Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008515

Physical Location & Seq

Genomic Coordinates Reverse (-)

27267715 .. 27271554

Gene Structure 3840 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g34550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGCAAGTGGCCTACCGGTTGTTGTCTAGTTGGGTGTGTGCTTCCAGCCTTCCCAATCTAGAGCTCCAGAGAGATCGTCTCCCTCAACCTCATTCTCAGTCACCAGTGGTAGCAGCTCCAGCGACAATGGGGATCATTGAAAGGATCAAAGAAATTGAGGCCGAAATGGCTCGCACTCAGAAAAACAAAGCCACAGAGTATCATCTTGGTCAGCTCAAGGCTAAAATTGCGAAGCTAAGGACTCAGCTCTTGGAGCCTCCTAAAGGTTCTAGTGGAGGTGGAGATGGTTTTGAAGTTACAAAGTTTGGACATGGTCGTGTTGCTCTTATTGGTTTTCCAAGTGTGGGTAAGTCAACACTTTTGACAATGTTGACGGGGACGCACTCTGAAGCTGCTTCTTACGAGTTCACAACACTTACCTGCATTCCCGGGATTATACACTATAATGACACAAAAATTCAGTTGCTTGATCTTCCTGGAATTATTGAAGGTGCTTCTGAAGGCAAAGGTCGTGGGAGGCAGGTTATTGCTGTTGCAAAGTCATCAGATATTGTGTTGATGGTACTTGATGCCTCAAAAAGTGAAGGTCATCGGCAAATTTTGACAAAGGAGCTGGAAGCTGTGGGTTTGCGTTTAAATAAGAGACCACCACAGATATATTTCAAAAAGAAAAAAACTGGAGGTATTTCTTTTAACAGCACTCTCCCTTTAACTCATGTGGACGAGAAGCTCTGTTATCAAATTCTGCACGAATACAAAATTCATAATGCTGAGTTGTTGTTTCGTGAGGATGCCACAGTGGACGATCTTATCGATGTAATTGAGGGTAACAGAAAATACATGAAGTGTGTATATGTATACAACAAGATAGATGTTATTGGTATCGATGATGTGGACAAGTTAGCCCGGCAACCTAATTCGATTGTCATTAGTTGCAATCTGAAGCTGAACTTAGACAGACTACTCGCAAAGATGTGGGAGGAGATGGGACTTGTTAGAGTTTATACAAAACCACAGGGCCAGCAACCTGATTTTGGTGATCCTGTAGTTCTTTCTGCTGATAGAGGTGGCTGCACGGTTGAGGACTTTTGTAACCATATCCACAGGAGTCTGCTGAAGGAGGTAAAGTATGTGCTAGTGTGGGGTACAAGTGCAAGGCATTACCCTCAGCATTGTGGTGTCAGTCACCTTCTTAACGATGAAGACGTGGTTCAGATTGTAAAGAAAAAGGACAAAGAAGGGGAAGGGAGGGGTCGGTTCAAGTCACATTCGACAGCCCCTGCCCGTATAGCTGACAGAGAGAAGAAGGCTCCCCTGAAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008289 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019003 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0070300 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1 MMR_HSR1_Xtn TGS

Protein Analysis

442

Amino Acids

49.12

Weight (kDa)

9.02

Isoelectric Point (pI)

