Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009876

Physical Location & Seq

Genomic Coordinates Forward (+)

3242156 .. 3243275

Gene Structure 1120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G045100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCTCATCACATGTCCTCTTCCGATCACGACCCGAACTCAGATGCGTCCAAGGCCCGCCTCTACAACCCGTACCAGGACCTCCAGGTCCCGATGCGAAACCTCTACCAGCTCCCAACGTCCCCGGAGTTCCTCTTCGTCGAAGAGGCTCGCCGTCAGCGTCGCTCCTGGGGAGAAAACCTAACCTTCTACACCGGCTGCTCCTATCTGGCCGGCGCAATCGGCGGCGGCACAACCGGTCTCGTCTCCGGTGTCCGCTCCTTCGAGGCCGGCGACACCACCAAGCTCAGGATCAACAGGGTACTCAACTCCTCGGGCCACACGGGTCGGGTCTGGGGAAACCGGCTGGGCGTGATCGGGTTGATCTATGCGGGTATGGAGAGTGGGATTCAGGCGGTGAGAGATACGGACGATGTTTTGAATAGCATCGCGGCCGGACTCACCACCGGCGCGGTGTACCGAGCTGCGAGGGGCGTGAGGTCGGCCGCGGTGGCCGGAGCCGTCGGAGGAGTCTTGGTCGGTGTGGCTGTCACGGGGAAGCAGGCGCTCAAGCGATACGTGCCGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko04212 map04212

Pfam Domains

Protein Families

Tim17

Protein Analysis

190

Amino Acids

20.13

Weight (kDa)

9.71

Isoelectric Point (pI)

