Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009876

Physical Location & Seq

Genomic Coordinates Reverse (-)

63446448 .. 63449291

Gene Structure 2844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG449400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGTCTCAACCCATGTCCTCCGATCACGACCACAACAACTCCGACCCGGTCCCGACCCGCCTCTACAACCCCTACCAAGATCTCCAGGTCCCAATTCAAAACCTTTACCAGCTCCCCACCTCCCCGGAGTTCCTCTTCGTCGAGGAGGCCCGCCGCCAGCGCCGCTCCTGGGGCGAGAATCTCACCTTCTACACCGGCTGCACCTACCTCGCCGGCGCCGTTGCCGGCGGATCCGTCGGCCTCATCTCCGGCGTCCGATCGTTCGAATCCGGCGACACCACCAAGCTCAGGATCAACCGGGTCCTCAACTCGTCGGGTCACACGGGTCGGGTCTGGGCCAACCGGCTCGGCGTGATCGGGTTGCTCTATGCGGGTATGGAGAGCGGGGTTCAGGCGCTGAGGGATACGGATGATGTGTGGAATAGCGTTGCCGCGGGGCTCGGTACCGGAGCGGTGTACCGTGCGGCGAGGGGAGTGAGGTCGGCGGCGGTGGCCGGCGCCGTTGGAGGAGTGCTTGTGGGAGTGGCAGTTGCGGCAAAGCAGGGGCTGAAGCGATACGTGCCGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko04212 map04212

Pfam Domains

Protein Families

Tim17

Protein Analysis

189

Amino Acids

20.18

Weight (kDa)

9.41

Isoelectric Point (pI)

