Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0009876

Physical Location & Seq

Genomic Coordinates Reverse (-)

59007000 .. 59007568

Gene Structure 569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G035930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTCTCAACCCATGTCCTCCGATCACGACCACAACAACTCCGACCCGGTCCCGACCCGCCTCTACAACCCCTACCAAGATCTCCAGGTCCCAATTCAAAACCTTTACCAGCTCCCCACCTCCCCGGAGTTCCTCTTCGTCGAGGAGGCCCGCCGCCAGCGCCGCTCCTGGGGCGAGAATCTCACCTTCTACACCGGCTGCACCTACCTCGCCGGCGCCGTCGCCGGCGGATCCGTCGGCCTCGTCTCCGGCGTCCGATCGTTCGAATCCGGCGACACCACCAAGCTCAGGATCAACCGGGTCCTCAACTCGTCGGGTCACACGGGTCGGGTCTGGGCCAACCGGCTCGGCGTGATCGGGTTGCTCTATGCGGGTATGGAGAGCGGGGTTCAGGCGCTGAGGGATACGGATGATGTGTGGAATAGCGGGGTGAGGTCGGCGGCGGTGGCCGGCGCCGTTGGAGGAGTGCTGGTCGGAGTGGCAGTTGCGGCAAAGCAGGGGCTGAAGCGATACGTGCCGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko04212 map04212

Pfam Domains

Protein Families

Tim17

Protein Analysis

174

Amino Acids

18.75

Weight (kDa)

8.82

Isoelectric Point (pI)