36.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17530 AT1G17530 AT1G72750
fragaria_vesca	FvH4_6g34150 FvH4_6g34150 FvH4_6g34150
malus_domestica	MD08G1136500.v1.1 MD17G1172500.v1.1
prunus_persica	Prupe.3G045100_v2.0.a1
pyrus_communis	pycom09g10530 pycom17g17040
rosa_chinensis	RchiOBHm_Chr2g0144461
rosa_laevigata	RLG00000020083
rosa_multiflora	Rmu_sc0005789.1_g000013 Rmu_sc0007240.1_g000003
rosa_rugosa	Rorug02G0386900
rosa_samantha	Rh2AG439100 Rh2BG449400 Rh2CG426200 Rh2DG459200
rosa_wichuraiana	Rw2G035930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	86
AccBSI	CCGCTC	1 cut(s)	258
AccII	CGCG	3 cut(s)	431, 452, 488
AclWI	GGATC	1 cut(s)	299
AcoI	YGGCCR	4 cut(s)	210, 432, 483, 492
AfaI	GTAC	3 cut(s)	74, 303, 458
AfiI	CCNNNNNNNGG	2 cut(s)	76, 288
AflIII	ACRYGT	1 cut(s)	12
AgeI	ACCGGT	1 cut(s)	236
AgsI	TTSAA	1 cut(s)	421
AjnI	CCWGG	3 cut(s)	75, 84, 167
AluBI	AGCT	3 cut(s)	112, 286, 464
AluI	AGCT	3 cut(s)	112, 286, 464
Alw26I	GTCTC	2 cut(s)	245, 250
AlwI	GGATC	1 cut(s)	299
Ama87I	CYCGRG	1 cut(s)	313
AoxI	GGCC	7 cut(s)	54, 210, 267, 316, 432, 483, 492
ApeKI	GCWGC	2 cut(s)	198, 464
AsiGI	ACCGGT	1 cut(s)	236
AspLEI	GCGC	3 cut(s)	218, 452, 547
AspS9I	GGNCC	4 cut(s)	55, 79, 88, 316
AsuC2I	CCSGG	1 cut(s)	125
AsuHPI	GGTGA	2 cut(s)	409, 433
AvaI	CYCGRG	1 cut(s)	313
AvaII	GGWCC	2 cut(s)	79, 88
BbvI	GCAGC	2 cut(s)	185, 451
BceAI	ACGGC	2 cut(s)	138, 485
BciT130I	CCWGG	3 cut(s)	77, 86, 169
BcnI	CCSGG	1 cut(s)	125
BcoDI	GTCTC	2 cut(s)	245, 250
BfoI	RGCGCY	1 cut(s)	548
BglI	GCCNNNNNGGC	1 cut(s)	491
BisI	GCNGC	6 cut(s)	199, 226, 229, 432, 465, 486
BlsI	GCNGC	6 cut(s)	200, 227, 230, 433, 466, 487
Bme1390I	CCNGG	4 cut(s)	77, 86, 125, 169
Bme18I	GGWCC	2 cut(s)	79, 88
BmeT110I	CYCGRG	1 cut(s)	313
BmgT120I	GGNCC	4 cut(s)	55, 79, 88, 316
BmiI	GGNNCC	2 cut(s)	90, 499
BmrFI	CCNGG	4 cut(s)	77, 86, 125, 169
BmsI	GCATC	3 cut(s)	34, 84, 435
BpmI	CTGGAG	1 cut(s)	68
Bpu10I	CCTNAGC	1 cut(s)	287
BpuEI	CTTGAG	1 cut(s)	533
BpuMI	CCSGG	1 cut(s)	125
BsaAI	YACGTR	1 cut(s)	559
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	5 cut(s)	51, 123, 168, 312, 486
BsaWI	WCCGGW	2 cut(s)	236, 248
BsaXI	ACNNNNNCTCC	2 cut(s)	501, 531
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 288
Bse118I	RCCGGY	6 cut(s)	194, 212, 236, 269, 342, 446
BseBI	CCWGG	3 cut(s)	77, 86, 169
BseDI	CCNNGG	5 cut(s)	51, 123, 168, 312, 486
BseLI	CCNNNNNNNGG	2 cut(s)	76, 288
BseMII	CTCAG	2 cut(s)	54, 301
BseRI	GAGGAG	2 cut(s)	301, 522
BseX3I	CGGCCG	2 cut(s)	432, 483
BseXI	GCAGC	2 cut(s)	185, 451
BseYI	CCCAGC	1 cut(s)	346
Bsh1236I	CGCG	3 cut(s)	431, 452, 488
Bsh1285I	CGRYCG	2 cut(s)	435, 486
BshFI	GGCC	7 cut(s)	56, 212, 269, 318, 434, 485, 494
BshTI	ACCGGT	1 cut(s)	236
BsiEI	CGRYCG	2 cut(s)	435, 486
BsiHKCI	CYCGRG	1 cut(s)	313
BslFI	GGGAC	2 cut(s)	74, 106
BslI	CCNNNNNNNGG	2 cut(s)	76, 288
BsmAI	GTCTC	2 cut(s)	245, 250
BsmBI	CGTCTC	1 cut(s)	250
BsmFI	GGGAC	2 cut(s)	74, 106
BsnI	GGCC	7 cut(s)	56, 212, 269, 318, 434, 485, 494