48.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	62 - 172	7.1e-30	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17530 AT1G17530 AT1G72750
fragaria_vesca	FvH4_6g34150 FvH4_6g34150 FvH4_6g34150
malus_domestica	MD08G1136500.v1.1 MD17G1172500.v1.1
prunus_persica	Prupe.3G045100_v2.0.a1
pyrus_communis	pycom09g10530 pycom17g17040
rosa_chinensis	RchiOBHm_Chr2g0144461
rosa_laevigata	RLG00000020083
rosa_multiflora	Rmu_sc0005789.1_g000013 Rmu_sc0007240.1_g000003
rosa_rugosa	Rorug02G0386900
rosa_samantha	Rh2AG439100 Rh2BG449400 Rh2CG426200 Rh2DG459200
rosa_wichuraiana	Rw2G035930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	443
AccB1I	GGYRCC	3 cut(s)	215, 443, 497
AccBSI	CCGCTC	3 cut(s)	165, 384, 452
AccII	CGCG	1 cut(s)	434
AclWI	GGATC	3 cut(s)	225, 238, 299
AcoI	YGGCCR	1 cut(s)	492
AcuI	CTGAAG	1 cut(s)	569
AcyI	GRCGYC	3 cut(s)	216, 252, 498
AfaI	GTAC	2 cut(s)	445, 458
AfiI	CCNNNNNNNGG	2 cut(s)	169, 288
AgsI	TTSAA	1 cut(s)	98
AjnI	CCWGG	2 cut(s)	84, 167
AluBI	AGCT	2 cut(s)	112, 286
AluI	AGCT	2 cut(s)	112, 286
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	3 cut(s)	225, 238, 299
AlwNI	CAGNNNCTG	2 cut(s)	397, 547
AoxI	GGCC	4 cut(s)	147, 238, 336, 492
ApeKI	GCWGC	1 cut(s)	198
Asp718I	GGTACC	1 cut(s)	443
AspLEI	GCGC	4 cut(s)	162, 218, 397, 500
AspS9I	GGNCC	5 cut(s)	49, 88, 148, 301, 336
AsuC2I	CCSGG	3 cut(s)	47, 125, 299
AsuHPI	GGTGA	1 cut(s)	175
AsuII	TTCGAA	1 cut(s)	264
AvaII	GGWCC	3 cut(s)	49, 88, 301
BamHI	GGATCC	1 cut(s)	230
BanI	GGYRCC	3 cut(s)	215, 443, 497
BanII	GRGCYC	1 cut(s)	441
BbvCI	CCTCAGC	1 cut(s)	398
BbvI	GCAGC	1 cut(s)	185
BceAI	ACGGC	2 cut(s)	203, 485
BcgI	CGANNNNNNTGC	2 cut(s)	190, 224
BciT130I	CCWGG	2 cut(s)	86, 169
BciVI	GTATCC	1 cut(s)	397
BcnI	CCSGG	3 cut(s)	47, 125, 299
BcoDI	GTCTC	1 cut(s)	9
BfoI	RGCGCY	4 cut(s)	163, 219, 398, 501
BfuI	GTATCC	1 cut(s)	397
BglII	AGATCT	1 cut(s)	79
BisI	GCNGC	7 cut(s)	154, 163, 199, 432, 465, 486, 534
BlsI	GCNGC	7 cut(s)	155, 164, 200, 433, 466, 487, 535
Bme1390I	CCNGG	5 cut(s)	47, 86, 125, 169, 299
Bme18I	GGWCC	3 cut(s)	49, 88, 301
BmgT120I	GGNCC	5 cut(s)	49, 88, 148, 301, 336
BmiI	GGNNCC	7 cut(s)	51, 90, 217, 232, 302, 445, 499
BmrFI	CCNGG	5 cut(s)	47, 86, 125, 169, 299
BpmI	CTGGAG	1 cut(s)	68
Bpu10I	CCTNAGC	2 cut(s)	287, 398
Bpu14I	TTCGAA	1 cut(s)	264
BpuMI	CCSGG	3 cut(s)	47, 125, 299
BsaAI	YACGTR	1 cut(s)	559
BsaHI	GRCGYC	3 cut(s)	216, 252, 498
BsaJI	CCNNGG	3 cut(s)	123, 168, 432
