Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0008515

Physical Location & Seq

Genomic Coordinates Reverse (-)

58475623 .. 58479617

Gene Structure 3995 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG429800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGGGATCATTGAACGGATCAAAGAAATCGAGGCCGAAATGGCTCGGACTCAGAAAAACAAAGCCACAGAGTACCATCTTGGTCAGCTCAAGGCGAAGATTGCGAAGCTAAGGACTCAGCTGTTGGAGCCTCCAAAAGGTTCTAGTGGAGGTGGAGAGGGTTTCGAAGTTACAAAGTTTGGACACGGTCGTGTTGCCCTAATTGGGTTTCCAAGTGTGGGTAAGTCGACACTTTTGACAATGTTGACGGGGACGCACTCTGAAGCTGCTTCTTATGAGTTCACAACACTTACCTGCATTCCTGGGATTATACACTATAATGATACAAAAATTCAGTTGCTTGATCTTCCTGGAATTATTGAAGGTGCTTCTGAAGGCAAAGGTCGTGGGAGGCAGGTTATTGCTGTTGCAAAGTCGTCAGATATCGTGTTAATGGTACTTGATGCCTCAAAAAGTGAAGGTCATCGGCAAATTTTGACAAAGGAGCTGGAAGCTGTGGGTTTGCGTTTAAACAAGAGACCACCACAAATATATTTCAAAAAGAAAAAAACTGGAGGCATTTCTTTTAACAGCACTCTCCCTTTAACTCATGTGGACGAGAAGCTTTGTTATCAAATTCTGCACGAATACAAAATTCACAATGCTGAGTTGCTGTTTCGTGAGGATGCCACAGTGGATGATCTTATCGATGTAATTGAGGGTAACAGAAAATACATGAAGTGTGTATATGTATACAACAAGATAGATGTTATTGGTATTGATGATGTGGACAAATTAGCCCGGCAACCTAATTCTATTGTCATTAGCTGCAATCTGAAGCTGAACTTAGACAGATTACTCGCGAAGATGTGGGAGGAGATGGGACTTGTTAGAGTTTATACAAAGCCACAGGGCCAGCAACCTGATTTTGGTGATCCTGTAGTTCTTTCTGCTGTATGTTGTGAATCTTATATCCGATGTCTTTTTATCTATTTATTCTTCTTAGGTGTTTTATGGCTTCATTTGTTTCTTTCTCATATTAATCTTATGTGCAGGATAGAGGTGGCTGCACAGTCGAGGACTTTTGTAACCATATCCACAGGAGTCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008289 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019003 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0070300 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1 MMR_HSR1_Xtn TGS

Protein Analysis

363

Amino Acids

40.56

Weight (kDa)

8.59

Isoelectric Point (pI)