36.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	106 - 222	1e-23	50S ribosome-binding GTPase
FeoB_N	PF02421	106 - 201	3.2e-12	Ferrous iron transport protein B
MMR_HSR1_Xtn	PF16897	226 - 331	9.6e-42	C-terminal region of MMR_HSR1 domain
TGS	PF02824	332 - 408	3.5e-19	TGS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17470 AT1G17470 AT1G72660 AT1G72660 AT1G72660 AT1G72660
fragaria_vesca	FvH4_6g34550
malus_domestica	MD09G1184900.v1.1 MD17G1168800.v1.1
prunus_persica	Prupe.3G043000_v2.0.a1 Prupe.3G043000_v2.0.a1
pyrus_communis	pycom09g10250 pycom17g16710
rosa_chinensis	RchiOBHm_Chr2g0145081
rosa_laevigata	RLG00000020123
rosa_multiflora	Rmu_sc0002506.1_g000023 Rmu_sc0017273.1_g000007
rosa_roxburghii	Rroxscaffold_2G00100890
rosa_rugosa	Rorug02G0390200 Rorug02G0390200
rosa_samantha	Rh2BG453800 Rh2CG429800
rosa_wichuraiana	Rw2G036190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	428, 511
AccI	GTMKAC	1 cut(s)	858
AclWI	GGATC	3 cut(s)	140, 152, 1034
AcsI	RAATTY	4 cut(s)	456, 597, 741, 759
AcuI	CTGAAG	4 cut(s)	408, 519, 962, 1136
AfaI	GTAC	2 cut(s)	564, 1147
AfiI	CCNNNNNNNGG	3 cut(s)	263, 344, 1034
AgeI	ACCGGT	1 cut(s)	15
AgsI	TTSAA	5 cut(s)	140, 293, 488, 664, 1261
AjiI	CACGTC	1 cut(s)	1207
AjnI	CCWGG	1 cut(s)	475
Alw21I	GWGCWC	1 cut(s)	66
Alw26I	GTCTC	2 cut(s)	83, 637
AlwI	GGATC	3 cut(s)	140, 152, 1034
AlwNI	CAGNNNCTG	1 cut(s)	1280
Ama87I	CYCGRG	1 cut(s)	428
AoxI	GGCC	3 cut(s)	9, 159, 1018
ApeKI	GCWGC	3 cut(s)	113, 392, 1071
ApoI	RAATTY	4 cut(s)	456, 597, 741, 759
AsiGI	ACCGGT	1 cut(s)	15
AspS9I	GGNCC	1 cut(s)	1018
AsuC2I	CCSGG	3 cut(s)	429, 430, 907
AsuHPI	GGTGA	3 cut(s)	93, 1049, 1178
AvaI	CYCGRG	1 cut(s)	428
BanII	GRGCYC	1 cut(s)	66
BbsI	GAAGAC	1 cut(s)	1209
Bbv12I	GWGCWC	1 cut(s)	66
BbvCI	CCTCAGC	1 cut(s)	1167
BbvI	GCAGC	3 cut(s)	125, 379, 1058
BccI	CCATC	3 cut(s)	278, 553, 979
BciT130I	CCWGG	1 cut(s)	477
BcnI	CCSGG	3 cut(s)	429, 430, 907
BcoDI	GTCTC	2 cut(s)	83, 637
BfaI	CTAG	4 cut(s)	27, 59, 270, 1136
BfmI	CTRYAG	1 cut(s)	1044
BfuAI	ACCTGC	2 cut(s)	428, 511
BglI	GCCNNNNNGGC	1 cut(s)	167
BisI	GCNGC	3 cut(s)	114, 393, 1072
BlsI	GCNGC	3 cut(s)	115, 394, 1073
Bme1390I	CCNGG	4 cut(s)	429, 430, 477, 907
BmeT110I	CYCGRG	1 cut(s)	428
BmgBI	CACGTC	1 cut(s)	1207
BmgT120I	GGNCC	1 cut(s)	1018
BmiI	GGNNCC	2 cut(s)	255, 1311
BmrFI	CCNGG	4 cut(s)	429, 430, 477, 907
BmsI	GCATC	2 cut(s)	559, 781
BpiI	GAAGAC	1 cut(s)	1209
BplI	GAGNNNNNCTC	2 cut(s)	63, 95
BpmI	CTGGAG	3 cut(s)	50, 102, 699
Bpu10I	CCTNAGC	2 cut(s)	236, 1167
