTGCAACAACAACTTGGTGATGAAGAGGCCAAGAGTTTGCTGGGGAGAGCTGTTTACTTGATCAGCATTGGTGGCAATGATTATTTTAGCTTCTACGCCAATTACCCCTACGCCAATGAGACCATCCAGCAAGAATTTGTAGCTATTGTGATCAGCAAGTTGACCATTGTGCTCCAATCGGCACCGACGGCGGTGGTACGGCCTGTTTTCGGCTGGTTTCGGCATGTTCGGGAATTTCAGCCACCCCTATACAACACTGAACTTAGTGATGGGTGTGTTGAAGAACTCGAGAGTTTGATAAGGCTACACAATACAGCTCTGGCAAATGTCCTCAAAGAGTTGGAGAGCCAGAAGCCAGGGTTCAAATACTCAGTTTTTGAGTACTATGATGCGATTGGAGATCGAATGCATAGCCCAGCAAAATATGGCTTTACTGACGGCTCAGATGCGTGTTGTGGTATTGGAGCATACTGGGGATCTGGTTGCGGTAATGAAACAAAAGGGTATGAGTTATGTAGTGACCCTGGGAATTATGTGTGGTTCGATGGTAGCCATACCACTGAAAAAGTCAACCTACAATTAGCAAAGCTGATATGGAGTGGAACACCAGATGTAACTGGGCCTTACAATGTTAAACAACTTTTTGGACATGTTTGA

Protein Analysis

350

Amino Acids

39.02

Weight (kDa)

5.5

Isoelectric Point (pI)

31.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 23 - 330 5.9e-24 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000443)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica MD09G1175400.v1.1
pyrus_communis pycom09g09260
rosa_chinensis RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 270
AccB1I GGYRCC 1 cut(s) 577
AccII CGCG 1 cut(s) 386
AciI CCGC 5 cut(s) 59, 62, 384, 587, 882
AclWI GGATC 1 cut(s) 880
AcoI YGGCCR 1 cut(s) 152
AcsI RAATTY 2 cut(s) 530, 629
AcuI CTGAAG 1 cut(s) 291
AcyI GRCGYC 1 cut(s) 315
AfaI GTAC 3 cut(s) 260, 594, 779
AfiI CCNNNNNNNGG 1 cut(s) 605
AflIII ACRYGT 1 cut(s) 1045
AgsI TTSAA 2 cut(s) 677, 760
AjnI CCWGG 4 cut(s) 268, 340, 751, 919
AluBI AGCT 8 cut(s) 46, 367, 372, 446, 486, 539, 713, 985
AluI AGCT 8 cut(s) 46, 367, 372, 446, 486, 539, 713, 985
Alw21I GWGCWC 1 cut(s) 570
Alw26I GTCTC 1 cut(s) 509
AlwI GGATC 1 cut(s) 880
Ama87I CYCGRG 1 cut(s) 683
AoxI GGCC 5 cut(s) 152, 381, 423, 596, 1016
ApeKI GCWGC 2 cut(s) 364, 397
ApoI RAATTY 2 cut(s) 530, 629
ArsI GACNNNNNNTTYG 2 cut(s) 74, 106
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 2 cut(s) 272, 1016
AsuC2I CCSGG 1 cut(s) 187
AsuHPI GGTGA 1 cut(s) 425
AvaI CYCGRG 1 cut(s) 683
AvaII GGWCC 1 cut(s) 272
BalI TGGCCA 1 cut(s) 154
BanI GGYRCC 1 cut(s) 577
BauI CACGAG 1 cut(s) 129
BbsI GAAGAC 3 cut(s) 14, 23, 347
Bbv12I GWGCWC 1 cut(s) 570
BbvI GCAGC 2 cut(s) 376, 384
BccI CCATC 5 cut(s) 183, 254, 527, 659, 935
