Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0009876

Physical Location & Seq

Genomic Coordinates Forward (+)

8610348 .. 8610917

Gene Structure 570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g10530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCGCATCAAATGTCCCCTTCCGATCACGACCCCAACTCCGACTCGTCCAAGGCCCGCCTCTACAACCCCTACCAGGATCTCCAGGTTCCCATGCGAAACCTCTACCAGCTACCTACCTCCCCGGAGTTCCTCTTCGTCGAAGAGGCTAAACGTCAGCGTCGCTCCTGGGGCGAGAATCTCACCTTCTACACCGGCTGCTCCTACCTCGCCGGCGCAGTTGGAGGCGGCGCCGCGGGTCTCTTTTCCGGCGTTCGATCGTTCGAGTCTGGAGACACCACCAAGCTCAGGATCAATAGGGTTCTCAACTCCTCTGGCCACACGGGTCGGGTTTGGGGGAACCGGCTGGGCGTTATCGGGTTGATCTATGCGGGTATGGAGAGTGGGATTCAGGCGGTCAGAGACACTGACGATGTTTGGAATAGCGTTGCGGCTGGACTGGGAACTGGCGCGATTTACCGAGCTGCGAGGGGCGTGAGGTCGGCTGCGGTGGCTGGAGCTATTGGAGGAGTCCTGGTTGGCGTGGCGGTCACGGCGAAGCAGGCGGCCAAGCGATATGTGCCAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko04212 map04212

Pfam Domains

Protein Families

Tim17

Protein Analysis

190

Amino Acids

20.12

Weight (kDa)

9.67

Isoelectric Point (pI)