55.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	62 - 163	3.2e-21	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17530 AT1G17530 AT1G72750
fragaria_vesca	FvH4_6g34150 FvH4_6g34150 FvH4_6g34150
malus_domestica	MD08G1136500.v1.1 MD17G1172500.v1.1
prunus_persica	Prupe.3G045100_v2.0.a1
pyrus_communis	pycom09g10530 pycom17g17040
rosa_chinensis	RchiOBHm_Chr2g0144461
rosa_laevigata	RLG00000020083
rosa_multiflora	Rmu_sc0005789.1_g000013 Rmu_sc0007240.1_g000003
rosa_rugosa	Rorug02G0386900
rosa_samantha	Rh2AG439100 Rh2BG449400 Rh2CG426200 Rh2DG459200
rosa_wichuraiana	Rw2G035930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	215, 452
AccBSI	CCGCTC	2 cut(s)	165, 384
AclWI	GGATC	3 cut(s)	225, 238, 299
AcoI	YGGCCR	1 cut(s)	447
AcuI	CTGAAG	1 cut(s)	524
AcyI	GRCGYC	3 cut(s)	216, 252, 453
AfiI	CCNNNNNNNGG	2 cut(s)	169, 288
AgsI	TTSAA	1 cut(s)	98
AjnI	CCWGG	2 cut(s)	84, 167
AluBI	AGCT	2 cut(s)	112, 286
AluI	AGCT	2 cut(s)	112, 286
Alw26I	GTCTC	2 cut(s)	9, 250
AlwI	GGATC	3 cut(s)	225, 238, 299
AlwNI	CAGNNNCTG	2 cut(s)	397, 502
AoxI	GGCC	4 cut(s)	147, 238, 336, 447
ApeKI	GCWGC	1 cut(s)	198
AspLEI	GCGC	4 cut(s)	162, 218, 397, 455
AspS9I	GGNCC	5 cut(s)	49, 88, 148, 301, 336
AsuC2I	CCSGG	3 cut(s)	47, 125, 299
AsuHPI	GGTGA	2 cut(s)	175, 442
AsuII	TTCGAA	1 cut(s)	264
AvaII	GGWCC	3 cut(s)	49, 88, 301
BamHI	GGATCC	1 cut(s)	230
BanI	GGYRCC	2 cut(s)	215, 452
BbvCI	CCTCAGC	1 cut(s)	398
BbvI	GCAGC	1 cut(s)	185
BceAI	ACGGC	2 cut(s)	203, 440
BcgI	CGANNNNNNTGC	2 cut(s)	190, 224
BciT130I	CCWGG	2 cut(s)	86, 169
BciVI	GTATCC	1 cut(s)	397
BcnI	CCSGG	3 cut(s)	47, 125, 299
BcoDI	GTCTC	2 cut(s)	9, 250
BfoI	RGCGCY	4 cut(s)	163, 219, 398, 456
BfuI	GTATCC	1 cut(s)	397
BglII	AGATCT	1 cut(s)	79
BisI	GCNGC	5 cut(s)	154, 163, 199, 441, 489
BlsI	GCNGC	5 cut(s)	155, 164, 200, 442, 490
Bme1390I	CCNGG	5 cut(s)	47, 86, 125, 169, 299
Bme18I	GGWCC	3 cut(s)	49, 88, 301
BmgT120I	GGNCC	5 cut(s)	49, 88, 148, 301, 336
BmiI	GGNNCC	6 cut(s)	51, 90, 217, 232, 302, 454
BmrFI	CCNGG	5 cut(s)	47, 86, 125, 169, 299
BpmI	CTGGAG	1 cut(s)	68
Bpu10I	CCTNAGC	2 cut(s)	287, 398
Bpu14I	TTCGAA	1 cut(s)	264
BpuMI	CCSGG	3 cut(s)	47, 125, 299
BsaAI	YACGTR	1 cut(s)	514
BsaHI	GRCGYC	3 cut(s)	216, 252, 453
BsaJI	CCNNGG	2 cut(s)	123, 168
BsaXI	ACNNNNNCTCC	6 cut(s)	23, 53, 456, 468, 486, 498
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 288
Bse118I	RCCGGY	5 cut(s)	194, 212, 224, 342, 449
BseBI	CCWGG	2 cut(s)	86, 169
BseDI	CCNNGG	2 cut(s)	123, 168
BseGI	GGATG	1 cut(s)	415
BseLI	CCNNNNNNNGG	2 cut(s)	169, 288
BseMII	CTCAG	2 cut(s)	301, 389
BseRI	GAGGAG	2 cut(s)	158, 477
BseXI	GCAGC	1 cut(s)	185
BsgI	GTGCAG	1 cut(s)	184
Bsh1285I	CGRYCG	1 cut(s)	260
BshFI	GGCC	4 cut(s)	149, 240, 338, 449
BshNI	GGYRCC	2 cut(s)	215, 452
BsiEI	CGRYCG	1 cut(s)	260
BslFI	GGGAC	2 cut(s)	35, 74
BslI	CCNNNNNNNGG	2 cut(s)	169, 288
BsmAI	GTCTC	2 cut(s)	9, 250