BceAI ACGGC 3 cut(s) 600, 611, 850
BcgI CGANNNNNNTGC 2 cut(s) 376, 410
BciT130I CCWGG 4 cut(s) 270, 342, 753, 921
BclI TGATCA 2 cut(s) 456, 546
BcnI CCSGG 1 cut(s) 187
BcoDI GTCTC 1 cut(s) 509
BfaI CTAG 1 cut(s) 123
BfuAI ACCTGC 1 cut(s) 270
BisI GCNGC 5 cut(s) 60, 63, 365, 384, 398
BlpI GCTNAGC 1 cut(s) 368
BlsI GCNGC 5 cut(s) 61, 64, 366, 385, 399
BmcAI AGTACT 1 cut(s) 779
Bme1390I CCNGG 5 cut(s) 187, 270, 342, 753, 921
Bme18I GGWCC 1 cut(s) 272
BmeT110I CYCGRG 1 cut(s) 683
BmgT120I GGNCC 2 cut(s) 272, 1016
BmiI GGNNCC 4 cut(s) 27, 274, 295, 579
BmrFI CCNGG 5 cut(s) 187, 270, 342, 753, 921
BmrI ACTGGG 2 cut(s) 877, 1023
BmsI GCATC 2 cut(s) 775, 832
BmuI ACTGGG 2 cut(s) 877, 1023
BpiI GAAGAC 3 cut(s) 14, 23, 347
Bpu1102I GCTNAGC 1 cut(s) 368
BpuMI CCSGG 1 cut(s) 187
BsaHI GRCGYC 1 cut(s) 315
BsaI GGTCTC 1 cut(s) 509
BsaJI CCNNGG 3 cut(s) 752, 919, 920
Bsc4I CCNNNNNNNGG 1 cut(s) 605
Bse118I RCCGGY 2 cut(s) 28, 317
Bse1I ACTGG 3 cut(s) 155, 872, 1018
Bse3DI GCAATG 2 cut(s) 359, 478
BseBI CCWGG 4 cut(s) 270, 342, 753, 921
BseDI CCNNGG 3 cut(s) 752, 919, 920
BseGI GGATG 3 cut(s) 178, 222, 519
BseLI CCNNNNNNNGG 1 cut(s) 605
BseMI GCAATG 2 cut(s) 359, 478
BseMII CTCAG 2 cut(s) 780, 852
BseNI ACTGG 3 cut(s) 155, 872, 1018
BseRI GAGGAG 1 cut(s) 38
BseXI GCAGC 2 cut(s) 376, 384
BseYI CCCAGC 2 cut(s) 436, 811
Bsh1236I CGCG 1 cut(s) 386
Bsh1285I CGRYCG 1 cut(s) 205
BshFI GGCC 5 cut(s) 154, 383, 425, 598, 1018
BshNI GGYRCC 1 cut(s) 577
BsiEI CGRYCG 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 570
BsiHKCI CYCGRG 1 cut(s) 683
BsiSI CCGG 3 cut(s) 29, 186, 318
BslFI GGGAC 3 cut(s) 95, 197, 258
BslI CCNNNNNNNGG 1 cut(s) 605
BsmAI GTCTC 1 cut(s) 509
BsmFI GGGAC 3 cut(s) 95, 197, 258
BsmI GAATGC 1 cut(s) 807
BsnI GGCC 5 cut(s) 154, 383, 425, 598, 1018
Bso31I GGTCTC 1 cut(s) 509
BsoBI CYCGRG 1 cut(s) 683
Bsp1286I GDGCHC 1 cut(s) 570
Bsp143I GATC 4 cut(s) 456, 546, 796, 872
Bsp1720I GCTNAGC 1 cut(s) 368
BspACI CCGC 5 cut(s) 59, 62, 384, 587, 882
BspANI GGCC 5 cut(s) 154, 383, 425, 598, 1018
BspCNI CTCAG 2 cut(s) 779, 851
BspFNI CGCG 1 cut(s) 386
BspHI TCATGA 1 cut(s) 40
BspLI GGNNCC 4 cut(s) 27, 274, 295, 579
BspMI ACCTGC 1 cut(s) 270
