Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009876

Physical Location & Seq

Genomic Coordinates Reverse (-)

26965237 .. 26967477

Gene Structure 2241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g34150.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGTCTCAGCCCATGTCCTCGGATCACGACCACCACGACTCCGACCCGGTCCCGACCCGACTCTACAACCCCTACCAGGATCTCCAGGTCCCAATTGAGAATCTCTACAAGCTCCCAACCTCGCCGGAGTTCCTCTTCGTCGAGGAGGCCCGCCGCCAGCGCCGCTCCTGGGGCGAGAATCTCACCTTCTACACCGGCTGCACCTACCTCGCCGGCGCCATCTCCGGCGGATCCGTCGGCCTCGTCTCCGGCGTCCGCTCCTTCGAGGCCGGCGACACCACCAAGCTCCGGATCAACCGGATCCTCAACTCCTCGGGTCACACCGGCCGGGTCTGGGCCAACCGCCTCGGCGTGATCGGGTTGCTCTACGCCGGTATGGAGAGCGGCGTTCAGGCGCTGAGGGATACCGATGATGTGTGGAACGGCGTCGCGGCGGGGCTCGGCACCGGCGCTGTGTACCGTGCGGCGAGGGGAGTGAGGTCGGCGGCGGTGGCCGGCGCGGTTGGAGGAGCTCTAGCTGGATTGGCGGTTGGGGCGAAGCAGGCGTTGAAGCGATACGTTCCGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko04212 map04212

Pfam Domains

Protein Families

Tim17

Protein Analysis

190

Amino Acids

20.15

Weight (kDa)

9.13

Isoelectric Point (pI)