BpuEI	CTTGAG	1 cut(s)	200
BpuMI	CCSGG	3 cut(s)	429, 430, 907
Bsa29I	ATCGAT	2 cut(s)	813, 885
BsaI	GGTCTC	1 cut(s)	637
BsaJI	CCNNGG	1 cut(s)	428
BsaWI	WCCGGW	1 cut(s)	15
BsaXI	ACNNNNNCTCC	2 cut(s)	1112, 1142
Bsc4I	CCNNNNNNNGG	3 cut(s)	263, 344, 1034
Bse118I	RCCGGY	1 cut(s)	15
Bse1I	ACTGG	2 cut(s)	104, 682
BseBI	CCWGG	1 cut(s)	477
BseCI	ATCGAT	2 cut(s)	813, 885
BseDI	CCNNGG	1 cut(s)	428
BseGI	GGATG	1 cut(s)	796
BseLI	CCNNNNNNNGG	3 cut(s)	263, 344, 1034
BseMII	CTCAG	5 cut(s)	110, 191, 257, 762, 1181
BseNI	ACTGG	2 cut(s)	104, 682
BseRI	GAGGAG	1 cut(s)	995
BseXI	GCAGC	3 cut(s)	125, 379, 1058
BsgI	GTGCAG	2 cut(s)	731, 1057
BshFI	GGCC	3 cut(s)	11, 161, 1020
BshTI	ACCGGT	1 cut(s)	15
BshVI	ATCGAT	2 cut(s)	813, 885
BsiHKAI	GWGCWC	1 cut(s)	66
BsiHKCI	CYCGRG	1 cut(s)	428
BsiSI	CCGG	3 cut(s)	16, 429, 907
BslFI	GGGAC	2 cut(s)	391, 1002
BslI	CCNNNNNNNGG	3 cut(s)	263, 344, 1034
BsmAI	GTCTC	2 cut(s)	83, 637
BsmBI	CGTCTC	1 cut(s)	83
BsmFI	GGGAC	2 cut(s)	391, 1002
BsmI	GAATGC	1 cut(s)	423
BsnI	GGCC	3 cut(s)	11, 161, 1020
Bso31I	GGTCTC	1 cut(s)	637
BsoBI	CYCGRG	1 cut(s)	428
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp143I	GATC	6 cut(s)	73, 132, 144, 469, 805, 1039
BspANI	GGCC	3 cut(s)	11, 161, 1020
BspCNI	CTCAG	5 cut(s)	109, 190, 256, 763, 1180
BspDI	ATCGAT	2 cut(s)	813, 885
BspLI	GGNNCC	2 cut(s)	255, 1311
BspMI	ACCTGC	2 cut(s)	428, 511
BspPI	GGATC	3 cut(s)	140, 152, 1034
BspTNI	GGTCTC	1 cut(s)	637
BsrFI	RCCGGY	1 cut(s)	15
BsrI	ACTGG	2 cut(s)	104, 682
BssAI	RCCGGY	1 cut(s)	15
BssECI	CCNNGG	1 cut(s)	428
BssMI	GATC	6 cut(s)	73, 132, 144, 469, 805, 1039
BssNAI	GTATAC	1 cut(s)	859
Bst1107I	GTATAC	1 cut(s)	859
Bst2UI	CCWGG	1 cut(s)	477
Bst4CI	ACNGT	2 cut(s)	799, 1078
BstC8I	GCNNGC	2 cut(s)	172, 1022
BstDEI	CTNAG	7 cut(s)	96, 177, 236, 243, 771, 952, 1167
BstENI	CCTNNNNNAGG	1 cut(s)	261
BstF5I	GGATG	1 cut(s)	796
BstKTI	GATC	6 cut(s)	76, 135, 147, 472, 808, 1042
BstMAI	GTCTC	2 cut(s)	83, 637
BstMBI	GATC	6 cut(s)	73, 132, 144, 469, 805, 1039
BstMWI	GCNNNNNNNGC	5 cut(s)	119, 167, 227, 253, 1289
BstNI	CCWGG	1 cut(s)	477
BstSCI	CCNGG	4 cut(s)	427, 428, 475, 905
BstSFI	CTRYAG	1 cut(s)	1044
BstV1I	GCAGC	3 cut(s)	125, 379, 1058
BstV2I	GAAGAC	1 cut(s)	1209
BstZ17I	GTATAC	1 cut(s)	859
Bsu15I	ATCGAT	2 cut(s)	813, 885
BsuRI	GGCC	3 cut(s)	11, 161, 1020
BsuTUI	ATCGAT	2 cut(s)	813, 885
BtrI	CACGTC	1 cut(s)	1207
BtsCI	GGATG	1 cut(s)	796
BtsIMutI	CAGTG	2 cut(s)	111, 804
BveI	ACCTGC	2 cut(s)	428, 511
Cac8I	GCNNGC	2 cut(s)	172, 1022
CaiI	CAGNNNCTG	1 cut(s)	1280
