Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009876

Physical Location & Seq

Genomic Coordinates Forward (+)

27383320 .. 27384524

Gene Structure 1205 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G72750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCGGCTAATAACAGATCCGATCATGGGTCAGACGAAAACACAAGACTTTACAATCCTTACCAAAACTACGAAGTCCCAATCAACAAATCTCAGTACCTTTACAAGCTTCCTACCTCCCCTGAGTTTCTCTTCACGGAGGAGGCTTTAAGGCAACGTAGATCTTGGGGTGAGAATCTCACTTTCTACACCGGAACAGCTTACCTCGGTGGCTCCGTTGCCGGAGCTTCTGTTGGAGTCATCACTGGAGTCAAAAGCTTCGAATCTGGCGACACTACTAAGCTCAAAATCAACAGGATCTTGAACTCTTCTGGTCAAACTGGTCGAACTTGGGGTAATCGGATTGGTATCATTGGATTGGTTTACGCAGGGATCGAGAGTGGTATTGTGGCTGCCACGGATAGAGATGATGTTTGGACCAGTGTGGTGGCTGGTCTTGGAACCGGAGCTGTTTGTAGAGCGGCGAGAGGAGTGAGATCTGCAGCTGTAGCTGGTGCTCTTGGTGGACTTGCGGCTGGAGCTGTTGTAGCTGGGAAGCAAATTGTGAAGCGGTATGTGCCCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko04212 map04212

Pfam Domains

Protein Families

Tim17

Protein Analysis

188

Amino Acids

19.88

Weight (kDa)

9.55

Isoelectric Point (pI)