48.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	62 - 173	8.4e-29	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17530 AT1G17530 AT1G72750
fragaria_vesca	FvH4_6g34150 FvH4_6g34150 FvH4_6g34150
malus_domestica	MD08G1136500.v1.1 MD17G1172500.v1.1
prunus_persica	Prupe.3G045100_v2.0.a1
pyrus_communis	pycom09g10530 pycom17g17040
rosa_chinensis	RchiOBHm_Chr2g0144461
rosa_laevigata	RLG00000020083
rosa_multiflora	Rmu_sc0005789.1_g000013 Rmu_sc0007240.1_g000003
rosa_rugosa	Rorug02G0386900
rosa_samantha	Rh2AG439100 Rh2BG449400 Rh2CG426200 Rh2DG459200
rosa_wichuraiana	Rw2G035930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	215, 443
AccBSI	CCGCTC	3 cut(s)	165, 258, 384
AccII	CGCG	2 cut(s)	431, 500
AccIII	TCCGGA	1 cut(s)	288
AclWI	GGATC	7 cut(s)	30, 87, 225, 238, 295, 299, 308
AcoI	YGGCCR	2 cut(s)	325, 492
AcyI	GRCGYC	3 cut(s)	216, 252, 426
AfaI	GTAC	1 cut(s)	458
AfiI	CCNNNNNNNGG	4 cut(s)	76, 169, 288, 334
AgsI	TTSAA	1 cut(s)	550
AjnI	CCWGG	3 cut(s)	75, 84, 167
AluBI	AGCT	4 cut(s)	112, 286, 512, 518
AluI	AGCT	4 cut(s)	112, 286, 512, 518
Alw21I	GWGCWC	1 cut(s)	514
Alw26I	GTCTC	2 cut(s)	9, 250
AlwI	GGATC	7 cut(s)	30, 87, 225, 238, 295, 299, 308
AlwNI	CAGNNNCTG	1 cut(s)	397
Ama87I	CYCGRG	1 cut(s)	313
Aor13HI	TCCGGA	1 cut(s)	288
AoxI	GGCC	6 cut(s)	147, 238, 267, 325, 336, 492
ApeKI	GCWGC	1 cut(s)	198
AspLEI	GCGC	5 cut(s)	162, 218, 397, 452, 500
AspS9I	GGNCC	4 cut(s)	49, 88, 148, 336
AsuC2I	CCSGG	2 cut(s)	47, 329
AsuHPI	GGTGA	1 cut(s)	175
AvaI	CYCGRG	1 cut(s)	313
AvaII	GGWCC	2 cut(s)	49, 88
BamHI	GGATCC	2 cut(s)	230, 300
BanI	GGYRCC	2 cut(s)	215, 443
BanII	GRGCYC	2 cut(s)	441, 514
Bbv12I	GWGCWC	1 cut(s)	514
BbvCI	CCTCAGC	1 cut(s)	398
BbvI	GCAGC	1 cut(s)	185
BccI	CCATC	1 cut(s)	227
BceAI	ACGGC	1 cut(s)	439
BcgI	CGANNNNNNTGC	2 cut(s)	190, 224
BciT130I	CCWGG	3 cut(s)	77, 86, 169
BciVI	GTATCC	1 cut(s)	397
BcnI	CCSGG	2 cut(s)	47, 329
BcoDI	GTCTC	2 cut(s)	9, 250
BfaI	CTAG	1 cut(s)	515
BfoI	RGCGCY	4 cut(s)	163, 219, 398, 453
BfuI	GTATCC	1 cut(s)	397
BisI	GCNGC	7 cut(s)	154, 163, 199, 385, 432, 465, 486
BlsI	GCNGC	7 cut(s)	155, 164, 200, 386, 433, 466, 487
Bme1390I	CCNGG	5 cut(s)	47, 77, 86, 169, 329
Bme18I	GGWCC	2 cut(s)	49, 88
BmeT110I	CYCGRG	1 cut(s)	313
BmgT120I	GGNCC	4 cut(s)	49, 88, 148, 336
BmiI	GGNNCC	6 cut(s)	51, 90, 217, 232, 302, 445
BmrFI	CCNGG	5 cut(s)	47, 77, 86, 169, 329
BpmI	CTGGAG	1 cut(s)	68
Bpu10I	CCTNAGC	1 cut(s)	398
BpuMI	CCSGG	2 cut(s)	47, 329
BsaHI	GRCGYC	3 cut(s)	216, 252, 426
BsaJI	CCNNGG	4 cut(s)	18, 168, 312, 346
BsaWI	WCCGGW	2 cut(s)	288, 297