Cfr10I	RCCGGY	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	1018
Cfr9I	CCCGGG	1 cut(s)	428
ClaI	ATCGAT	2 cut(s)	813, 885
CseI	GACGC	1 cut(s)	388
Csp6I	GTAC	2 cut(s)	563, 1146
CspAI	ACCGGT	1 cut(s)	15
CspCI	CAANNNNNGTGG	2 cut(s)	493, 528
CviAII	CATG	3 cut(s)	311, 716, 841
CviQI	GTAC	2 cut(s)	563, 1146
DdeI	CTNAG	7 cut(s)	96, 177, 236, 243, 771, 952, 1167
DpnI	GATC	6 cut(s)	75, 134, 146, 471, 807, 1041
DpnII	GATC	6 cut(s)	73, 132, 144, 469, 805, 1039
DraI	TTTAAA	1 cut(s)	636
Ecl136II	GAGCTC	1 cut(s)	64
Eco24I	GRGCYC	1 cut(s)	66
Eco31I	GGTCTC	1 cut(s)	637
Eco53kI	GAGCTC	1 cut(s)	64
Eco57I	CTGAAG	4 cut(s)	408, 519, 962, 1136
Eco88I	CYCGRG	1 cut(s)	428
EcoICRI	GAGCTC	1 cut(s)	64
EcoNI	CCTNNNNNAGG	1 cut(s)	261
EcoRII	CCWGG	1 cut(s)	475
EcoT38I	GRGCYC	1 cut(s)	66
Esp3I	CGTCTC	1 cut(s)	83
FaeI	CATG	3 cut(s)	314, 719, 844
FalI	AAGNNNNNCTT	2 cut(s)	935, 967
FaqI	GGGAC	2 cut(s)	391, 1002
FatI	CATG	3 cut(s)	310, 715, 840
FblI	GTMKAC	1 cut(s)	858
Fnu4HI	GCNGC	3 cut(s)	114, 393, 1072
FokI	GGATG	1 cut(s)	803
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	3 cut(s)	114, 393, 1072
FspBI	CTAG	4 cut(s)	27, 59, 270, 1136
GluI	GCNGC	3 cut(s)	114, 393, 1072
GsuI	CTGGAG	3 cut(s)	50, 102, 699
HaeIII	GGCC	3 cut(s)	11, 161, 1020
HapII	CCGG	3 cut(s)	16, 429, 907
HgaI	GACGC	1 cut(s)	388
Hin1II	CATG	3 cut(s)	314, 719, 844
HincII	GTYRAC	2 cut(s)	354, 372
HindII	GTYRAC	2 cut(s)	354, 372
HinfI	GANTC	2 cut(s)	241, 1108
HpaII	CCGG	3 cut(s)	16, 429, 907
HphI	GGTGA	3 cut(s)	93, 1049, 1178
Hpy166II	GTNNAC	7 cut(s)	354, 372, 408, 721, 802, 859, 895
Hpy188I	TCNGA	6 cut(s)	180, 388, 499, 547, 942, 1215
Hpy188III	TCNNGA	3 cut(s)	59, 67, 785
Hpy8I	GTNNAC	7 cut(s)	354, 372, 408, 721, 802, 859, 895
HpyAV	CCTTC	9 cut(s)	59, 482, 494, 578, 1111, 1199, 1232, 1238, 1300
HpyCH4III	ACNGT	2 cut(s)	799, 1078
HpyCH4IV	ACGT	1 cut(s)	1206
HpyCH4V	TGCA	7 cut(s)	4, 423, 536, 748, 936, 1074, 1154
HpyF10VI	GCNNNNNNNGC	5 cut(s)	119, 167, 227, 253, 1289
HpyF3I	CTNAG	7 cut(s)	96, 177, 236, 243, 771, 952, 1167
HpySE526I	ACGT	1 cut(s)	1206
Hsp92II	CATG	3 cut(s)	314, 719, 844
Kzo9I	GATC	6 cut(s)	73, 132, 144, 469, 805, 1039
LmnI	GCTCC	5 cut(s)	69, 121, 253, 610, 1315
Lsp1109I	GCAGC	3 cut(s)	125, 379, 1058
LweI	GCATC	2 cut(s)	559, 781
MaeI	CTAG	4 cut(s)	27, 59, 270, 1136
MaeII	ACGT	1 cut(s)	1206
MaeIII	GTNAC	6 cut(s)	99, 295, 827, 1091, 1184, 1263
MalI	GATC	6 cut(s)	75, 134, 146, 471, 807, 1041
MboI	GATC	6 cut(s)	73, 132, 144, 469, 805, 1039
MboII	GAAGA	3 cut(s)	464, 1214, 1315