34.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	64 - 180	7.2e-24	50S ribosome-binding GTPase
FeoB_N	PF02421	64 - 159	2.3e-12	Ferrous iron transport protein B
MMR_HSR1_Xtn	PF16897	184 - 289	6.7e-42	C-terminal region of MMR_HSR1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17470 AT1G17470 AT1G72660 AT1G72660 AT1G72660 AT1G72660
fragaria_vesca	FvH4_6g34550
malus_domestica	MD09G1184900.v1.1 MD17G1168800.v1.1
prunus_persica	Prupe.3G043000_v2.0.a1 Prupe.3G043000_v2.0.a1
pyrus_communis	pycom09g10250 pycom17g16710
rosa_chinensis	RchiOBHm_Chr2g0145081
rosa_laevigata	RLG00000020123
rosa_multiflora	Rmu_sc0002506.1_g000023 Rmu_sc0017273.1_g000007
rosa_roxburghii	Rroxscaffold_2G00100890
rosa_rugosa	Rorug02G0390200 Rorug02G0390200
rosa_samantha	Rh2BG453800 Rh2CG429800
rosa_wichuraiana	Rw2G036190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	302, 385
AccI	GTMKAC	2 cut(s)	227, 732
AccII	CGCG	1 cut(s)	842
AclWI	GGATC	3 cut(s)	14, 26, 908
AcsI	RAATTY	4 cut(s)	330, 471, 615, 633
AcuI	CTGAAG	3 cut(s)	282, 393, 836
AfaI	GTAC	2 cut(s)	74, 438
AfiI	CCNNNNNNNGG	4 cut(s)	137, 204, 218, 908
AgsI	TTSAA	3 cut(s)	14, 362, 538
AjnI	CCWGG	2 cut(s)	301, 349
AleI	CACNNNNGTG	1 cut(s)	189
AluBI	AGCT	9 cut(s)	88, 109, 121, 266, 487, 494, 604, 807, 820
AluI	AGCT	9 cut(s)	88, 109, 121, 266, 487, 494, 604, 807, 820
Alw26I	GTCTC	1 cut(s)	511
AlwI	GGATC	3 cut(s)	14, 26, 908
AoxI	GGCC	2 cut(s)	33, 892
ApeKI	GCWGC	3 cut(s)	266, 807, 1046
ApoI	RAATTY	4 cut(s)	330, 471, 615, 633
AseI	ATTAAT	1 cut(s)	1020
AspS9I	GGNCC	1 cut(s)	892
AsuC2I	CCSGG	1 cut(s)	781
AsuHPI	GGTGA	1 cut(s)	923
AsuII	TTCGAA	1 cut(s)	165
BbvI	GCAGC	3 cut(s)	253, 794, 1033
BccI	CCATC	2 cut(s)	84, 853
BciT130I	CCWGG	2 cut(s)	303, 351
BcnI	CCSGG	1 cut(s)	781
BcoDI	GTCTC	1 cut(s)	511
BfaI	CTAG	1 cut(s)	144
BfmI	CTRYAG	1 cut(s)	918
BfuAI	ACCTGC	2 cut(s)	302, 385
BglI	GCCNNNNNGGC	1 cut(s)	41
BisI	GCNGC	3 cut(s)	267, 808, 1047
BlsI	GCNGC	3 cut(s)	268, 809, 1048
Bme1390I	CCNGG	3 cut(s)	303, 351, 781
BmgT120I	GGNCC	1 cut(s)	892
BmiI	GGNNCC	1 cut(s)	129
BmrFI	CCNGG	3 cut(s)	303, 351, 781
BmsI	GCATC	2 cut(s)	433, 655
BpmI	CTGGAG	1 cut(s)	573
Bpu10I	CCTNAGC	1 cut(s)	110
Bpu14I	TTCGAA	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	781
Bsa29I	ATCGAT	1 cut(s)	687
BsaI	GGTCTC	1 cut(s)	511
BsaJI	CCNNGG	1 cut(s)	302
Bsc4I	CCNNNNNNNGG	4 cut(s)	137, 204, 218, 908
Bse1I	ACTGG	1 cut(s)	556
BseBI	CCWGG	2 cut(s)	303, 351
BseCI	ATCGAT	1 cut(s)	687
BseDI	CCNNGG	1 cut(s)	302
BseGI	GGATG	2 cut(s)	670, 682
BseLI	CCNNNNNNNGG	4 cut(s)	137, 204, 218, 908
BseMII	CTCAG	3 cut(s)	65, 131, 636
BseNI	ACTGG	1 cut(s)	556
BseRI	GAGGAG	1 cut(s)	869
BseXI	GCAGC	3 cut(s)	253, 794, 1033
BsgI	GTGCAG	3 cut(s)	605, 1032, 1051
Bsh1236I	CGCG	1 cut(s)	842
Bsh1285I	CGRYCG	1 cut(s)	190
BshFI	GGCC	2 cut(s)	35, 894
BshVI	ATCGAT	1 cut(s)	687
BsiEI	CGRYCG	1 cut(s)	190
BsiSI	CCGG	1 cut(s)	781
BslFI	GGGAC	2 cut(s)	265, 876