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bsc4I	CCNNNNNNNGG	4 cut(s)	76, 169, 288, 334
Bse118I	RCCGGY	7 cut(s)	194, 212, 269, 323, 371, 446, 494
BseAI	TCCGGA	1 cut(s)	288
BseBI	CCWGG	3 cut(s)	77, 86, 169
BseDI	CCNNGG	4 cut(s)	18, 168, 312, 346
BseLI	CCNNNNNNNGG	4 cut(s)	76, 169, 288, 334
BseMII	CTCAG	2 cut(s)	20, 389
BseRI	GAGGAG	3 cut(s)	158, 301, 522
BseX3I	CGGCCG	1 cut(s)	325
BseXI	GCAGC	1 cut(s)	185
BsgI	GTGCAG	1 cut(s)	184
Bsh1236I	CGCG	2 cut(s)	431, 500
Bsh1285I	CGRYCG	1 cut(s)	328
BshFI	GGCC	6 cut(s)	149, 240, 269, 327, 338, 494
BshNI	GGYRCC	2 cut(s)	215, 443
BsiEI	CGRYCG	1 cut(s)	328
BsiHKAI	GWGCWC	1 cut(s)	514
BsiHKCI	CYCGRG	1 cut(s)	313
BslFI	GGGAC	2 cut(s)	35, 74
BslI	CCNNNNNNNGG	4 cut(s)	76, 169, 288, 334
BsmAI	GTCTC	2 cut(s)	9, 250
BsmBI	CGTCTC	1 cut(s)	250
BsmFI	GGGAC	2 cut(s)	35, 74
BsnI	GGCC	6 cut(s)	149, 240, 269, 327, 338, 494
BsoBI	CYCGRG	1 cut(s)	313
Bsp1286I	GDGCHC	2 cut(s)	441, 514
Bsp13I	TCCGGA	1 cut(s)	288
Bsp143I	GATC	6 cut(s)	22, 79, 230, 291, 300, 354
BspANI	GGCC	6 cut(s)	149, 240, 269, 327, 338, 494
BspCNI	CTCAG	2 cut(s)	19, 390
BspEI	TCCGGA	1 cut(s)	288
BspFNI	CGCG	2 cut(s)	431, 500
BspLI	GGNNCC	6 cut(s)	51, 90, 217, 232, 302, 445
BspPI	GGATC	7 cut(s)	30, 87, 225, 238, 295, 299, 308
BspT107I	GGYRCC	2 cut(s)	215, 443
BsrBI	CCGCTC	3 cut(s)	165, 258, 384
BsrFI	RCCGGY	7 cut(s)	194, 212, 269, 323, 371, 446, 494
BssAI	RCCGGY	7 cut(s)	194, 212, 269, 323, 371, 446, 494
BssECI	CCNNGG	4 cut(s)	18, 168, 312, 346
BssMI	GATC	6 cut(s)	22, 79, 230, 291, 300, 354
BssNI	GRCGYC	3 cut(s)	216, 252, 426
Bst2UI	CCWGG	3 cut(s)	77, 86, 169
Bst4CI	ACNGT	1 cut(s)	461
Bst6I	CTCTTC	1 cut(s)	140
BstACI	GRCGYC	3 cut(s)	216, 252, 426
BstC8I	GCNNGC	6 cut(s)	151, 158, 214, 271, 496, 543
BstDEI	CTNAG	2 cut(s)	6, 398
BstFNI	CGCG	2 cut(s)	431, 500
BstH2I	RGCGCY	4 cut(s)	163, 219, 398, 453
BstHHI	GCGC	5 cut(s)	162, 218, 397, 452, 500
BstKTI	GATC	6 cut(s)	25, 82, 233, 294, 303, 357
BstMAI	GTCTC	2 cut(s)	9, 250
BstMBI	GATC	6 cut(s)	22, 79, 230, 291, 300, 354
BstMCI	CGRYCG	1 cut(s)	328
BstMWI	GCNNNNNNNGC	7 cut(s)	159, 162, 171, 491, 524, 533, 542
BstNI	CCWGG	3 cut(s)	77, 86, 169
BstSCI	CCNGG	5 cut(s)	45, 75, 84, 167, 327
BstUI	CGCG	2 cut(s)	431, 500
BstV1I	GCAGC	1 cut(s)	185
BstX2I	RGATCY	3 cut(s)	79, 230, 300
BstYI	RGATCY	3 cut(s)	79, 230, 300
BstZI	CGGCCG	1 cut(s)	325
BsuI	GTATCC	1 cut(s)	397
BsuRI	GGCC	6 cut(s)	149, 240, 269, 327, 338, 494
Cac8I	GCNNGC	6 cut(s)	151, 158, 214, 271, 496, 543
CaiI	CAGNNNCTG	1 cut(s)	397
CfoI	GCGC	5 cut(s)	162, 218, 397, 452, 500
