Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009876

Physical Location & Seq

Genomic Coordinates Forward (+)

6027487 .. 6029115

Gene Structure 1629 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G17530.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCGATCAATCGTAGCTCCGATCATGAATCCGACGAAAACACCCGTCTTTACCATCCTTACCAGAACTACCAGGTCCCGATCAAATCTCAGTATCTATACAAGCTTCCGACTTCTCCGGAATTTCTATTCACGGAAGAGTCTCTCAAGCAGCGTCGATCATGGGGAGAAAATCTCACTTTCTACACAGGGACGGGTTATCTAGCCGGCTCTGTAGCCGGTGCTTCAGCTGGGATCTTCTCTGGTATCAAGAGTTTCGAAAATGGAGACACGACGAAGCTGAAAATCAACAGGATTTTGAATTCGTCTGGTCAGGCAGGTCGTACTTGGGGTAATAGGGTTGGGATTGTTGGGTTGATCTACGCAGGGATTGAGAGTGGTGTGGTGGCGGTAACTGATAAGGACGATGTTTGGACCAGTGTTGTCGCTGGTCTGGGAACTGGAGCGGTCTTTAGGGCAGCACGAGGAGTGAGATCTGCGGCTGTGGCTGGTGCTTTTGGCGGAATTGCGGCTGGTGCAGTTGTGGCGGGGAAGCAGGTTTTCAAGCGGTATGCTCACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko04212 map04212

Pfam Domains

Protein Families

Tim17

Protein Analysis

187

Amino Acids

19.97

Weight (kDa)

9.58

Isoelectric Point (pI)

