Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0009876

Physical Location & Seq

Genomic Coordinates Forward (+)

17794775 .. 17795453

Gene Structure 679 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1172500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCGCATCACATGTCCCCTTCCGATCACGACCCCAACTCTGACTCGTCCAAGGCCCGCCTCTACAACCCCTACCAGGACCTCCAGGTCCCCATGCGAAACCTCTACCAGCTCCCTACCTCTCCGGAGTTCCTCTTCGTCGAAGAGGCTAAACGTCAGCGTCGCTCCTGGGGCGAGAATCTCACTTTCTACACCGGCTGCTCCTACCTCGGCGGCGCTATTGGAGGCGGCGGCGCCGGTCTCGTTTCCGGCGTTCGATCGTTCGAATCTGGAGACACCACCAAGCTCAGGATCAATAGGGTTCTCAACTCCTCTGGCCACACGGGTCGTGTTTGGGGAAACCGGCTGGGCGTGATCGGGTTGATCTATGCTGGTATGGAGAGTGGGATTCAAGCGGTCAGAGATACCGAGGATGTTTGGAATAGCGTTGCGGCGGGACTGGGCACTGGAGCGATTTACCGAGCTGCAAAGGGCGTGAGGTCGGCTGCGGTGGCCGGAGCCGTTGGAGGAGTCCTTGTTGGCGTTGCCGTCACGGCAAGGCAGGCTGCCAAGCGATACGTGCCGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko04212 map04212

Pfam Domains

Protein Families

Tim17

Protein Analysis

190

Amino Acids

20.07

Weight (kDa)

9.67

Isoelectric Point (pI)