30.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	61 - 171	8.9e-25	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0009876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17530 AT1G17530 AT1G72750
fragaria_vesca	FvH4_6g34150 FvH4_6g34150 FvH4_6g34150
malus_domestica	MD08G1136500.v1.1 MD17G1172500.v1.1
prunus_persica	Prupe.3G045100_v2.0.a1
pyrus_communis	pycom09g10530 pycom17g17040
rosa_chinensis	RchiOBHm_Chr2g0144461
rosa_laevigata	RLG00000020083
rosa_multiflora	Rmu_sc0005789.1_g000013 Rmu_sc0007240.1_g000003
rosa_rugosa	Rorug02G0386900
rosa_samantha	Rh2AG439100 Rh2BG449400 Rh2CG426200 Rh2DG459200
rosa_wichuraiana	Rw2G035930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	461
AciI	CCGC	4 cut(s)	5, 461, 512, 550
AclWI	GGATC	3 cut(s)	12, 305, 380
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	1 cut(s)	27
AgsI	TTSAA	1 cut(s)	304
Alw21I	GWGCWC	1 cut(s)	499
AlwI	GGATC	3 cut(s)	12, 305, 380
ApeKI	GCWGC	2 cut(s)	392, 482
AspS9I	GGNCC	1 cut(s)	417
AsuHPI	GGTGA	1 cut(s)	182
AsuII	TTCGAA	1 cut(s)	261
AvaII	GGWCC	1 cut(s)	417
BaeGI	GKGCMC	1 cut(s)	561
Bbv12I	GWGCWC	1 cut(s)	499
BbvI	GCAGC	2 cut(s)	379, 494
BfmI	CTRYAG	2 cut(s)	480, 486
BglII	AGATCT	2 cut(s)	161, 476
BisI	GCNGC	5 cut(s)	6, 393, 462, 483, 513
BlsI	GCNGC	5 cut(s)	7, 394, 463, 484, 514
Bme18I	GGWCC	1 cut(s)	417
BmgT120I	GGNCC	1 cut(s)	417
BmiI	GGNNCC	2 cut(s)	214, 442
BpmI	CTGGAG	2 cut(s)	267, 537
Bpu14I	TTCGAA	1 cut(s)	261
BsaBI	GATNNNNATC	1 cut(s)	347
BsaJI	CCNNGG	2 cut(s)	205, 396
BsaWI	WCCGGW	2 cut(s)	191, 443
BsaXI	ACNNNNNCTCC	4 cut(s)	216, 246, 510, 540
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse1I	ACTGG	3 cut(s)	250, 325, 420
Bse8I	GATNNNNATC	1 cut(s)	347
BseDI	CCNNGG	2 cut(s)	205, 396
BseJI	GATNNNNATC	1 cut(s)	347
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMII	CTCAG	2 cut(s)	107, 114
BseNI	ACTGG	3 cut(s)	250, 325, 420
BseRI	GAGGAG	2 cut(s)	155, 483
BseSI	GKGCMC	1 cut(s)	561
BseXI	GCAGC	2 cut(s)	379, 494
BseYI	CCCAGC	1 cut(s)	530
BsiHKAI	GWGCWC	1 cut(s)	499
BsiSI	CCGG	3 cut(s)	192, 222, 444
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	62
Bsp119I	TTCGAA	1 cut(s)	261
Bsp1286I	GDGCHC	2 cut(s)	499, 561
Bsp143I	GATC	6 cut(s)	17, 22, 161, 297, 372, 476
BspACI	CCGC	4 cut(s)	5, 461, 512, 550
BspCNI	CTCAG	2 cut(s)	106, 115
BspLI	GGNNCC	2 cut(s)	214, 442
BspMAI	CTGCAG	1 cut(s)	484
BspPI	GGATC	3 cut(s)	12, 305, 380
BspT104I	TTCGAA	1 cut(s)	261
BsrBI	CCGCTC	1 cut(s)	461
BsrI	ACTGG	3 cut(s)	250, 325, 420
BssECI	CCNNGG	2 cut(s)	205, 396
BssMI	GATC	6 cut(s)	17, 22, 161, 297, 372, 476
Bst6I	CTCTTC	2 cut(s)	137, 313
BstBI	TTCGAA	1 cut(s)	261
BstDEI	CTNAG	3 cut(s)	93, 123, 279
BstDSI	CCRYGG	1 cut(s)	396
BstKTI	GATC	6 cut(s)	20, 25, 164, 300, 375, 479
BstMBI	GATC	6 cut(s)	17, 22, 161, 297, 372, 476
BstMWI	GCNNNNNNNGC	4 cut(s)	488, 518, 527, 556
BstSFI	CTRYAG	2 cut(s)	480, 486
BstSLI	GKGCMC	1 cut(s)	561
BstV1I	GCAGC	2 cut(s)	379, 494
BstX2I	RGATCY	4 cut(s)	17, 161, 297, 476
BstXI	CCANNNNNNTGG	1 cut(s)	427
BstYI	RGATCY	4 cut(s)	17, 161, 297, 476
BtgI	CCRYGG	1 cut(s)	396
BtsIMutI	CAGTG	2 cut(s)	243, 427
Cfr13I	GGNCC	1 cut(s)	417