Bso31I	GGTCTC	1 cut(s)	245
BsoBI	CYCGRG	1 cut(s)	313
Bsp143I	GATC	4 cut(s)	25, 291, 354, 363
BspANI	GGCC	7 cut(s)	56, 212, 269, 318, 434, 485, 494
BspCNI	CTCAG	2 cut(s)	53, 300
BspFNI	CGCG	3 cut(s)	431, 452, 488
BspLI	GGNNCC	2 cut(s)	90, 499
BspPI	GGATC	1 cut(s)	299
BspTNI	GGTCTC	1 cut(s)	245
BsrBI	CCGCTC	1 cut(s)	258
BsrFI	RCCGGY	6 cut(s)	194, 212, 236, 269, 342, 446
BssAI	RCCGGY	6 cut(s)	194, 212, 236, 269, 342, 446
BssECI	CCNNGG	5 cut(s)	51, 123, 168, 312, 486
BssMI	GATC	4 cut(s)	25, 291, 354, 363
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	3 cut(s)	77, 86, 169
Bst6I	CTCTTC	3 cut(s)	25, 138, 140
BstBAI	YACGTR	1 cut(s)	559
BstC8I	GCNNGC	5 cut(s)	58, 151, 214, 271, 543
BstDEI	CTNAG	2 cut(s)	40, 287
BstDSI	CCRYGG	1 cut(s)	486
BstFNI	CGCG	3 cut(s)	431, 452, 488
BstH2I	RGCGCY	1 cut(s)	548
BstHHI	GCGC	3 cut(s)	218, 452, 547
BstKTI	GATC	4 cut(s)	28, 294, 357, 366
BstMAI	GTCTC	2 cut(s)	245, 250
BstMBI	GATC	4 cut(s)	25, 291, 354, 363
BstMCI	CGRYCG	2 cut(s)	435, 486
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 222, 491, 559
BstNI	CCWGG	3 cut(s)	77, 86, 169
BstNSI	RCATGY	1 cut(s)	16
BstSCI	CCNGG	4 cut(s)	75, 84, 123, 167
BstUI	CGCG	3 cut(s)	431, 452, 488
BstV1I	GCAGC	2 cut(s)	185, 451
BstZI	CGGCCG	2 cut(s)	432, 483
BsuRI	GGCC	7 cut(s)	56, 212, 269, 318, 434, 485, 494
BtgI	CCRYGG	1 cut(s)	486
BtgZI	GCGATG	1 cut(s)	412
Cac8I	GCNNGC	5 cut(s)	58, 151, 214, 271, 543
CfoI	GCGC	3 cut(s)	218, 452, 547
Cfr10I	RCCGGY	6 cut(s)	194, 212, 236, 269, 342, 446
Cfr13I	GGNCC	4 cut(s)	55, 79, 88, 316
Cfr42I	CCGCGG	1 cut(s)	489
CseI	GACGC	2 cut(s)	36, 149
Csp6I	GTAC	3 cut(s)	73, 302, 457
CspAI	ACCGGT	1 cut(s)	236
CviAII	CATG	1 cut(s)	13
CviQI	GTAC	3 cut(s)	73, 302, 457
DdeI	CTNAG	2 cut(s)	40, 287
DpnI	GATC	4 cut(s)	27, 293, 356, 365
DpnII	GATC	4 cut(s)	25, 291, 354, 363
DrdI	GACNNNNNNGTC	1 cut(s)	86
DseDI	GACNNNNNNGTC	1 cut(s)	86
EaeI	YGGCCR	4 cut(s)	210, 432, 483, 492
EagI	CGGCCG	2 cut(s)	432, 483
Eam1104I	CTCTTC	3 cut(s)	25, 138, 140
EarI	CTCTTC	3 cut(s)	25, 138, 140
EclXI	CGGCCG	2 cut(s)	432, 483
Eco130I	CCWWGG	1 cut(s)	51
Eco31I	GGTCTC	1 cut(s)	245
Eco47I	GGWCC	2 cut(s)	79, 88
Eco52I	CGGCCG	2 cut(s)	432, 483
Eco88I	CYCGRG	1 cut(s)	313
EcoO109I	RGGNCCY	2 cut(s)	79, 88
EcoRII	CCWGG	3 cut(s)	75, 84, 167
EcoT14I	CCWWGG	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	51
Esp3I	CGTCTC	1 cut(s)	250
FaeI	CATG	1 cut(s)	16
FaiI	YATR	4 cut(s)	14, 369, 377, 568
FaqI	GGGAC	2 cut(s)	74, 106
FatI	CATG	1 cut(s)	12
FauI	CCCGC	2 cut(s)	65, 364
Fnu4HI	GCNGC	6 cut(s)	199, 226, 229, 432, 465, 486
Fsp4HI	GCNGC	6 cut(s)	199, 226, 229, 432, 465, 486
GlaI	GCGC	3 cut(s)	217, 451, 546
GluI	GCNGC	6 cut(s)	199, 226, 229, 432, 465, 486
GsaI	CCCAGC	1 cut(s)	350
GsuI	CTGGAG	1 cut(s)	68
HaeII	RGCGCY	1 cut(s)	548
HaeIII	GGCC	7 cut(s)	56, 212, 269, 318, 434, 485, 494
HgaI	GACGC	2 cut(s)	36, 149
HhaI	GCGC	3 cut(s)	218, 452, 547
Hin1II	CATG	1 cut(s)	16