BsaWI	WCCGGW	1 cut(s)	446
BsaXI	ACNNNNNCTCC	6 cut(s)	23, 53, 501, 513, 531, 543
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 288
Bse118I	RCCGGY	5 cut(s)	194, 212, 224, 342, 494
BseBI	CCWGG	2 cut(s)	86, 169
BseDI	CCNNGG	3 cut(s)	123, 168, 432
BseGI	GGATG	1 cut(s)	415
BseLI	CCNNNNNNNGG	2 cut(s)	169, 288
BseMII	CTCAG	2 cut(s)	301, 389
BseRI	GAGGAG	2 cut(s)	158, 522
BseXI	GCAGC	1 cut(s)	185
BsgI	GTGCAG	1 cut(s)	184
Bsh1236I	CGCG	1 cut(s)	434
Bsh1285I	CGRYCG	1 cut(s)	260
BshFI	GGCC	4 cut(s)	149, 240, 338, 494
BshNI	GGYRCC	3 cut(s)	215, 443, 497
BsiEI	CGRYCG	1 cut(s)	260
BslFI	GGGAC	2 cut(s)	35, 74
BslI	CCNNNNNNNGG	2 cut(s)	169, 288
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	2 cut(s)	35, 74
BsnI	GGCC	4 cut(s)	149, 240, 338, 494
Bsp119I	TTCGAA	1 cut(s)	264
Bsp1286I	GDGCHC	1 cut(s)	441
Bsp143I	GATC	6 cut(s)	22, 79, 230, 257, 291, 354
BspANI	GGCC	4 cut(s)	149, 240, 338, 494
BspCNI	CTCAG	2 cut(s)	300, 390
BspFNI	CGCG	1 cut(s)	434
BspLI	GGNNCC	7 cut(s)	51, 90, 217, 232, 302, 445, 499
BspPI	GGATC	3 cut(s)	225, 238, 299
BspT104I	TTCGAA	1 cut(s)	264
BspT107I	GGYRCC	3 cut(s)	215, 443, 497
BsrBI	CCGCTC	3 cut(s)	165, 384, 452
BsrFI	RCCGGY	5 cut(s)	194, 212, 224, 342, 494
BssAI	RCCGGY	5 cut(s)	194, 212, 224, 342, 494
BssECI	CCNNGG	3 cut(s)	123, 168, 432
BssMI	GATC	6 cut(s)	22, 79, 230, 257, 291, 354
BssNI	GRCGYC	3 cut(s)	216, 252, 498
Bst2UI	CCWGG	2 cut(s)	86, 169
Bst4CI	ACNGT	1 cut(s)	461
Bst6I	CTCTTC	1 cut(s)	140
BstACI	GRCGYC	3 cut(s)	216, 252, 498
BstBAI	YACGTR	1 cut(s)	559
BstBI	TTCGAA	1 cut(s)	264
BstC8I	GCNNGC	5 cut(s)	151, 158, 214, 226, 496
BstDEI	CTNAG	2 cut(s)	287, 398
BstDSI	CCRYGG	1 cut(s)	432
BstF5I	GGATG	1 cut(s)	415
BstFNI	CGCG	1 cut(s)	434
BstH2I	RGCGCY	4 cut(s)	163, 219, 398, 501
BstHHI	GCGC	4 cut(s)	162, 218, 397, 500
BstKTI	GATC	6 cut(s)	25, 82, 233, 260, 294, 357
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	6 cut(s)	22, 79, 230, 257, 291, 354
BstMCI	CGRYCG	1 cut(s)	260
BstMWI	GCNNNNNNNGC	6 cut(s)	159, 162, 171, 491, 533, 559
BstNI	CCWGG	2 cut(s)	86, 169
BstSCI	CCNGG	5 cut(s)	45, 84, 123, 167, 297
BstUI	CGCG	1 cut(s)	434
BstV1I	GCAGC	1 cut(s)	185
BstX2I	RGATCY	2 cut(s)	79, 230
BstYI	RGATCY	2 cut(s)	79, 230
BsuI	GTATCC	1 cut(s)	397
BsuRI	GGCC	4 cut(s)	149, 240, 338, 494
BtgI	CCRYGG	1 cut(s)	432
BtsCI	GGATG	1 cut(s)	415
Cac8I	GCNNGC	5 cut(s)	151, 158, 214, 226, 496
CaiI	CAGNNNCTG	2 cut(s)	397, 547
CfoI	GCGC	4 cut(s)	162, 218, 397, 500