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	9 cut(s)	153, 225, 456, 480, 597, 741, 759, 819, 916
MlyI	GAGTC	2 cut(s)	235, 1117
MseI	TTAA	4 cut(s)	635, 693, 710, 1194
MslI	CAYNNNNRTG	3 cut(s)	315, 444, 1176
MspI	CCGG	3 cut(s)	16, 429, 907
MspR9I	CCNGG	4 cut(s)	429, 430, 477, 907
Mva1269I	GAATGC	1 cut(s)	423
MvaI	CCWGG	1 cut(s)	477
MwoI	GCNNNNNNNGC	5 cut(s)	119, 167, 227, 253, 1289
NciI	CCSGG	3 cut(s)	429, 430, 907
NdeII	GATC	6 cut(s)	73, 132, 144, 469, 805, 1039
NlaIII	CATG	3 cut(s)	314, 719, 844
NlaIV	GGNNCC	2 cut(s)	255, 1311
NmuCI	GTSAC	3 cut(s)	99, 1184, 1263
PcsI	WCGNNNNNNNCGW	2 cut(s)	810, 1203
PctI	GAATGC	1 cut(s)	423
PflFI	GACNNNGTC	1 cut(s)	312
PfoI	TCCNGGA	1 cut(s)	475
PinAI	ACCGGT	1 cut(s)	15
PkrI	GCNGC	3 cut(s)	115, 394, 1073
PleI	GAGTC	2 cut(s)	235, 1116
PpsI	GAGTC	2 cut(s)	235, 1116
Psp124BI	GAGCTC	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	475
PspGI	CCWGG	1 cut(s)	475
PspN4I	GGNNCC	2 cut(s)	255, 1311
PspPI	GGNCC	1 cut(s)	1018
PstNI	CAGNNNCTG	1 cut(s)	1280
PsyI	GACNNNGTC	1 cut(s)	312
RsaI	GTAC	2 cut(s)	564, 1147
RsaNI	GTAC	2 cut(s)	563, 1146
RseI	CAYNNNNRTG	3 cut(s)	315, 444, 1176
SacI	GAGCTC	1 cut(s)	66
SaqAI	TTAA	4 cut(s)	635, 693, 710, 1194
SatI	GCNGC	3 cut(s)	114, 393, 1072
Sau3AI	GATC	6 cut(s)	73, 132, 144, 469, 805, 1039
Sau96I	GGNCC	1 cut(s)	1018
SchI	GAGTC	2 cut(s)	235, 1117
ScrFI	CCNGG	4 cut(s)	429, 430, 477, 907
SduI	GDGCHC	1 cut(s)	66
SfaNI	GCATC	2 cut(s)	559, 781
SfcI	CTRYAG	1 cut(s)	1044
SmaI	CCCGGG	1 cut(s)	430
SmiMI	CAYNNNNRTG	3 cut(s)	315, 444, 1176
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	9 cut(s)	153, 225, 456, 480, 597, 741, 759, 819, 916
SspMI	CTAG	4 cut(s)	27, 59, 270, 1136
SstI	GAGCTC	1 cut(s)	66
StyD4I	CCNGG	4 cut(s)	427, 428, 475, 905
TaaI	ACNGT	2 cut(s)	799, 1078
TaiI	ACGT	1 cut(s)	1209
TaqI	TCGA	4 cut(s)	813, 885, 920, 1271
TasI	AATT	9 cut(s)	153, 225, 456, 480, 597, 741, 759, 819, 916
Tru1I	TTAA	4 cut(s)	635, 693, 710, 1194
Tru9I	TTAA	4 cut(s)	635, 693, 710, 1194
TscAI	CASTG	2 cut(s)	111, 804
TseFI	GTSAC	3 cut(s)	99, 1184, 1263
TseI	GCWGC	3 cut(s)	113, 392, 1071
Tsp45I	GTSAC	3 cut(s)	99, 1184, 1263
TspDTI	ATGAA	3 cut(s)	752, 857, 1215
TspMI	CCCGGG	1 cut(s)	428
TspRI	CASTG	2 cut(s)	111, 804
Tth111I	GACNNNGTC	1 cut(s)	312
XagI	CCTNNNNNAGG	1 cut(s)	261
XapI	RAATTY	4 cut(s)	456, 597, 741, 759
XbaI	TCTAGA	1 cut(s)	58
XmaI	CCCGGG	1 cut(s)	428
XmiI	GTMKAC	1 cut(s)	858
XspI	CTAG	4 cut(s)	27, 59, 270, 1136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.