45.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	62 - 172	2.2e-30	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17530 AT1G17530 AT1G72750
fragaria_vesca	FvH4_6g34150 FvH4_6g34150 FvH4_6g34150
malus_domestica	MD08G1136500.v1.1 MD17G1172500.v1.1
prunus_persica	Prupe.3G045100_v2.0.a1
pyrus_communis	pycom09g10530 pycom17g17040
rosa_chinensis	RchiOBHm_Chr2g0144461
rosa_laevigata	RLG00000020083
rosa_multiflora	Rmu_sc0005789.1_g000013 Rmu_sc0007240.1_g000003
rosa_rugosa	Rorug02G0386900
rosa_samantha	Rh2AG439100 Rh2BG449400 Rh2CG426200 Rh2DG459200
rosa_wichuraiana	Rw2G035930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	86
AccB1I	GGYRCC	1 cut(s)	233
AccIII	TCCGGA	1 cut(s)	124
AciI	CCGC	8 cut(s)	58, 213, 228, 231, 395, 431, 434, 488
AclWI	GGATC	1 cut(s)	299
AcoI	YGGCCR	2 cut(s)	316, 492
AcyI	GRCGYC	1 cut(s)	234
AfiI	CCNNNNNNNGG	2 cut(s)	76, 288
AflIII	ACRYGT	1 cut(s)	12
AgsI	TTSAA	1 cut(s)	392
AjnI	CCWGG	3 cut(s)	75, 84, 167
AluBI	AGCT	3 cut(s)	112, 286, 464
AluI	AGCT	3 cut(s)	112, 286, 464
Alw26I	GTCTC	2 cut(s)	245, 267
AlwI	GGATC	1 cut(s)	299
Aor13HI	TCCGGA	1 cut(s)	124
AoxI	GGCC	3 cut(s)	54, 316, 492
ApeKI	GCWGC	4 cut(s)	198, 464, 485, 545
AspLEI	GCGC	3 cut(s)	7, 218, 236
AspS9I	GGNCC	3 cut(s)	55, 79, 88
AsuII	TTCGAA	1 cut(s)	264
AvaII	GGWCC	2 cut(s)	79, 88
BaeGI	GKGCMC	1 cut(s)	446
BalI	TGGCCA	1 cut(s)	318
BanI	GGYRCC	1 cut(s)	233
BbvI	GCAGC	4 cut(s)	185, 451, 472, 532
BceAI	ACGGC	3 cut(s)	485, 512, 549
BciT130I	CCWGG	3 cut(s)	77, 86, 169
BcoDI	GTCTC	2 cut(s)	245, 267
BfoI	RGCGCY	2 cut(s)	219, 237
BglI	GCCNNNNNGGC	1 cut(s)	533
BisI	GCNGC	8 cut(s)	199, 214, 229, 232, 432, 465, 486, 546
BlsI	GCNGC	8 cut(s)	200, 215, 230, 233, 433, 466, 487, 547
Bme1390I	CCNGG	3 cut(s)	77, 86, 169
Bme18I	GGWCC	2 cut(s)	79, 88
BmgT120I	GGNCC	3 cut(s)	55, 79, 88
BmiI	GGNNCC	3 cut(s)	90, 235, 499
BmrFI	CCNGG	3 cut(s)	77, 86, 169
BmrI	ACTGGG	1 cut(s)	449
BmsI	GCATC	1 cut(s)	16
BmuI	ACTGGG	1 cut(s)	449
BpmI	CTGGAG	3 cut(s)	68, 291, 468
Bpu10I	CCTNAGC	1 cut(s)	287
Bpu14I	TTCGAA	1 cut(s)	264
BsaAI	YACGTR	1 cut(s)	559
BsaHI	GRCGYC	1 cut(s)	234
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	4 cut(s)	51, 168, 208, 408
BsaWI	WCCGGW	1 cut(s)	124
BsaXI	ACNNNNNCTCC	2 cut(s)	501, 531
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 288
Bse118I	RCCGGY	3 cut(s)	194, 236, 342
Bse1I	ACTGG	2 cut(s)	444, 451
BseAI	TCCGGA	1 cut(s)	124
BseBI	CCWGG	3 cut(s)	77, 86, 169
BseDI	CCNNGG	4 cut(s)	51, 168, 208, 408
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	2 cut(s)	76, 288
BseMII	CTCAG	1 cut(s)	301
BseNI	ACTGG	2 cut(s)	444, 451
BseRI	GAGGAG	2 cut(s)	301, 522
BseSI	GKGCMC	1 cut(s)	446
BseXI	GCAGC	4 cut(s)	185, 451, 472, 532
BseYI	CCCAGC	1 cut(s)	346
Bsh1285I	CGRYCG	1 cut(s)	260
BshFI	GGCC	3 cut(s)	56, 318, 494
BshNI	GGYRCC	1 cut(s)	233
BsiEI	CGRYCG	1 cut(s)	260
BsiSI	CCGG	6 cut(s)	125, 195, 237, 249, 343, 495
BslFI	GGGAC	2 cut(s)	74, 450
BslI	CCNNNNNNNGG	2 cut(s)	76, 288
BsmAI	GTCTC	2 cut(s)	245, 267
BsmFI	GGGAC	2 cut(s)	74, 450