28.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	60 - 170	3.6e-26	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17530 AT1G17530 AT1G72750
fragaria_vesca	FvH4_6g34150 FvH4_6g34150 FvH4_6g34150
malus_domestica	MD08G1136500.v1.1 MD17G1172500.v1.1
prunus_persica	Prupe.3G045100_v2.0.a1
pyrus_communis	pycom09g10530 pycom17g17040
rosa_chinensis	RchiOBHm_Chr2g0144461
rosa_laevigata	RLG00000020083
rosa_multiflora	Rmu_sc0005789.1_g000013 Rmu_sc0007240.1_g000003
rosa_rugosa	Rorug02G0386900
rosa_samantha	Rh2AG439100 Rh2BG449400 Rh2CG426200 Rh2DG459200
rosa_wichuraiana	Rw2G035930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	308, 526
AccBSI	CCGCTC	1 cut(s)	446
AccIII	TCCGGA	1 cut(s)	118
AciI	CCGC	7 cut(s)	389, 446, 479, 501, 509, 527, 547
AclWI	GGATC	1 cut(s)	242
AcsI	RAATTY	2 cut(s)	122, 301
AcuI	CTGAAG	1 cut(s)	210
AfaI	GTAC	1 cut(s)	325
AgsI	TTSAA	2 cut(s)	301, 544
AjnI	CCWGG	1 cut(s)	72
AluBI	AGCT	4 cut(s)	18, 106, 230, 280
AluI	AGCT	4 cut(s)	18, 106, 230, 280
Alw26I	GTCTC	2 cut(s)	147, 261
AlwI	GGATC	1 cut(s)	242
Aor13HI	TCCGGA	1 cut(s)	118
ApeKI	GCWGC	2 cut(s)	151, 458
ApoI	RAATTY	2 cut(s)	122, 301
AspS9I	GGNCC	2 cut(s)	76, 414
AsuII	TTCGAA	1 cut(s)	258
AvaII	GGWCC	2 cut(s)	76, 414
BauI	CACGAG	1 cut(s)	462
BbvI	GCAGC	2 cut(s)	163, 470
BccI	CCATC	1 cut(s)	63
BciT130I	CCWGG	1 cut(s)	74
BcoDI	GTCTC	2 cut(s)	147, 261
BfaI	CTAG	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	213
BfuAI	ACCTGC	2 cut(s)	308, 526
BglII	AGATCT	1 cut(s)	473
BisI	GCNGC	4 cut(s)	152, 459, 480, 510
BlsI	GCNGC	4 cut(s)	153, 460, 481, 511
Bme1390I	CCNGG	1 cut(s)	74
Bme18I	GGWCC	2 cut(s)	76, 414
BmgT120I	GGNCC	2 cut(s)	76, 414
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	74
BplI	GAGNNNNNCTC	2 cut(s)	159, 191
BpmI	CTGGAG	1 cut(s)	462
Bpu14I	TTCGAA	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	131
BsaWI	WCCGGW	1 cut(s)	118
Bse118I	RCCGGY	2 cut(s)	206, 218
Bse1I	ACTGG	2 cut(s)	417, 445
BseAI	TCCGGA	1 cut(s)	118
BseBI	CCWGG	1 cut(s)	74
BseGI	GGATG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	2 cut(s)	417, 445
BseRI	GAGGAG	1 cut(s)	480
BseXI	GCAGC	2 cut(s)	163, 470
BseYI	CCCAGC	1 cut(s)	230
BsgI	GTGCAG	1 cut(s)	537
BsiSI	CCGG	3 cut(s)	119, 207, 219
BslFI	GGGAC	2 cut(s)	62, 205
BsmAI	GTCTC	2 cut(s)	147, 261
BsmFI	GGGAC	2 cut(s)	62, 205
Bsp119I	TTCGAA	1 cut(s)	258
Bsp13I	TCCGGA	1 cut(s)	118
Bsp143I	GATC	7 cut(s)	6, 22, 81, 158, 234, 357, 473
BspACI	CCGC	7 cut(s)	389, 446, 479, 501, 509, 527, 547
BspCNI	CTCAG	1 cut(s)	103
BspEI	TCCGGA	1 cut(s)	118
BspHI	TCATGA	1 cut(s)	25
BspLI	GGNNCC	1 cut(s)	78
BspMI	ACCTGC	2 cut(s)	308, 526
BspPI	GGATC	1 cut(s)	242
BspT104I	TTCGAA	1 cut(s)	258
BsrBI	CCGCTC	1 cut(s)	446
BsrFI	RCCGGY	2 cut(s)	206, 218
BsrI	ACTGG	2 cut(s)	417, 445
BssAI	RCCGGY	2 cut(s)	206, 218
BssMI	GATC	7 cut(s)	6, 22, 81, 158, 234, 357, 473
BssSI	CACGAG	1 cut(s)	462
Bst2BI	CACGAG	1 cut(s)	462
Bst2UI	CCWGG	1 cut(s)	74
Bst6I	CTCTTC	1 cut(s)	132
BstBI	TTCGAA	1 cut(s)	258
BstC8I	GCNNGC	1 cut(s)	208
BstDEI	CTNAG	1 cut(s)	90
BstF5I	GGATG	1 cut(s)	55
BstKTI	GATC	7 cut(s)	9, 25, 84, 161, 237, 360, 476
BstMAI	GTCTC	2 cut(s)	147, 261
BstMBI	GATC	7 cut(s)	6, 22, 81, 158, 234, 357, 473
BstMWI	GCNNNNNNNGC	3 cut(s)	485, 515, 524
BstNI	CCWGG	1 cut(s)	74
BstSCI	CCNGG	1 cut(s)	72
BstSFI	CTRYAG	1 cut(s)	213
BstV1I	GCAGC	2 cut(s)	163, 470
BstX2I	RGATCY	2 cut(s)	234, 473
BstYI	RGATCY	2 cut(s)	234, 473
BtsCI	GGATG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	424
BveI	ACCTGC	2 cut(s)	308, 526
Cac8I	GCNNGC	1 cut(s)	208
CciI	TCATGA	1 cut(s)	25
Cfr10I	RCCGGY	2 cut(s)	206, 218
Cfr13I	GGNCC	2 cut(s)	76, 414
CseI	GACGC	1 cut(s)	143
CsiI	ACCWGGT	1 cut(s)	72
Csp6I	GTAC	1 cut(s)	324
CviAII	CATG	2 cut(s)	26, 162