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	1 cut(s)	26
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	3 cut(s)	93, 123, 279
DpnI	GATC	6 cut(s)	19, 24, 163, 299, 374, 478
DpnII	GATC	6 cut(s)	17, 22, 161, 297, 372, 476
Eam1104I	CTCTTC	2 cut(s)	137, 313
EarI	CTCTTC	2 cut(s)	137, 313
Eco47I	GGWCC	1 cut(s)	417
FaeI	CATG	1 cut(s)	29
FaiI	YATR	2 cut(s)	27, 555
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	1 cut(s)	25
Fnu4HI	GCNGC	5 cut(s)	6, 393, 462, 483, 513
Fsp4HI	GCNGC	5 cut(s)	6, 393, 462, 483, 513
GluI	GCNGC	5 cut(s)	6, 393, 462, 483, 513
GsaI	CCCAGC	1 cut(s)	534
GsuI	CTGGAG	2 cut(s)	267, 537
HapII	CCGG	3 cut(s)	192, 222, 444
Hin1II	CATG	1 cut(s)	29
HindIII	AAGCTT	2 cut(s)	107, 256
HinfI	GANTC	4 cut(s)	175, 237, 249, 263
HpaII	CCGG	3 cut(s)	192, 222, 444
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	2 cut(s)	364, 506
Hpy188I	TCNGA	3 cut(s)	22, 34, 342
Hpy188III	TCNNGA	2 cut(s)	301, 376
Hpy8I	GTNNAC	2 cut(s)	364, 506
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	1 cut(s)	482
HpyF10VI	GCNNNNNNNGC	4 cut(s)	488, 518, 527, 556
HpyF3I	CTNAG	3 cut(s)	93, 123, 279
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	1 cut(s)	29
Kzo9I	GATC	6 cut(s)	17, 22, 161, 297, 372, 476
LmnI	GCTCC	4 cut(s)	218, 224, 446, 518
Lsp1109I	GCAGC	2 cut(s)	379, 494
MaeII	ACGT	1 cut(s)	157
MalI	GATC	6 cut(s)	19, 24, 163, 299, 374, 478
MbiI	CCGCTC	1 cut(s)	461
MboI	GATC	6 cut(s)	17, 22, 161, 297, 372, 476
MboII	GAAGA	2 cut(s)	124, 300
MflI	RGATCY	4 cut(s)	17, 161, 297, 476
MhlI	GDGCHC	2 cut(s)	499, 561
MluCI	AATT	1 cut(s)	540
MlyI	GAGTC	2 cut(s)	246, 258
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	5 cut(s)	127, 133, 136, 215, 461
MseI	TTAA	1 cut(s)	149
MspA1I	CMGCKG	1 cut(s)	485
MspI	CCGG	3 cut(s)	192, 222, 444
MwoI	GCNNNNNNNGC	4 cut(s)	488, 518, 527, 556
NdeII	GATC	6 cut(s)	17, 22, 161, 297, 372, 476
NlaIII	CATG	1 cut(s)	29
NlaIV	GGNNCC	2 cut(s)	214, 442
NspV	TTCGAA	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	3 cut(s)	213, 267, 372
PfeI	GAWTC	2 cut(s)	175, 263
PkrI	GCNGC	5 cut(s)	7, 394, 463, 484, 514
PleI	GAGTC	2 cut(s)	245, 257
PpsI	GAGTC	2 cut(s)	245, 257
PspFI	CCCAGC	1 cut(s)	530
PspN4I	GGNNCC	2 cut(s)	214, 442
PspPI	GGNCC	1 cut(s)	417
PstI	CTGCAG	1 cut(s)	484
PsuI	RGATCY	4 cut(s)	17, 161, 297, 476
PvuII	CAGCTG	1 cut(s)	485
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	5 cut(s)	6, 393, 462, 483, 513
Sau3AI	GATC	6 cut(s)	17, 22, 161, 297, 372, 476
Sau96I	GGNCC	1 cut(s)	417
SchI	GAGTC	2 cut(s)	246, 258
SduI	GDGCHC	2 cut(s)	499, 561
SfcI	CTRYAG	2 cut(s)	480, 486
SfuI	TTCGAA	1 cut(s)	261
SinI	GGWCC	1 cut(s)	417
Sse9I	AATT	1 cut(s)	540
SsiI	CCGC	4 cut(s)	5, 461, 512, 550
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	3 cut(s)	261, 325, 375
TasI	AATT	1 cut(s)	540
TauI	GCSGC	3 cut(s)	8, 464, 515
TfiI	GAWTC	2 cut(s)	175, 263
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TscAI	CASTG	2 cut(s)	250, 427
TseI	GCWGC	2 cut(s)	392, 482
TspGWI	ACGGA	3 cut(s)	152, 205, 413
TspRI	CASTG	2 cut(s)	250, 427
VpaK11BI	GGWCC	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.