BsnI	GGCC	3 cut(s)	56, 318, 494
Bso31I	GGTCTC	1 cut(s)	245
Bsp119I	TTCGAA	1 cut(s)	264
Bsp1286I	GDGCHC	1 cut(s)	446
Bsp13I	TCCGGA	1 cut(s)	124
Bsp143I	GATC	5 cut(s)	25, 257, 291, 354, 363
BspACI	CCGC	8 cut(s)	58, 213, 228, 231, 395, 431, 434, 488
BspANI	GGCC	3 cut(s)	56, 318, 494
BspCNI	CTCAG	1 cut(s)	300
BspEI	TCCGGA	1 cut(s)	124
BspLI	GGNNCC	3 cut(s)	90, 235, 499
BspPI	GGATC	1 cut(s)	299
BspT104I	TTCGAA	1 cut(s)	264
BspT107I	GGYRCC	1 cut(s)	233
BspTNI	GGTCTC	1 cut(s)	245
BsrFI	RCCGGY	3 cut(s)	194, 236, 342
BsrI	ACTGG	2 cut(s)	444, 451
BssAI	RCCGGY	3 cut(s)	194, 236, 342
BssECI	CCNNGG	4 cut(s)	51, 168, 208, 408
BssMI	GATC	5 cut(s)	25, 257, 291, 354, 363
BssNI	GRCGYC	1 cut(s)	234
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	3 cut(s)	77, 86, 169
Bst6I	CTCTTC	2 cut(s)	138, 140
BstACI	GRCGYC	1 cut(s)	234
BstBAI	YACGTR	1 cut(s)	559
BstBI	TTCGAA	1 cut(s)	264
BstC8I	GCNNGC	2 cut(s)	58, 543
BstDEI	CTNAG	1 cut(s)	287
BstF5I	GGATG	1 cut(s)	418
BstH2I	RGCGCY	2 cut(s)	219, 237
BstHHI	GCGC	3 cut(s)	7, 218, 236
BstKTI	GATC	5 cut(s)	28, 260, 294, 357, 366
BstMAI	GTCTC	2 cut(s)	245, 267
BstMBI	GATC	5 cut(s)	25, 257, 291, 354, 363
BstMCI	CGRYCG	1 cut(s)	260
BstMWI	GCNNNNNNNGC	5 cut(s)	171, 491, 533, 542, 559
BstNI	CCWGG	3 cut(s)	77, 86, 169
BstNSI	RCATGY	1 cut(s)	16
BstSCI	CCNGG	3 cut(s)	75, 84, 167
BstSLI	GKGCMC	1 cut(s)	446
BstV1I	GCAGC	4 cut(s)	185, 451, 472, 532
BsuRI	GGCC	3 cut(s)	56, 318, 494
BtsCI	GGATG	1 cut(s)	418
BtsIMutI	CAGTG	1 cut(s)	444
Cac8I	GCNNGC	2 cut(s)	58, 543
CfoI	GCGC	3 cut(s)	7, 218, 236
Cfr10I	RCCGGY	3 cut(s)	194, 236, 342
Cfr13I	GGNCC	3 cut(s)	55, 79, 88
CseI	GACGC	1 cut(s)	149
CviAII	CATG	2 cut(s)	13, 94
DdeI	CTNAG	1 cut(s)	287
DinI	GGCGCC	1 cut(s)	235
DpnI	GATC	5 cut(s)	27, 259, 293, 356, 365
DpnII	GATC	5 cut(s)	25, 257, 291, 354, 363
DrdI	GACNNNNNNGTC	1 cut(s)	86
DseDI	GACNNNNNNGTC	1 cut(s)	86
EaeI	YGGCCR	2 cut(s)	316, 492
Eam1104I	CTCTTC	2 cut(s)	138, 140
EarI	CTCTTC	2 cut(s)	138, 140
Eco130I	CCWWGG	1 cut(s)	51
Eco31I	GGTCTC	1 cut(s)	245
Eco47I	GGWCC	2 cut(s)	79, 88
EcoO109I	RGGNCCY	2 cut(s)	79, 88
EcoRII	CCWGG	3 cut(s)	75, 84, 167
EcoT14I	CCWWGG	1 cut(s)	51
EgeI	GGCGCC	1 cut(s)	235
EheI	GGCGCC	1 cut(s)	235
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	2 cut(s)	16, 97
FaiI	YATR	5 cut(s)	14, 95, 369, 377, 568
FaqI	GGGAC	2 cut(s)	74, 450
FatI	CATG	2 cut(s)	12, 93
FauI	CCCGC	2 cut(s)	65, 427
Fnu4HI	GCNGC	8 cut(s)	199, 214, 229, 232, 432, 465, 486, 546
FokI	GGATG	1 cut(s)	425
Fsp4HI	GCNGC	8 cut(s)	199, 214, 229, 232, 432, 465, 486, 546
GlaI	GCGC	3 cut(s)	6, 217, 235
GluI	GCNGC	8 cut(s)	199, 214, 229, 232, 432, 465, 486, 546
GsaI	CCCAGC	1 cut(s)	350
GsuI	CTGGAG	3 cut(s)	68, 291, 468
HaeII	RGCGCY	2 cut(s)	219, 237
HaeIII	GGCC	3 cut(s)	56, 318, 494
HapII	CCGG	6 cut(s)	125, 195, 237, 249, 343, 495
HgaI	GACGC	1 cut(s)	149
HhaI	GCGC	3 cut(s)	7, 218, 236
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	2 cut(s)	16, 97
Hin6I	GCGC	3 cut(s)	5, 216, 234
HinP1I	GCGC	3 cut(s)	5, 216, 234