BspPI GGATC 1 cut(s) 880
BspT107I GGYRCC 1 cut(s) 577
BspTNI GGTCTC 1 cut(s) 509
BsrDI GCAATG 2 cut(s) 359, 478
BsrFI RCCGGY 2 cut(s) 28, 317
BsrI ACTGG 3 cut(s) 155, 872, 1018
BssAI RCCGGY 2 cut(s) 28, 317
BssECI CCNNGG 3 cut(s) 752, 919, 920
BssMI GATC 4 cut(s) 456, 546, 796, 872
BssNI GRCGYC 1 cut(s) 315
BssSI CACGAG 1 cut(s) 129
Bst2BI CACGAG 1 cut(s) 129
Bst2UI CCWGG 4 cut(s) 270, 342, 753, 921
Bst4CI ACNGT 4 cut(s) 203, 231, 258, 349
Bst6I CTCTTC 1 cut(s) 414
BstACI GRCGYC 1 cut(s) 315
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 4 cut(s) 368, 659, 766, 838
BstF5I GGATG 3 cut(s) 178, 222, 519
BstFNI CGCG 1 cut(s) 386
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 4 cut(s) 459, 549, 799, 875
BstMAI GTCTC 1 cut(s) 509
BstMBI GATC 4 cut(s) 456, 546, 796, 872
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 2 cut(s) 468, 584
BstNI CCWGG 4 cut(s) 270, 342, 753, 921
BstNSI RCATGY 2 cut(s) 623, 1049
BstSCI CCNGG 5 cut(s) 185, 268, 340, 751, 919
BstUI CGCG 1 cut(s) 386
BstV1I GCAGC 2 cut(s) 376, 384
BstV2I GAAGAC 3 cut(s) 14, 23, 347
BstX2I RGATCY 1 cut(s) 872
BstYI RGATCY 1 cut(s) 872
BsuRI GGCC 5 cut(s) 154, 383, 425, 598, 1018
BtsCI GGATG 3 cut(s) 178, 222, 519
BtsIMutI CAGTG 2 cut(s) 651, 954
BveI ACCTGC 1 cut(s) 270
Cac8I GCNNGC 1 cut(s) 30
CciI TCATGA 1 cut(s) 40
CfoI GCGC 1 cut(s) 128
Cfr10I RCCGGY 2 cut(s) 28, 317
Cfr13I GGNCC 2 cut(s) 272, 1016
CseI GACGC 1 cut(s) 323
CsiI ACCWGGT 1 cut(s) 268
Csp6I GTAC 3 cut(s) 259, 593, 778
CviAII CATG 3 cut(s) 41, 620, 1046
CviQI GTAC 3 cut(s) 259, 593, 778
DdeI CTNAG 4 cut(s) 368, 659, 766, 838
DpnI GATC 4 cut(s) 458, 548, 798, 874
DpnII GATC 4 cut(s) 456, 546, 796, 872
EaeI YGGCCR 1 cut(s) 152
Eam1104I CTCTTC 1 cut(s) 414
EarI CTCTTC 1 cut(s) 414
Eco31I GGTCTC 1 cut(s) 509
Eco47I GGWCC 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 291
Eco88I CYCGRG 1 cut(s) 683
EcoRII CCWGG 4 cut(s) 268, 340, 751, 919
EcoT22I ATGCAT 1 cut(s) 807
FaeI CATG 3 cut(s) 44, 623, 1049
FaqI GGGAC 3 cut(s) 95, 197, 258
FatI CATG 3 cut(s) 40, 619, 1045
FauNDI CATATG 1 cut(s) 157
FbaI TGATCA 2 cut(s) 456, 546
Fnu4HI GCNGC 5 cut(s) 60, 63, 365, 384, 398
FokI GGATG 3 cut(s) 165, 209, 506