Cfr10I	RCCGGY	7 cut(s)	194, 212, 269, 323, 371, 446, 494
Cfr13I	GGNCC	4 cut(s)	49, 88, 148, 336
CseI	GACGC	2 cut(s)	241, 415
Csp6I	GTAC	1 cut(s)	457
CviAII	CATG	1 cut(s)	13
CviQI	GTAC	1 cut(s)	457
DdeI	CTNAG	2 cut(s)	6, 398
DinI	GGCGCC	1 cut(s)	217
DpnI	GATC	6 cut(s)	24, 81, 232, 293, 302, 356
DpnII	GATC	6 cut(s)	22, 79, 230, 291, 300, 354
EaeI	YGGCCR	2 cut(s)	325, 492
EagI	CGGCCG	1 cut(s)	325
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
EciI	GGCGGA	1 cut(s)	243
Ecl136II	GAGCTC	1 cut(s)	512
EclXI	CGGCCG	1 cut(s)	325
Eco24I	GRGCYC	2 cut(s)	441, 514
Eco47I	GGWCC	2 cut(s)	49, 88
Eco52I	CGGCCG	1 cut(s)	325
Eco53kI	GAGCTC	1 cut(s)	512
Eco88I	CYCGRG	1 cut(s)	313
EcoICRI	GAGCTC	1 cut(s)	512
EcoO109I	RGGNCCY	1 cut(s)	88
EcoRII	CCWGG	3 cut(s)	75, 84, 167
EcoT38I	GRGCYC	2 cut(s)	441, 514
EgeI	GGCGCC	1 cut(s)	217
EheI	GGCGCC	1 cut(s)	217
Esp3I	CGTCTC	1 cut(s)	250
FaeI	CATG	1 cut(s)	16
FaiI	YATR	3 cut(s)	14, 377, 568
FaqI	GGGAC	2 cut(s)	35, 74
FatI	CATG	1 cut(s)	12
FauI	CCCGC	2 cut(s)	158, 427
Fnu4HI	GCNGC	7 cut(s)	154, 163, 199, 385, 432, 465, 486
FriOI	GRGCYC	2 cut(s)	441, 514
Fsp4HI	GCNGC	7 cut(s)	154, 163, 199, 385, 432, 465, 486
FspBI	CTAG	1 cut(s)	515
GlaI	GCGC	5 cut(s)	161, 217, 396, 451, 499
GluI	GCNGC	7 cut(s)	154, 163, 199, 385, 432, 465, 486
GsuI	CTGGAG	1 cut(s)	68
HaeII	RGCGCY	4 cut(s)	163, 219, 398, 453
HaeIII	GGCC	6 cut(s)	149, 240, 269, 327, 338, 494
HgaI	GACGC	2 cut(s)	241, 415
HhaI	GCGC	5 cut(s)	162, 218, 397, 452, 500
Hin1I	GRCGYC	3 cut(s)	216, 252, 426
Hin1II	CATG	1 cut(s)	16
Hin6I	GCGC	5 cut(s)	160, 216, 395, 450, 498
HinP1I	GCGC	5 cut(s)	160, 216, 395, 450, 498
HinfI	GANTC	4 cut(s)	38, 60, 100, 178
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	3 cut(s)	22, 43, 564
Hpy188III	TCNNGA	3 cut(s)	26, 52, 289
Hpy8I	GTNNAC	1 cut(s)	457
Hpy99I	CGWCG	3 cut(s)	143, 239, 431
HpyAV	CCTTC	2 cut(s)	196, 271
HpyCH4III	ACNGT	1 cut(s)	461
HpyCH4IV	ACGT	1 cut(s)	558
HpyCH4V	TGCA	1 cut(s)	201
HpyF10VI	GCNNNNNNNGC	7 cut(s)	159, 162, 171, 491, 524, 533, 542
HpyF3I	CTNAG	2 cut(s)	6, 398
HpySE526I	ACGT	1 cut(s)	558
Hsp92I	GRCGYC	3 cut(s)	216, 252, 426
Hsp92II	CATG	1 cut(s)	16
HspAI	GCGC	5 cut(s)	160, 216, 395, 450, 498
KasI	GGCGCC	1 cut(s)	215
Kpn2I	TCCGGA	1 cut(s)	288
KroI	GCCGGC	3 cut(s)	212, 269, 494
KroNI	GCCGGC	3 cut(s)	214, 271, 496
Kzo9I	GATC	6 cut(s)	22, 79, 230, 291, 300, 354
LmnI	GCTCC	5 cut(s)	117, 170, 263, 291, 509
Lsp1109I	GCAGC	1 cut(s)	185
MaeI	CTAG	1 cut(s)	515
MaeII	ACGT	1 cut(s)	558