BslI	CCNNNNNNNGG	4 cut(s)	137, 204, 218, 908
BsmAI	GTCTC	1 cut(s)	511
BsmFI	GGGAC	2 cut(s)	265, 876
BsmI	GAATGC	1 cut(s)	297
BsnI	GGCC	2 cut(s)	35, 894
Bso31I	GGTCTC	1 cut(s)	511
Bsp119I	TTCGAA	1 cut(s)	165
Bsp143I	GATC	5 cut(s)	6, 18, 343, 679, 913
Bsp68I	TCGCGA	1 cut(s)	842
BspANI	GGCC	2 cut(s)	35, 894
BspCNI	CTCAG	3 cut(s)	64, 130, 637
BspDI	ATCGAT	1 cut(s)	687
BspFNI	CGCG	1 cut(s)	842
BspLI	GGNNCC	1 cut(s)	129
BspMI	ACCTGC	2 cut(s)	302, 385
BspPI	GGATC	3 cut(s)	14, 26, 908
BspT104I	TTCGAA	1 cut(s)	165
BspTNI	GGTCTC	1 cut(s)	511
BsrI	ACTGG	1 cut(s)	556
BssECI	CCNNGG	1 cut(s)	302
BssMI	GATC	5 cut(s)	6, 18, 343, 679, 913
BssNAI	GTATAC	1 cut(s)	733
Bst1107I	GTATAC	1 cut(s)	733
Bst2UI	CCWGG	2 cut(s)	303, 351
Bst4CI	ACNGT	3 cut(s)	188, 673, 1053
BstBI	TTCGAA	1 cut(s)	165
BstC8I	GCNNGC	1 cut(s)	896
BstDEI	CTNAG	6 cut(s)	51, 110, 117, 645, 826, 982
BstENI	CCTNNNNNAGG	1 cut(s)	135
BstF5I	GGATG	2 cut(s)	670, 682
BstFNI	CGCG	1 cut(s)	842
BstKTI	GATC	5 cut(s)	9, 21, 346, 682, 916
BstMAI	GTCTC	1 cut(s)	511
BstMBI	GATC	5 cut(s)	6, 18, 343, 679, 913
BstMCI	CGRYCG	1 cut(s)	190
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 101, 127
BstNI	CCWGG	2 cut(s)	303, 351
BstSCI	CCNGG	3 cut(s)	301, 349, 779
BstSFI	CTRYAG	1 cut(s)	918
BstUI	CGCG	1 cut(s)	842
BstV1I	GCAGC	3 cut(s)	253, 794, 1033
BstZ17I	GTATAC	1 cut(s)	733
Bsu15I	ATCGAT	1 cut(s)	687
BsuRI	GGCC	2 cut(s)	35, 894
BsuTUI	ATCGAT	1 cut(s)	687
BtsCI	GGATG	2 cut(s)	670, 682
BtsIMutI	CAGTG	1 cut(s)	678
BtuMI	TCGCGA	1 cut(s)	842
BveI	ACCTGC	2 cut(s)	302, 385
Cac8I	GCNNGC	1 cut(s)	896
Cfr13I	GGNCC	1 cut(s)	892
ClaI	ATCGAT	1 cut(s)	687
CseI	GACGC	1 cut(s)	262
Csp6I	GTAC	2 cut(s)	73, 437
CspCI	CAANNNNNGTGG	2 cut(s)	367, 402
CviAII	CATG	2 cut(s)	590, 715
CviQI	GTAC	2 cut(s)	73, 437
DdeI	CTNAG	6 cut(s)	51, 110, 117, 645, 826, 982
DpnI	GATC	5 cut(s)	8, 20, 345, 681, 915
DpnII	GATC	5 cut(s)	6, 18, 343, 679, 913
DraI	TTTAAA	1 cut(s)	510
Eco31I	GGTCTC	1 cut(s)	511
Eco32I	GATATC	1 cut(s)	424
Eco57I	CTGAAG	3 cut(s)	282, 393, 836
EcoNI	CCTNNNNNAGG	1 cut(s)	135
EcoRII	CCWGG	2 cut(s)	301, 349
EcoRV	GATATC	1 cut(s)	424
FaeI	CATG	2 cut(s)	593, 718
FalI	AAGNNNNNCTT	2 cut(s)	809, 841
FaqI	GGGAC	2 cut(s)	265, 876
FatI	CATG	2 cut(s)	589, 714
FblI	GTMKAC	2 cut(s)	227, 732
Fnu4HI	GCNGC	3 cut(s)	267, 808, 1047
FokI	GGATG	2 cut(s)	677, 689
Fsp4HI	GCNGC	3 cut(s)	267, 808, 1047
FspBI	CTAG	1 cut(s)	144
GluI	GCNGC	3 cut(s)	267, 808, 1047
GsuI	CTGGAG	1 cut(s)	573
HaeIII	GGCC	2 cut(s)	35, 894
HapII	CCGG	1 cut(s)	781
HgaI	GACGC	1 cut(s)	262
Hin1II	CATG	2 cut(s)	593, 718
HincII	GTYRAC	2 cut(s)	228, 246
HindII	GTYRAC	2 cut(s)	228, 246
HindIII	AAGCTT	1 cut(s)	602
HinfI	GANTC	4 cut(s)	49, 115, 944, 1083
HpaII	CCGG	1 cut(s)	781
HphI	GGTGA	1 cut(s)	923
Hpy166II	GTNNAC	6 cut(s)	228, 246, 282, 595, 733, 769
Hpy188I	TCNGA	7 cut(s)	48, 54, 262, 373, 421, 816, 956
Hpy188III	TCNNGA	2 cut(s)	659, 841
Hpy8I	GTNNAC	6 cut(s)	228, 246, 282, 595, 733, 769