Cfr10I	RCCGGY	5 cut(s)	194, 212, 224, 342, 494
Cfr13I	GGNCC	5 cut(s)	49, 88, 148, 301, 336
Cfr42I	CCGCGG	1 cut(s)	435
CseI	GACGC	1 cut(s)	241
Csp6I	GTAC	2 cut(s)	444, 457
CviAII	CATG	1 cut(s)	13
CviQI	GTAC	2 cut(s)	444, 457
DdeI	CTNAG	2 cut(s)	287, 398
DinI	GGCGCC	2 cut(s)	217, 499
DpnI	GATC	6 cut(s)	24, 81, 232, 259, 293, 356
DpnII	GATC	6 cut(s)	22, 79, 230, 257, 291, 354
EaeI	YGGCCR	1 cut(s)	492
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
EciI	GGCGGA	1 cut(s)	243
Eco24I	GRGCYC	1 cut(s)	441
Eco47I	GGWCC	3 cut(s)	49, 88, 301
Eco57I	CTGAAG	1 cut(s)	569
EcoO109I	RGGNCCY	2 cut(s)	88, 301
EcoRII	CCWGG	2 cut(s)	84, 167
EcoT38I	GRGCYC	1 cut(s)	441
EgeI	GGCGCC	2 cut(s)	217, 499
EheI	GGCGCC	2 cut(s)	217, 499
FaeI	CATG	1 cut(s)	16
FaiI	YATR	4 cut(s)	14, 369, 377, 568
FaqI	GGGAC	2 cut(s)	35, 74
FatI	CATG	1 cut(s)	12
FauI	CCCGC	5 cut(s)	65, 158, 364, 377, 427
Fnu4HI	GCNGC	7 cut(s)	154, 163, 199, 432, 465, 486, 534
FokI	GGATG	1 cut(s)	422
FriOI	GRGCYC	1 cut(s)	441
Fsp4HI	GCNGC	7 cut(s)	154, 163, 199, 432, 465, 486, 534
GlaI	GCGC	4 cut(s)	161, 217, 396, 499
GluI	GCNGC	7 cut(s)	154, 163, 199, 432, 465, 486, 534
GsuI	CTGGAG	1 cut(s)	68
HaeII	RGCGCY	4 cut(s)	163, 219, 398, 501
HaeIII	GGCC	4 cut(s)	149, 240, 338, 494
HgaI	GACGC	1 cut(s)	241
HhaI	GCGC	4 cut(s)	162, 218, 397, 500
Hin1I	GRCGYC	3 cut(s)	216, 252, 498
Hin1II	CATG	1 cut(s)	16
Hin6I	GCGC	4 cut(s)	160, 216, 395, 498
HinP1I	GCGC	4 cut(s)	160, 216, 395, 498
HinfI	GANTC	2 cut(s)	178, 266
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	3 cut(s)	22, 43, 257
Hpy188III	TCNNGA	3 cut(s)	26, 52, 289
Hpy8I	GTNNAC	1 cut(s)	457
Hpy99I	CGWCG	3 cut(s)	143, 239, 316
HpyAV	CCTTC	1 cut(s)	196
HpyCH4III	ACNGT	1 cut(s)	461
HpyCH4IV	ACGT	1 cut(s)	558
HpyCH4V	TGCA	1 cut(s)	201
HpyF10VI	GCNNNNNNNGC	6 cut(s)	159, 162, 171, 491, 533, 559
HpyF3I	CTNAG	2 cut(s)	287, 398
HpySE526I	ACGT	1 cut(s)	558
Hsp92I	GRCGYC	3 cut(s)	216, 252, 498
Hsp92II	CATG	1 cut(s)	16
HspAI	GCGC	4 cut(s)	160, 216, 395, 498
KasI	GGCGCC	2 cut(s)	215, 497
KpnI	GGTACC	1 cut(s)	447
KroI	GCCGGC	3 cut(s)	212, 224, 494
KroNI	GCCGGC	3 cut(s)	214, 226, 496
KspI	CCGCGG	1 cut(s)	435
Kzo9I	GATC	6 cut(s)	22, 79, 230, 257, 291, 354
LmnI	GCTCC	3 cut(s)	117, 170, 449
Lsp1109I	GCAGC	1 cut(s)	185
MaeII	ACGT	1 cut(s)	558
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	6 cut(s)	24, 81, 232, 259, 293, 356
MbiI	CCGCTC	3 cut(s)	165, 384, 452