42.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	62 - 172	4.1e-31	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17530 AT1G17530 AT1G72750
fragaria_vesca	FvH4_6g34150 FvH4_6g34150 FvH4_6g34150
malus_domestica	MD08G1136500.v1.1 MD17G1172500.v1.1
prunus_persica	Prupe.3G045100_v2.0.a1
pyrus_communis	pycom09g10530 pycom17g17040
rosa_chinensis	RchiOBHm_Chr2g0144461
rosa_laevigata	RLG00000020083
rosa_multiflora	Rmu_sc0005789.1_g000013 Rmu_sc0007240.1_g000003
rosa_rugosa	Rorug02G0386900
rosa_samantha	Rh2AG439100 Rh2BG449400 Rh2CG426200 Rh2DG459200
rosa_wichuraiana	Rw2G035930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	230
AccII	CGCG	2 cut(s)	236, 452
AclWI	GGATC	2 cut(s)	87, 299
AcoI	YGGCCR	2 cut(s)	316, 546
AcyI	GRCGYC	1 cut(s)	231
AfiI	CCNNNNNNNGG	2 cut(s)	76, 288
AjnI	CCWGG	4 cut(s)	75, 84, 167, 513
AluBI	AGCT	4 cut(s)	112, 286, 464, 500
AluI	AGCT	4 cut(s)	112, 286, 464, 500
Alw26I	GTCTC	3 cut(s)	245, 267, 396
AlwI	GGATC	2 cut(s)	87, 299
AoxI	GGCC	3 cut(s)	54, 316, 546
ApeKI	GCWGC	3 cut(s)	198, 464, 485
AspLEI	GCGC	4 cut(s)	7, 218, 233, 452
AspS9I	GGNCC	1 cut(s)	55
AsuC2I	CCSGG	1 cut(s)	125
AsuHPI	GGTGA	1 cut(s)	175
BalI	TGGCCA	1 cut(s)	318
BanI	GGYRCC	1 cut(s)	230
BbvI	GCAGC	3 cut(s)	185, 451, 472
BceAI	ACGGC	1 cut(s)	549
BciT130I	CCWGG	4 cut(s)	77, 86, 169, 515
BcnI	CCSGG	1 cut(s)	125
BcoDI	GTCTC	3 cut(s)	245, 267, 396
BfoI	RGCGCY	1 cut(s)	234
BisI	GCNGC	7 cut(s)	199, 229, 234, 432, 465, 486, 546
BlsI	GCNGC	7 cut(s)	200, 230, 235, 433, 466, 487, 547
Bme1390I	CCNGG	5 cut(s)	77, 86, 125, 169, 515
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	3 cut(s)	90, 232, 341
BmrFI	CCNGG	5 cut(s)	77, 86, 125, 169, 515
BmrI	ACTGGG	1 cut(s)	449
BmsI	GCATC	1 cut(s)	16
BmuI	ACTGGG	1 cut(s)	449
BpmI	CTGGAG	3 cut(s)	68, 291, 516
Bpu10I	CCTNAGC	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	125
BsaHI	GRCGYC	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	4 cut(s)	51, 123, 168, 234
BsaXI	ACNNNNNCTCC	4 cut(s)	23, 53, 501, 531
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 288
Bse118I	RCCGGY	3 cut(s)	194, 212, 342
Bse1I	ACTGG	2 cut(s)	444, 451
BseBI	CCWGG	4 cut(s)	77, 86, 169, 515
BseDI	CCNNGG	4 cut(s)	51, 123, 168, 234
BseLI	CCNNNNNNNGG	2 cut(s)	76, 288
BseMII	CTCAG	1 cut(s)	301
BseNI	ACTGG	2 cut(s)	444, 451
BseRI	GAGGAG	2 cut(s)	301, 522
BseXI	GCAGC	3 cut(s)	185, 451, 472
BseYI	CCCAGC	1 cut(s)	346
Bsh1236I	CGCG	2 cut(s)	236, 452
Bsh1285I	CGRYCG	1 cut(s)	260
BshFI	GGCC	3 cut(s)	56, 318, 548
BshNI	GGYRCC	1 cut(s)	230
BsiEI	CGRYCG	1 cut(s)	260
BsiSI	CCGG	5 cut(s)	125, 195, 213, 249, 343
BslI	CCNNNNNNNGG	2 cut(s)	76, 288
BsmAI	GTCTC	3 cut(s)	245, 267, 396
BsnI	GGCC	3 cut(s)	56, 318, 548
Bso31I	GGTCTC	1 cut(s)	245
Bsp143I	GATC	5 cut(s)	25, 79, 257, 291, 363