HpyAV	CCTTC	3 cut(s)	356, 368, 452
HpyCH4III	ACNGT	3 cut(s)	188, 673, 1053
HpyCH4V	TGCA	6 cut(s)	297, 410, 622, 810, 1032, 1049
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 101, 127
HpyF3I	CTNAG	6 cut(s)	51, 110, 117, 645, 826, 982
Hsp92II	CATG	2 cut(s)	593, 718
Kzo9I	GATC	5 cut(s)	6, 18, 343, 679, 913
LmnI	GCTCC	2 cut(s)	127, 484
Lsp1109I	GCAGC	3 cut(s)	253, 794, 1033
LweI	GCATC	2 cut(s)	433, 655
MaeI	CTAG	1 cut(s)	144
MaeIII	GTNAC	3 cut(s)	169, 701, 1066
MalI	GATC	5 cut(s)	8, 20, 345, 681, 915
MboI	GATC	5 cut(s)	6, 18, 343, 679, 913
MboII	GAAGA	4 cut(s)	109, 338, 856, 970
MluCI	AATT	9 cut(s)	201, 330, 354, 471, 615, 633, 693, 773, 790
MlyI	GAGTC	3 cut(s)	43, 109, 1092
MmeI	TCCRAC	1 cut(s)	105
MseI	TTAA	5 cut(s)	431, 509, 567, 584, 1020
MslI	CAYNNNNRTG	2 cut(s)	189, 318
MspA1I	CMGCKG	1 cut(s)	121
MspI	CCGG	1 cut(s)	781
MspR9I	CCNGG	3 cut(s)	303, 351, 781
MssI	GTTTAAAC	1 cut(s)	510
Mva1269I	GAATGC	1 cut(s)	297
MvaI	CCWGG	2 cut(s)	303, 351
MvnI	CGCG	1 cut(s)	842
MwoI	GCNNNNNNNGC	3 cut(s)	41, 101, 127
NciI	CCSGG	1 cut(s)	781
NdeII	GATC	5 cut(s)	6, 18, 343, 679, 913
NlaIII	CATG	2 cut(s)	593, 718
NlaIV	GGNNCC	1 cut(s)	129
NruI	TCGCGA	1 cut(s)	842
NspV	TTCGAA	1 cut(s)	165
OliI	CACNNNNGTG	1 cut(s)	189
PctI	GAATGC	1 cut(s)	297
PfeI	GAWTC	1 cut(s)	944
PflFI	GACNNNGTC	1 cut(s)	186
PfoI	TCCNGGA	1 cut(s)	349
PkrI	GCNGC	3 cut(s)	268, 809, 1048
PleI	GAGTC	3 cut(s)	43, 109, 1091
PmeI	GTTTAAAC	1 cut(s)	510
PpsI	GAGTC	3 cut(s)	43, 109, 1091
PshBI	ATTAAT	1 cut(s)	1020
Psp6I	CCWGG	2 cut(s)	301, 349
PspGI	CCWGG	2 cut(s)	301, 349
PspN4I	GGNNCC	1 cut(s)	129
PspPI	GGNCC	1 cut(s)	892
PsyI	GACNNNGTC	1 cut(s)	186
PvuII	CAGCTG	1 cut(s)	121
RruI	TCGCGA	1 cut(s)	842
RsaI	GTAC	2 cut(s)	74, 438
RsaNI	GTAC	2 cut(s)	73, 437
RseI	CAYNNNNRTG	2 cut(s)	189, 318
SalI	GTCGAC	1 cut(s)	226
SaqAI	TTAA	5 cut(s)	431, 509, 567, 584, 1020
SatI	GCNGC	3 cut(s)	267, 808, 1047
Sau3AI	GATC	5 cut(s)	6, 18, 343, 679, 913
Sau96I	GGNCC	1 cut(s)	892
SchI	GAGTC	3 cut(s)	43, 109, 1092
ScrFI	CCNGG	3 cut(s)	303, 351, 781
SfaNI	GCATC	2 cut(s)	433, 655
SfcI	CTRYAG	1 cut(s)	918
SfuI	TTCGAA	1 cut(s)	165
SmiMI	CAYNNNNRTG	2 cut(s)	189, 318
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	9 cut(s)	201, 330, 354, 471, 615, 633, 693, 773, 790
SspMI	CTAG	1 cut(s)	144
StyD4I	CCNGG	3 cut(s)	301, 349, 779
TaaI	ACNGT	3 cut(s)	188, 673, 1053
TaqI	TCGA	5 cut(s)	30, 165, 227, 687, 1055
TasI	AATT	9 cut(s)	201, 330, 354, 471, 615, 633, 693, 773, 790
TfiI	GAWTC	1 cut(s)	944
Tru1I	TTAA	5 cut(s)	431, 509, 567, 584, 1020
Tru9I	TTAA	5 cut(s)	431, 509, 567, 584, 1020
TscAI	CASTG	1 cut(s)	678
TseI	GCWGC	3 cut(s)	266, 807, 1046
TspDTI	ATGAA	2 cut(s)	731, 989
TspGWI	ACGGA	1 cut(s)	31
TspRI	CASTG	1 cut(s)	678
Tth111I	GACNNNGTC	1 cut(s)	186
VspI	ATTAAT	1 cut(s)	1020
XagI	CCTNNNNNAGG	1 cut(s)	135
XapI	RAATTY	4 cut(s)	330, 471, 615, 633
XmiI	GTMKAC	2 cut(s)	227, 732
XspI	CTAG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.