Fsp4HI GCNGC 5 cut(s) 60, 63, 365, 384, 398
FspBI CTAG 1 cut(s) 123
GlaI GCGC 1 cut(s) 127
GluI GCNGC 5 cut(s) 60, 63, 365, 384, 398
GsaI CCCAGC 2 cut(s) 440, 815
HaeIII GGCC 5 cut(s) 154, 383, 425, 598, 1018
HapII CCGG 3 cut(s) 29, 186, 318
HgaI GACGC 1 cut(s) 323
HhaI GCGC 1 cut(s) 128
Hin1I GRCGYC 1 cut(s) 315
Hin1II CATG 3 cut(s) 44, 623, 1049
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HincII GTYRAC 2 cut(s) 558, 967
HindII GTYRAC 2 cut(s) 558, 967
HinfI GANTC 1 cut(s) 83
HpaII CCGG 3 cut(s) 29, 186, 318
HphI GGTGA 1 cut(s) 425
Hpy166II GTNNAC 3 cut(s) 451, 558, 967
Hpy188I TCNGA 3 cut(s) 199, 227, 841
Hpy188III TCNNGA 4 cut(s) 41, 329, 626, 685
Hpy8I GTNNAC 3 cut(s) 451, 558, 967
Hpy99I CGWCG 3 cut(s) 203, 317, 586
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 4 cut(s) 203, 231, 258, 349
HpyCH4V TGCA 5 cut(s) 236, 265, 364, 400, 805
HpyF10VI GCNNNNNNNGC 2 cut(s) 468, 584
HpyF3I CTNAG 4 cut(s) 368, 659, 766, 838
Hsp92I GRCGYC 1 cut(s) 315
Hsp92II CATG 3 cut(s) 44, 623, 1049
HspAI GCGC 1 cut(s) 126
KroI GCCGGC 1 cut(s) 28
KroNI GCCGGC 1 cut(s) 30
Ksp22I TGATCA 2 cut(s) 456, 546
Kzo9I GATC 4 cut(s) 456, 546, 796, 872
LmnI GCTCC 3 cut(s) 25, 573, 860
Lsp1109I GCAGC 2 cut(s) 376, 384
LweI GCATC 2 cut(s) 775, 832
MabI ACCWGGT 1 cut(s) 268
MaeI CTAG 1 cut(s) 123
MaeIII GTNAC 2 cut(s) 914, 1009
MalI GATC 4 cut(s) 458, 548, 798, 874
MboI GATC 4 cut(s) 456, 546, 796, 872
MboII GAAGA 9 cut(s) 16, 19, 28, 163, 317, 347, 400, 431, 689
MflI RGATCY 1 cut(s) 872
MhlI GDGCHC 1 cut(s) 570
MlsI TGGCCA 1 cut(s) 154
MluCI AATT 7 cut(s) 134, 280, 496, 530, 629, 925, 974
MluNI TGGCCA 1 cut(s) 154
MlyI GAGTC 1 cut(s) 77
MmeI TCCRAC 3 cut(s) 222, 250, 717
MnlI CCTC 3 cut(s) 16, 415, 737
Mox20I TGGCCA 1 cut(s) 154
Mph1103I ATGCAT 1 cut(s) 807
MroNI GCCGGC 1 cut(s) 28
MscI TGGCCA 1 cut(s) 154
MseI TTAA 3 cut(s) 117, 378, 1029
Msp20I TGGCCA 1 cut(s) 154
MspI CCGG 3 cut(s) 29, 186, 318
MspR9I CCNGG 5 cut(s) 187, 270, 342, 753, 921
Mva1269I GAATGC 1 cut(s) 807
MvaI CCWGG 4 cut(s) 270, 342, 753, 921
MvnI CGCG 1 cut(s) 386
MwoI GCNNNNNNNGC 2 cut(s) 468, 584
NaeI GCCGGC 1 cut(s) 30
NciI CCSGG 1 cut(s) 187
NdeI CATATG 1 cut(s) 157