BspANI	GGCC	3 cut(s)	56, 318, 548
BspCNI	CTCAG	1 cut(s)	300
BspFNI	CGCG	2 cut(s)	236, 452
BspLI	GGNNCC	3 cut(s)	90, 232, 341
BspPI	GGATC	2 cut(s)	87, 299
BspT107I	GGYRCC	1 cut(s)	230
BspTNI	GGTCTC	1 cut(s)	245
BsrFI	RCCGGY	3 cut(s)	194, 212, 342
BsrI	ACTGG	2 cut(s)	444, 451
BssAI	RCCGGY	3 cut(s)	194, 212, 342
BssECI	CCNNGG	4 cut(s)	51, 123, 168, 234
BssMI	GATC	5 cut(s)	25, 79, 257, 291, 363
BssNI	GRCGYC	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	4 cut(s)	77, 86, 169, 515
Bst6I	CTCTTC	2 cut(s)	138, 140
BstACI	GRCGYC	1 cut(s)	231
BstC8I	GCNNGC	3 cut(s)	58, 214, 543
BstDEI	CTNAG	1 cut(s)	287
BstDSI	CCRYGG	1 cut(s)	234
BstFNI	CGCG	2 cut(s)	236, 452
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	4 cut(s)	7, 218, 233, 452
BstKTI	GATC	5 cut(s)	28, 82, 260, 294, 366
BstMAI	GTCTC	3 cut(s)	245, 267, 396
BstMBI	GATC	5 cut(s)	25, 79, 257, 291, 363
BstMCI	CGRYCG	1 cut(s)	260
BstMWI	GCNNNNNNNGC	5 cut(s)	171, 491, 533, 542, 559
BstNI	CCWGG	4 cut(s)	77, 86, 169, 515
BstSCI	CCNGG	5 cut(s)	75, 84, 123, 167, 513
BstUI	CGCG	2 cut(s)	236, 452
BstV1I	GCAGC	3 cut(s)	185, 451, 472
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BsuRI	GGCC	3 cut(s)	56, 318, 548
BtgI	CCRYGG	1 cut(s)	234
BtsIMutI	CAGTG	1 cut(s)	405
Cac8I	GCNNGC	3 cut(s)	58, 214, 543
CfoI	GCGC	4 cut(s)	7, 218, 233, 452
Cfr10I	RCCGGY	3 cut(s)	194, 212, 342
Cfr13I	GGNCC	1 cut(s)	55
Cfr42I	CCGCGG	1 cut(s)	237
CseI	GACGC	1 cut(s)	149
CviAII	CATG	1 cut(s)	94
DdeI	CTNAG	1 cut(s)	287
DinI	GGCGCC	1 cut(s)	232
DpnI	GATC	5 cut(s)	27, 81, 259, 293, 365
DpnII	GATC	5 cut(s)	25, 79, 257, 291, 363
EaeI	YGGCCR	2 cut(s)	316, 546
Eam1104I	CTCTTC	2 cut(s)	138, 140
EarI	CTCTTC	2 cut(s)	138, 140
Eco130I	CCWWGG	1 cut(s)	51
Eco31I	GGTCTC	1 cut(s)	245
EcoRII	CCWGG	4 cut(s)	75, 84, 167, 513
EcoT14I	CCWWGG	1 cut(s)	51
EgeI	GGCGCC	1 cut(s)	232
EheI	GGCGCC	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	1 cut(s)	97
FaiI	YATR	5 cut(s)	95, 369, 377, 558, 568
FatI	CATG	1 cut(s)	93
FauI	CCCGC	3 cut(s)	65, 229, 364
Fnu4HI	GCNGC	7 cut(s)	199, 229, 234, 432, 465, 486, 546
Fsp4HI	GCNGC	7 cut(s)	199, 229, 234, 432, 465, 486, 546
GlaI	GCGC	4 cut(s)	6, 217, 232, 451
GluI	GCNGC	7 cut(s)	199, 229, 234, 432, 465, 486, 546
GsaI	CCCAGC	1 cut(s)	350
GsuI	CTGGAG	3 cut(s)	68, 291, 516
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	3 cut(s)	56, 318, 548
HapII	CCGG	5 cut(s)	125, 195, 213, 249, 343
HgaI	GACGC	1 cut(s)	149
HhaI	GCGC	4 cut(s)	7, 218, 233, 452
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	1 cut(s)	97
Hin6I	GCGC	4 cut(s)	5, 216, 231, 450
HinP1I	GCGC	4 cut(s)	5, 216, 231, 450
HinfI	GANTC	5 cut(s)	44, 178, 266, 388, 510
HpaII	CCGG	5 cut(s)	125, 195, 213, 249, 343
HphI	GGTGA	1 cut(s)	175
Hpy188I	TCNGA	3 cut(s)	25, 43, 401