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	6 cut(s)	24, 81, 232, 293, 302, 356
MbiI	CCGCTC	3 cut(s)	165, 258, 384
MboI	GATC	6 cut(s)	22, 79, 230, 291, 300, 354
MboII	GAAGA	1 cut(s)	127
MfeI	CAATTG	1 cut(s)	93
MflI	RGATCY	3 cut(s)	79, 230, 300
MhlI	GDGCHC	2 cut(s)	441, 514
MluCI	AATT	1 cut(s)	93
Mly113I	GGCGCC	1 cut(s)	216
MlyI	GAGTC	2 cut(s)	32, 54
MmeI	TCCRAC	2 cut(s)	66, 484
MreI	CGCCGGCG	1 cut(s)	212
MroI	TCCGGA	1 cut(s)	288
MroNI	GCCGGC	3 cut(s)	212, 269, 494
MspR9I	CCNGG	5 cut(s)	47, 77, 86, 169, 329
MunI	CAATTG	1 cut(s)	93
MvaI	CCWGG	3 cut(s)	77, 86, 169
MvnI	CGCG	2 cut(s)	431, 500
MwoI	GCNNNNNNNGC	7 cut(s)	159, 162, 171, 491, 524, 533, 542
NaeI	GCCGGC	3 cut(s)	214, 271, 496
NarI	GGCGCC	1 cut(s)	216
NciI	CCSGG	2 cut(s)	47, 329
NdeII	GATC	6 cut(s)	22, 79, 230, 291, 300, 354
NgoMIV	GCCGGC	3 cut(s)	212, 269, 494
NlaIII	CATG	1 cut(s)	16
NlaIV	GGNNCC	6 cut(s)	51, 90, 217, 232, 302, 445
NmeAIII	GCCGAG	2 cut(s)	327, 420
NmuCI	GTSAC	1 cut(s)	317
PcsI	WCGNNNNNNNCGW	3 cut(s)	33, 249, 270
PdiI	GCCGGC	3 cut(s)	214, 271, 496
PfeI	GAWTC	2 cut(s)	100, 178
PflFI	GACNNNGTC	1 cut(s)	47
PkrI	GCNGC	7 cut(s)	155, 164, 200, 386, 433, 466, 487
PleI	GAGTC	2 cut(s)	32, 54
PluTI	GGCGCC	1 cut(s)	219
PpsI	GAGTC	2 cut(s)	32, 54
PpuMI	RGGWCCY	1 cut(s)	88
Psp124BI	GAGCTC	1 cut(s)	514
Psp5II	RGGWCCY	1 cut(s)	88
Psp6I	CCWGG	3 cut(s)	75, 84, 167
PspGI	CCWGG	3 cut(s)	75, 84, 167
PspN4I	GGNNCC	6 cut(s)	51, 90, 217, 232, 302, 445
PspPI	GGNCC	4 cut(s)	49, 88, 148, 336
PspPPI	RGGWCCY	1 cut(s)	88
PstNI	CAGNNNCTG	1 cut(s)	397
PsuI	RGATCY	3 cut(s)	79, 230, 300
PsyI	GACNNNGTC	1 cut(s)	47
RsaI	GTAC	1 cut(s)	458
RsaNI	GTAC	1 cut(s)	457
SacI	GAGCTC	1 cut(s)	514
SatI	GCNGC	7 cut(s)	154, 163, 199, 385, 432, 465, 486
Sau3AI	GATC	6 cut(s)	22, 79, 230, 291, 300, 354
Sau96I	GGNCC	4 cut(s)	49, 88, 148, 336
SchI	GAGTC	2 cut(s)	32, 54
ScrFI	CCNGG	5 cut(s)	47, 77, 86, 169, 329
SduI	GDGCHC	2 cut(s)	441, 514
SfoI	GGCGCC	1 cut(s)	217
SgrAI	CRCCGGYG	2 cut(s)	212, 446
SinI	GGWCC	2 cut(s)	49, 88
Sse9I	AATT	1 cut(s)	93
SspDI	GGCGCC	1 cut(s)	215
SspMI	CTAG	1 cut(s)	515
SstI	GAGCTC	1 cut(s)	514
StyD4I	CCNGG	5 cut(s)	45, 75, 84, 167, 327
TaaI	ACNGT	1 cut(s)	461
TaiI	ACGT	1 cut(s)	561
TaqI	TCGA	2 cut(s)	141, 264
TasI	AATT	1 cut(s)	93
TauI	GCSGC	6 cut(s)	156, 165, 387, 434, 467, 488
TfiI	GAWTC	2 cut(s)	100, 178
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	1 cut(s)	198
Tsp45I	GTSAC	1 cut(s)	317
TspGWI	ACGGA	1 cut(s)	223
Tth111I	GACNNNGTC	1 cut(s)	47
VpaK11BI	GGWCC	2 cut(s)	49, 88
XspI	CTAG	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.