Hin6I	GCGC	3 cut(s)	216, 450, 545
HinP1I	GCGC	3 cut(s)	216, 450, 545
HinfI	GANTC	3 cut(s)	388, 438, 510
HphI	GGTGA	2 cut(s)	409, 433
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	3 cut(s)	25, 43, 506
Hpy188III	TCNNGA	3 cut(s)	29, 91, 289
Hpy8I	GTNNAC	1 cut(s)	457
Hpy99I	CGWCG	3 cut(s)	143, 165, 506
HpyAV	CCTTC	2 cut(s)	196, 271
HpyCH4IV	ACGT	2 cut(s)	119, 558
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 222, 491, 559
HpyF3I	CTNAG	2 cut(s)	40, 287
HpySE526I	ACGT	2 cut(s)	119, 558
Hsp92II	CATG	1 cut(s)	16
HspAI	GCGC	3 cut(s)	216, 450, 545
KroI	GCCGGC	2 cut(s)	212, 269
KroNI	GCCGGC	2 cut(s)	214, 271
KspI	CCGCGG	1 cut(s)	489
Kzo9I	GATC	4 cut(s)	25, 291, 354, 363
LmnI	GCTCC	5 cut(s)	117, 170, 206, 263, 497
Lsp1109I	GCAGC	2 cut(s)	185, 451
LweI	GCATC	3 cut(s)	34, 84, 435
MaeII	ACGT	2 cut(s)	119, 558
MaeIII	GTNAC	1 cut(s)	529
MalI	GATC	4 cut(s)	27, 293, 356, 365
MbiI	CCGCTC	1 cut(s)	258
MboI	GATC	4 cut(s)	25, 291, 354, 363
MboII	GAAGA	3 cut(s)	12, 127, 155
MlyI	GAGTC	2 cut(s)	432, 519
MmeI	TCCRAC	1 cut(s)	484
MroNI	GCCGGC	2 cut(s)	212, 269
MspA1I	CMGCKG	1 cut(s)	488
MspR9I	CCNGG	4 cut(s)	77, 86, 125, 169
MvaI	CCWGG	3 cut(s)	77, 86, 169
MvnI	CGCG	3 cut(s)	431, 452, 488
MwoI	GCNNNNNNNGC	4 cut(s)	53, 222, 491, 559
NaeI	GCCGGC	2 cut(s)	214, 271
NciI	CCSGG	1 cut(s)	125
NdeII	GATC	4 cut(s)	25, 291, 354, 363
NgoMIV	GCCGGC	2 cut(s)	212, 269
NlaIII	CATG	1 cut(s)	16
NlaIV	GGNNCC	2 cut(s)	90, 499
NmuCI	GTSAC	1 cut(s)	529
NspI	RCATGY	1 cut(s)	16
PciI	ACATGT	1 cut(s)	12
PcsI	WCGNNNNNNNCGW	2 cut(s)	157, 270
PdiI	GCCGGC	2 cut(s)	214, 271
PfeI	GAWTC	1 cut(s)	388
PinAI	ACCGGT	1 cut(s)	236
PkrI	GCNGC	6 cut(s)	200, 227, 230, 433, 466, 487
PleI	GAGTC	2 cut(s)	432, 518
PpsI	GAGTC	2 cut(s)	432, 518
Ppu21I	YACGTR	1 cut(s)	559
PpuMI	RGGWCCY	2 cut(s)	79, 88
PscI	ACATGT	1 cut(s)	12
Psp5II	RGGWCCY	2 cut(s)	79, 88
Psp6I	CCWGG	3 cut(s)	75, 84, 167
PspFI	CCCAGC	1 cut(s)	346
PspGI	CCWGG	3 cut(s)	75, 84, 167
PspN4I	GGNNCC	2 cut(s)	90, 499
PspPI	GGNCC	4 cut(s)	55, 79, 88, 316
PspPPI	RGGWCCY	2 cut(s)	79, 88
RsaI	GTAC	3 cut(s)	74, 303, 458
RsaNI	GTAC	3 cut(s)	73, 302, 457
SacII	CCGCGG	1 cut(s)	489
SatI	GCNGC	6 cut(s)	199, 226, 229, 432, 465, 486
Sau3AI	GATC	4 cut(s)	25, 291, 354, 363
Sau96I	GGNCC	4 cut(s)	55, 79, 88, 316
SchI	GAGTC	2 cut(s)	432, 519
ScrFI	CCNGG	4 cut(s)	77, 86, 125, 169
SfaNI	GCATC	3 cut(s)	34, 84, 435
SfiI	GGCCNNNNNGGCC	1 cut(s)	491
Sfr303I	CCGCGG	1 cut(s)	489
SgrAI	CRCCGGYG	1 cut(s)	446
SgrBI	CCGCGG	1 cut(s)	489
SinI	GGWCC	2 cut(s)	79, 88
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
StyD4I	CCNGG	4 cut(s)	75, 84, 123, 167
StyI	CCWWGG	1 cut(s)	51
TaiI	ACGT	2 cut(s)	122, 561
TaqI	TCGA	2 cut(s)	141, 264
TauI	GCSGC	4 cut(s)	228, 231, 434, 488
TfiI	GAWTC	1 cut(s)	388
TseFI	GTSAC	1 cut(s)	529
TseI	GCWGC	2 cut(s)	198, 464
Tsp45I	GTSAC	1 cut(s)	529
TspGWI	ACGGA	1 cut(s)	422
VpaK11BI	GGWCC	2 cut(s)	79, 88
XceI	RCATGY	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.