CviQI	GTAC	1 cut(s)	324
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	7 cut(s)	8, 24, 83, 160, 236, 359, 475
DpnII	GATC	7 cut(s)	6, 22, 81, 158, 234, 357, 473
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
EciI	GGCGGA	1 cut(s)	516
Eco47I	GGWCC	2 cut(s)	76, 414
Eco57I	CTGAAG	1 cut(s)	210
EcoO109I	RGGNCCY	1 cut(s)	76
EcoRI	GAATTC	1 cut(s)	301
EcoRII	CCWGG	1 cut(s)	72
FaeI	CATG	2 cut(s)	29, 165
FaiI	YATR	6 cut(s)	27, 100, 163, 552, 560, 562
FaqI	GGGAC	2 cut(s)	62, 205
FatI	CATG	2 cut(s)	25, 161
FauI	CCCGC	1 cut(s)	520
FauNDI	CATATG	1 cut(s)	560
Fnu4HI	GCNGC	4 cut(s)	152, 459, 480, 510
FokI	GGATG	1 cut(s)	42
Fsp4HI	GCNGC	4 cut(s)	152, 459, 480, 510
FspBI	CTAG	1 cut(s)	203
GluI	GCNGC	4 cut(s)	152, 459, 480, 510
GsaI	CCCAGC	1 cut(s)	234
GsuI	CTGGAG	1 cut(s)	462
HapII	CCGG	3 cut(s)	119, 207, 219
HgaI	GACGC	1 cut(s)	143
Hin1II	CATG	2 cut(s)	29, 165
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	2 cut(s)	29, 140
HpaII	CCGG	3 cut(s)	119, 207, 219
Hpy188I	TCNGA	3 cut(s)	22, 34, 111
Hpy188III	TCNNGA	4 cut(s)	26, 79, 119, 250
Hpy99I	CGWCG	3 cut(s)	38, 159, 277
HpyCH4V	TGCA	1 cut(s)	518
HpyF10VI	GCNNNNNNNGC	3 cut(s)	485, 515, 524
HpyF3I	CTNAG	1 cut(s)	90
Hsp92II	CATG	2 cut(s)	29, 165
Kpn2I	TCCGGA	1 cut(s)	118
KroI	GCCGGC	1 cut(s)	206
KroNI	GCCGGC	1 cut(s)	208
Kzo9I	GATC	7 cut(s)	6, 22, 81, 158, 234, 357, 473
LmnI	GCTCC	2 cut(s)	23, 443
Lsp1109I	GCAGC	2 cut(s)	163, 470
MabI	ACCWGGT	1 cut(s)	72
MaeI	CTAG	1 cut(s)	203
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	7 cut(s)	8, 24, 83, 160, 236, 359, 475
MbiI	CCGCTC	1 cut(s)	446
MboI	GATC	7 cut(s)	6, 22, 81, 158, 234, 357, 473
MboII	GAAGA	2 cut(s)	149, 229
MflI	RGATCY	2 cut(s)	234, 473
MluCI	AATT	3 cut(s)	122, 301, 504
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	2 cut(s)	57, 134
MnlI	CCTC	1 cut(s)	458
MroI	TCCGGA	1 cut(s)	118
MroNI	GCCGGC	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	3 cut(s)	119, 207, 219
MspR9I	CCNGG	1 cut(s)	74
MvaI	CCWGG	1 cut(s)	74
MwoI	GCNNNNNNNGC	3 cut(s)	485, 515, 524
NaeI	GCCGGC	1 cut(s)	208
NdeI	CATATG	1 cut(s)	560
NdeII	GATC	7 cut(s)	6, 22, 81, 158, 234, 357, 473
NgoMIV	GCCGGC	1 cut(s)	206
NlaIII	CATG	2 cut(s)	29, 165
NlaIV	GGNNCC	1 cut(s)	78
NspV	TTCGAA	1 cut(s)	258
PagI	TCATGA	1 cut(s)	25
PdiI	GCCGGC	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	29
PkrI	GCNGC	4 cut(s)	153, 460, 481, 511
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
PpuMI	RGGWCCY	1 cut(s)	76
Psp5II	RGGWCCY	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	72
PspFI	CCCAGC	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	72
PspN4I	GGNNCC	1 cut(s)	78
PspPI	GGNCC	2 cut(s)	76, 414
PspPPI	RGGWCCY	1 cut(s)	76
PsuI	RGATCY	2 cut(s)	234, 473
PvuII	CAGCTG	1 cut(s)	230
RsaI	GTAC	1 cut(s)	325
RsaNI	GTAC	1 cut(s)	324
SatI	GCNGC	4 cut(s)	152, 459, 480, 510
Sau3AI	GATC	7 cut(s)	6, 22, 81, 158, 234, 357, 473
Sau96I	GGNCC	2 cut(s)	76, 414
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	1 cut(s)	74
SetI	ASST	7 cut(s)	20, 78, 108, 232, 282, 322, 540
SexAI	ACCWGGT	1 cut(s)	72
SfcI	CTRYAG	1 cut(s)	213
SfuI	TTCGAA	1 cut(s)	258
SinI	GGWCC	2 cut(s)	76, 414
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	3 cut(s)	122, 301, 504
SsiI	CCGC	7 cut(s)	389, 446, 479, 501, 509, 527, 547
SspMI	CTAG	1 cut(s)	203
StyD4I	CCNGG	1 cut(s)	72
TaqI	TCGA	2 cut(s)	157, 258
TasI	AATT	3 cut(s)	122, 301, 504
TauI	GCSGC	2 cut(s)	482, 512
TfiI	GAWTC	1 cut(s)	29
TscAI	CASTG	1 cut(s)	424
TseI	GCWGC	2 cut(s)	151, 458
TspDTI	ATGAA	1 cut(s)	42
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	1 cut(s)	424
VpaK11BI	GGWCC	2 cut(s)	76, 414
XapI	RAATTY	2 cut(s)	122, 301
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.