HinfI	GANTC	5 cut(s)	44, 178, 266, 388, 510
HpaII	CCGG	6 cut(s)	125, 195, 237, 249, 343, 495
Hpy188I	TCNGA	3 cut(s)	25, 43, 401
Hpy188III	TCNNGA	4 cut(s)	29, 125, 270, 289
Hpy99I	CGWCG	2 cut(s)	143, 165
HpyAV	CCTTC	1 cut(s)	30
HpyCH4IV	ACGT	2 cut(s)	154, 558
HpyCH4V	TGCA	1 cut(s)	467
HpyF10VI	GCNNNNNNNGC	5 cut(s)	171, 491, 533, 542, 559
HpyF3I	CTNAG	1 cut(s)	287
HpySE526I	ACGT	2 cut(s)	154, 558
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	2 cut(s)	16, 97
HspAI	GCGC	3 cut(s)	5, 216, 234
KasI	GGCGCC	1 cut(s)	233
Kpn2I	TCCGGA	1 cut(s)	124
Kzo9I	GATC	5 cut(s)	25, 257, 291, 354, 363
LmnI	GCTCC	5 cut(s)	117, 170, 206, 449, 497
Lsp1109I	GCAGC	4 cut(s)	185, 451, 472, 532
LweI	GCATC	1 cut(s)	16
MaeII	ACGT	2 cut(s)	154, 558
MaeIII	GTNAC	1 cut(s)	529
MalI	GATC	5 cut(s)	27, 259, 293, 356, 365
MboI	GATC	5 cut(s)	25, 257, 291, 354, 363
MboII	GAAGA	2 cut(s)	127, 155
MhlI	GDGCHC	1 cut(s)	446
MlsI	TGGCCA	1 cut(s)	318
MluNI	TGGCCA	1 cut(s)	318
Mly113I	GGCGCC	1 cut(s)	234
MlyI	GAGTC	2 cut(s)	38, 519
MmeI	TCCRAC	1 cut(s)	484
Mox20I	TGGCCA	1 cut(s)	318
MroI	TCCGGA	1 cut(s)	124
MscI	TGGCCA	1 cut(s)	318
Msp20I	TGGCCA	1 cut(s)	318
MspI	CCGG	6 cut(s)	125, 195, 237, 249, 343, 495
MspR9I	CCNGG	3 cut(s)	77, 86, 169
MvaI	CCWGG	3 cut(s)	77, 86, 169
MwoI	GCNNNNNNNGC	5 cut(s)	171, 491, 533, 542, 559
NarI	GGCGCC	1 cut(s)	234
NdeII	GATC	5 cut(s)	25, 257, 291, 354, 363
NlaIII	CATG	2 cut(s)	16, 97
NlaIV	GGNNCC	3 cut(s)	90, 235, 499
NmeAIII	GCCGAG	1 cut(s)	189
NmuCI	GTSAC	1 cut(s)	529
NspI	RCATGY	1 cut(s)	16
NspV	TTCGAA	1 cut(s)	264
PciI	ACATGT	1 cut(s)	12
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PfeI	GAWTC	3 cut(s)	178, 266, 388
PkrI	GCNGC	8 cut(s)	200, 215, 230, 233, 433, 466, 487, 547
Ple19I	CGATCG	1 cut(s)	260
PleI	GAGTC	2 cut(s)	38, 518
PluTI	GGCGCC	1 cut(s)	237
PpsI	GAGTC	2 cut(s)	38, 518
Ppu21I	YACGTR	1 cut(s)	559
PpuMI	RGGWCCY	2 cut(s)	79, 88
PscI	ACATGT	1 cut(s)	12
Psp5II	RGGWCCY	2 cut(s)	79, 88
Psp6I	CCWGG	3 cut(s)	75, 84, 167
PspFI	CCCAGC	1 cut(s)	346
PspGI	CCWGG	3 cut(s)	75, 84, 167
PspN4I	GGNNCC	3 cut(s)	90, 235, 499
PspPI	GGNCC	3 cut(s)	55, 79, 88
PspPPI	RGGWCCY	2 cut(s)	79, 88
PvuI	CGATCG	1 cut(s)	260
SatI	GCNGC	8 cut(s)	199, 214, 229, 232, 432, 465, 486, 546
Sau3AI	GATC	5 cut(s)	25, 257, 291, 354, 363
Sau96I	GGNCC	3 cut(s)	55, 79, 88
SchI	GAGTC	2 cut(s)	38, 519
ScrFI	CCNGG	3 cut(s)	77, 86, 169
SduI	GDGCHC	1 cut(s)	446
SfaNI	GCATC	1 cut(s)	16
SfoI	GGCGCC	1 cut(s)	235
SfuI	TTCGAA	1 cut(s)	264
SinI	GGWCC	2 cut(s)	79, 88
SsiI	CCGC	8 cut(s)	58, 213, 228, 231, 395, 431, 434, 488
SspDI	GGCGCC	1 cut(s)	233
StyD4I	CCNGG	3 cut(s)	75, 84, 167
StyI	CCWWGG	1 cut(s)	51
TaiI	ACGT	2 cut(s)	157, 561
TaqI	TCGA	3 cut(s)	141, 256, 264
TauI	GCSGC	4 cut(s)	216, 231, 234, 434
TfiI	GAWTC	3 cut(s)	178, 266, 388
TscAI	CASTG	1 cut(s)	451
TseFI	GTSAC	1 cut(s)	529
TseI	GCWGC	4 cut(s)	198, 464, 485, 545
Tsp45I	GTSAC	1 cut(s)	529
TspRI	CASTG	1 cut(s)	451
VpaK11BI	GGWCC	2 cut(s)	79, 88
XceI	RCATGY	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.