NdeII GATC 4 cut(s) 456, 546, 796, 872
NgoMIV GCCGGC 1 cut(s) 28
NlaIII CATG 3 cut(s) 44, 623, 1049
NlaIV GGNNCC 4 cut(s) 27, 274, 295, 579
NmuCI GTSAC 1 cut(s) 914
NsiI ATGCAT 1 cut(s) 807
NspI RCATGY 2 cut(s) 623, 1049
PaeR7I CTCGAG 1 cut(s) 683
PagI TCATGA 1 cut(s) 40
PasI CCCWGGG 1 cut(s) 920
PciI ACATGT 1 cut(s) 1045
PctI GAATGC 1 cut(s) 807
PdiI GCCGGC 1 cut(s) 30
PfoI TCCNGGA 1 cut(s) 340
PkrI GCNGC 5 cut(s) 61, 64, 366, 385, 399
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
PscI ACATGT 1 cut(s) 1045
Psp6I CCWGG 4 cut(s) 268, 340, 751, 919
PspFI CCCAGC 2 cut(s) 436, 811
PspGI CCWGG 4 cut(s) 268, 340, 751, 919
PspN4I GGNNCC 4 cut(s) 27, 274, 295, 579
PspPI GGNCC 2 cut(s) 272, 1016
PsuI RGATCY 1 cut(s) 872
RsaI GTAC 3 cut(s) 260, 594, 779
RsaNI GTAC 3 cut(s) 259, 593, 778
SaqAI TTAA 3 cut(s) 117, 378, 1029
SatI GCNGC 5 cut(s) 60, 63, 365, 384, 398
Sau3AI GATC 4 cut(s) 456, 546, 796, 872
Sau96I GGNCC 2 cut(s) 272, 1016
ScaI AGTACT 1 cut(s) 779
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 5 cut(s) 187, 270, 342, 753, 921
SduI GDGCHC 1 cut(s) 570
SexAI ACCWGGT 1 cut(s) 268
SfaNI GCATC 2 cut(s) 775, 832
Sfr274I CTCGAG 1 cut(s) 683
SinI GGWCC 1 cut(s) 272
SlaI CTCGAG 1 cut(s) 683
SmlI CTYRAG 1 cut(s) 683
SmoI CTYRAG 1 cut(s) 683
Sse9I AATT 7 cut(s) 134, 280, 496, 530, 629, 925, 974
SsiI CCGC 5 cut(s) 59, 62, 384, 587, 882
SspMI CTAG 1 cut(s) 123
StyD4I CCNGG 5 cut(s) 185, 268, 340, 751, 919
TaaI ACNGT 4 cut(s) 203, 231, 258, 349
TaqI TCGA 3 cut(s) 684, 799, 939
TasI AATT 7 cut(s) 134, 280, 496, 530, 629, 925, 974
TatI WGTACW 1 cut(s) 777
TauI GCSGC 3 cut(s) 62, 65, 386
Tru1I TTAA 3 cut(s) 117, 378, 1029
Tru9I TTAA 3 cut(s) 117, 378, 1029
TscAI CASTG 2 cut(s) 658, 961
TseFI GTSAC 1 cut(s) 914
TseI GCWGC 2 cut(s) 364, 397
Tsp45I GTSAC 1 cut(s) 914
TspDTI ATGAA 4 cut(s) 17, 211, 432, 903
TspGWI ACGGA 1 cut(s) 306
TspRI CASTG 2 cut(s) 658, 961
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 2 cut(s) 530, 629
XceI RCATGY 2 cut(s) 623, 1049
XcmI CCANNNNNNNNNTGG 1 cut(s) 433
XhoI CTCGAG 1 cut(s) 683
XspI CTAG 1 cut(s) 123
ZrmI AGTACT 1 cut(s) 779
Zsp2I ATGCAT 1 cut(s) 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.