Hpy188III	TCNNGA	3 cut(s)	29, 270, 289
Hpy99I	CGWCG	2 cut(s)	143, 165
HpyAV	CCTTC	2 cut(s)	30, 196
HpyCH4IV	ACGT	1 cut(s)	154
HpyF10VI	GCNNNNNNNGC	5 cut(s)	171, 491, 533, 542, 559
HpyF3I	CTNAG	1 cut(s)	287
HpySE526I	ACGT	1 cut(s)	154
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	97
HspAI	GCGC	4 cut(s)	5, 216, 231, 450
KasI	GGCGCC	1 cut(s)	230
KroI	GCCGGC	1 cut(s)	212
KroNI	GCCGGC	1 cut(s)	214
KspI	CCGCGG	1 cut(s)	237
Kzo9I	GATC	5 cut(s)	25, 79, 257, 291, 363
LmnI	GCTCC	3 cut(s)	170, 206, 497
Lsp1109I	GCAGC	3 cut(s)	185, 451, 472
LweI	GCATC	1 cut(s)	16
MaeII	ACGT	1 cut(s)	154
MaeIII	GTNAC	1 cut(s)	529
MalI	GATC	5 cut(s)	27, 81, 259, 293, 365
MboI	GATC	5 cut(s)	25, 79, 257, 291, 363
MboII	GAAGA	2 cut(s)	127, 155
MflI	RGATCY	1 cut(s)	79
MlsI	TGGCCA	1 cut(s)	318
MluNI	TGGCCA	1 cut(s)	318
Mly113I	GGCGCC	1 cut(s)	231
MlyI	GAGTC	3 cut(s)	38, 275, 519
MmeI	TCCRAC	2 cut(s)	66, 202
Mox20I	TGGCCA	1 cut(s)	318
MreI	CGCCGGCG	1 cut(s)	212
MroNI	GCCGGC	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	318
Msp20I	TGGCCA	1 cut(s)	318
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	5 cut(s)	125, 195, 213, 249, 343
MspR9I	CCNGG	5 cut(s)	77, 86, 125, 169, 515
MvaI	CCWGG	4 cut(s)	77, 86, 169, 515
MvnI	CGCG	2 cut(s)	236, 452
MwoI	GCNNNNNNNGC	5 cut(s)	171, 491, 533, 542, 559
NaeI	GCCGGC	1 cut(s)	214
NarI	GGCGCC	1 cut(s)	231
NciI	CCSGG	1 cut(s)	125
NdeII	GATC	5 cut(s)	25, 79, 257, 291, 363
NgoMIV	GCCGGC	1 cut(s)	212
NlaIII	CATG	1 cut(s)	97
NlaIV	GGNNCC	3 cut(s)	90, 232, 341
NmuCI	GTSAC	1 cut(s)	529
PdiI	GCCGGC	1 cut(s)	214
PfeI	GAWTC	2 cut(s)	178, 388
PkrI	GCNGC	7 cut(s)	200, 230, 235, 433, 466, 487, 547
Ple19I	CGATCG	1 cut(s)	260
PleI	GAGTC	3 cut(s)	38, 274, 518
PluTI	GGCGCC	1 cut(s)	234
PpsI	GAGTC	3 cut(s)	38, 274, 518
Psp6I	CCWGG	4 cut(s)	75, 84, 167, 513
PspFI	CCCAGC	1 cut(s)	346
PspGI	CCWGG	4 cut(s)	75, 84, 167, 513
PspN4I	GGNNCC	3 cut(s)	90, 232, 341
PspPI	GGNCC	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	79
PvuI	CGATCG	1 cut(s)	260
SacII	CCGCGG	1 cut(s)	237
SatI	GCNGC	7 cut(s)	199, 229, 234, 432, 465, 486, 546
Sau3AI	GATC	5 cut(s)	25, 79, 257, 291, 363
Sau96I	GGNCC	1 cut(s)	55
SchI	GAGTC	3 cut(s)	38, 275, 519
ScrFI	CCNGG	5 cut(s)	77, 86, 125, 169, 515
SfaNI	GCATC	1 cut(s)	16
SfoI	GGCGCC	1 cut(s)	232
Sfr303I	CCGCGG	1 cut(s)	237
SgrAI	CRCCGGYG	1 cut(s)	212
SgrBI	CCGCGG	1 cut(s)	237
SspDI	GGCGCC	1 cut(s)	230
StyD4I	CCNGG	5 cut(s)	75, 84, 123, 167, 513
StyI	CCWWGG	1 cut(s)	51
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	3 cut(s)	141, 256, 264
TauI	GCSGC	4 cut(s)	231, 236, 434, 548
TfiI	GAWTC	2 cut(s)	178, 388
TscAI	CASTG	1 cut(s)	412
TseFI	GTSAC	1 cut(s)	529
TseI	GCWGC	3 cut(s)	198, 464, 485
Tsp45I	GTSAC	1 cut(s)	529
TspRI	CASTG	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.