MboI	GATC	6 cut(s)	22, 79, 230, 257, 291, 354
MboII	GAAGA	1 cut(s)	127
MflI	RGATCY	2 cut(s)	79, 230
MhlI	GDGCHC	1 cut(s)	441
MluCI	AATT	1 cut(s)	93
Mly113I	GGCGCC	2 cut(s)	216, 498
MmeI	TCCRAC	2 cut(s)	66, 484
MreI	CGCCGGCG	1 cut(s)	212
MroNI	GCCGGC	3 cut(s)	212, 224, 494
MspA1I	CMGCKG	1 cut(s)	434
MspR9I	CCNGG	5 cut(s)	47, 86, 125, 169, 299
MvaI	CCWGG	2 cut(s)	86, 169
MvnI	CGCG	1 cut(s)	434
MwoI	GCNNNNNNNGC	6 cut(s)	159, 162, 171, 491, 533, 559
NaeI	GCCGGC	3 cut(s)	214, 226, 496
NarI	GGCGCC	2 cut(s)	216, 498
NciI	CCSGG	3 cut(s)	47, 125, 299
NdeII	GATC	6 cut(s)	22, 79, 230, 257, 291, 354
NgoMIV	GCCGGC	3 cut(s)	212, 224, 494
NlaIII	CATG	1 cut(s)	16
NlaIV	GGNNCC	7 cut(s)	51, 90, 217, 232, 302, 445, 499
NmeAIII	GCCGAG	1 cut(s)	327
NmuCI	GTSAC	1 cut(s)	317
NspV	TTCGAA	1 cut(s)	264
PcsI	WCGNNNNNNNCGW	2 cut(s)	216, 270
PdiI	GCCGGC	3 cut(s)	214, 226, 496
PfeI	GAWTC	2 cut(s)	178, 266
PflFI	GACNNNGTC	1 cut(s)	47
PkrI	GCNGC	7 cut(s)	155, 164, 200, 433, 466, 487, 535
Ple19I	CGATCG	1 cut(s)	260
PluTI	GGCGCC	2 cut(s)	219, 501
Ppu21I	YACGTR	1 cut(s)	559
PpuMI	RGGWCCY	2 cut(s)	88, 301
Psp5II	RGGWCCY	2 cut(s)	88, 301
Psp6I	CCWGG	2 cut(s)	84, 167
PspGI	CCWGG	2 cut(s)	84, 167
PspN4I	GGNNCC	7 cut(s)	51, 90, 217, 232, 302, 445, 499
PspPI	GGNCC	5 cut(s)	49, 88, 148, 301, 336
PspPPI	RGGWCCY	2 cut(s)	88, 301
PstNI	CAGNNNCTG	2 cut(s)	397, 547
PsuI	RGATCY	2 cut(s)	79, 230
PsyI	GACNNNGTC	1 cut(s)	47
PvuI	CGATCG	1 cut(s)	260
RsaI	GTAC	2 cut(s)	445, 458
RsaNI	GTAC	2 cut(s)	444, 457
SacII	CCGCGG	1 cut(s)	435
SatI	GCNGC	7 cut(s)	154, 163, 199, 432, 465, 486, 534
Sau3AI	GATC	6 cut(s)	22, 79, 230, 257, 291, 354
Sau96I	GGNCC	5 cut(s)	49, 88, 148, 301, 336
ScrFI	CCNGG	5 cut(s)	47, 86, 125, 169, 299
SduI	GDGCHC	1 cut(s)	441
SfoI	GGCGCC	2 cut(s)	217, 499
Sfr303I	CCGCGG	1 cut(s)	435
SfuI	TTCGAA	1 cut(s)	264
SgrAI	CRCCGGYG	1 cut(s)	212
SgrBI	CCGCGG	1 cut(s)	435
SinI	GGWCC	3 cut(s)	49, 88, 301
Sse9I	AATT	1 cut(s)	93
SspDI	GGCGCC	2 cut(s)	215, 497
StyD4I	CCNGG	5 cut(s)	45, 84, 123, 167, 297
TaaI	ACNGT	1 cut(s)	461
TaiI	ACGT	1 cut(s)	561
TaqI	TCGA	2 cut(s)	141, 264
TasI	AATT	1 cut(s)	93
TauI	GCSGC	6 cut(s)	156, 165, 434, 467, 488, 536
TfiI	GAWTC	2 cut(s)	178, 266
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	1 cut(s)	198
Tsp45I	GTSAC	1 cut(s)	317
TspGWI	ACGGA	2 cut(s)	223, 422
Tth111I	GACNNNGTC	1 cut(s)	47
VpaK11BI	GGWCC	3 cut(s)	49, 88, 301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.