BsmBI	CGTCTC	1 cut(s)	250
BsmFI	GGGAC	2 cut(s)	35, 74
BsnI	GGCC	4 cut(s)	149, 240, 338, 449
Bsp119I	TTCGAA	1 cut(s)	264
Bsp143I	GATC	6 cut(s)	22, 79, 230, 257, 291, 354
BspANI	GGCC	4 cut(s)	149, 240, 338, 449
BspCNI	CTCAG	2 cut(s)	300, 390
BspLI	GGNNCC	6 cut(s)	51, 90, 217, 232, 302, 454
BspPI	GGATC	3 cut(s)	225, 238, 299
BspT104I	TTCGAA	1 cut(s)	264
BspT107I	GGYRCC	2 cut(s)	215, 452
BsrBI	CCGCTC	2 cut(s)	165, 384
BsrFI	RCCGGY	5 cut(s)	194, 212, 224, 342, 449
BssAI	RCCGGY	5 cut(s)	194, 212, 224, 342, 449
BssECI	CCNNGG	2 cut(s)	123, 168
BssMI	GATC	6 cut(s)	22, 79, 230, 257, 291, 354
BssNI	GRCGYC	3 cut(s)	216, 252, 453
Bst2UI	CCWGG	2 cut(s)	86, 169
Bst6I	CTCTTC	1 cut(s)	140
BstACI	GRCGYC	3 cut(s)	216, 252, 453
BstBAI	YACGTR	1 cut(s)	514
BstBI	TTCGAA	1 cut(s)	264
BstC8I	GCNNGC	5 cut(s)	151, 158, 214, 226, 451
BstDEI	CTNAG	2 cut(s)	287, 398
BstF5I	GGATG	1 cut(s)	415
BstH2I	RGCGCY	4 cut(s)	163, 219, 398, 456
BstHHI	GCGC	4 cut(s)	162, 218, 397, 455
BstKTI	GATC	6 cut(s)	25, 82, 233, 260, 294, 357
BstMAI	GTCTC	2 cut(s)	9, 250
BstMBI	GATC	6 cut(s)	22, 79, 230, 257, 291, 354
BstMCI	CGRYCG	1 cut(s)	260
BstMWI	GCNNNNNNNGC	6 cut(s)	159, 162, 171, 446, 488, 514
BstNI	CCWGG	2 cut(s)	86, 169
BstSCI	CCNGG	5 cut(s)	45, 84, 123, 167, 297
BstV1I	GCAGC	1 cut(s)	185
BstX2I	RGATCY	2 cut(s)	79, 230
BstYI	RGATCY	2 cut(s)	79, 230
BsuI	GTATCC	1 cut(s)	397
BsuRI	GGCC	4 cut(s)	149, 240, 338, 449
BtsCI	GGATG	1 cut(s)	415
Cac8I	GCNNGC	5 cut(s)	151, 158, 214, 226, 451
CaiI	CAGNNNCTG	2 cut(s)	397, 502
CfoI	GCGC	4 cut(s)	162, 218, 397, 455
Cfr10I	RCCGGY	5 cut(s)	194, 212, 224, 342, 449
Cfr13I	GGNCC	5 cut(s)	49, 88, 148, 301, 336
CseI	GACGC	1 cut(s)	241
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	9 cut(s)	112, 149, 198, 240, 286, 338, 346, 449, 502
CviKI_1	RGCY	9 cut(s)	112, 149, 198, 240, 286, 338, 346, 449, 502
DdeI	CTNAG	2 cut(s)	287, 398
DinI	GGCGCC	2 cut(s)	217, 454
DpnI	GATC	6 cut(s)	24, 81, 232, 259, 293, 356
DpnII	GATC	6 cut(s)	22, 79, 230, 257, 291, 354
EaeI	YGGCCR	1 cut(s)	447
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
EciI	GGCGGA	1 cut(s)	243
Eco47I	GGWCC	3 cut(s)	49, 88, 301
Eco57I	CTGAAG	1 cut(s)	524
EcoO109I	RGGNCCY	2 cut(s)	88, 301
EcoRII	CCWGG	2 cut(s)	84, 167
EgeI	GGCGCC	2 cut(s)	217, 454
EheI	GGCGCC	2 cut(s)	217, 454
Esp3I	CGTCTC	1 cut(s)	250
FaeI	CATG	1 cut(s)	16
FaiI	YATR	4 cut(s)	14, 369, 377, 523
FaqI	GGGAC	2 cut(s)	35, 74
FatI	CATG	1 cut(s)	12
FauI	CCCGC	5 cut(s)	65, 158, 364, 377, 419
Fnu4HI	GCNGC	5 cut(s)	154, 163, 199, 441, 489
FokI	GGATG	1 cut(s)	422
Fsp4HI	GCNGC	5 cut(s)	154, 163, 199, 441, 489
GlaI	GCGC	4 cut(s)	161, 217, 396, 454
GluI	GCNGC	5 cut(s)	154, 163, 199, 441, 489
GsuI	CTGGAG	1 cut(s)	68
HaeII	RGCGCY	4 cut(s)	163, 219, 398, 456
HaeIII	GGCC	4 cut(s)	149, 240, 338, 449
HgaI	GACGC	1 cut(s)	241
HhaI	GCGC	4 cut(s)	162, 218, 397, 455
Hin1I	GRCGYC	3 cut(s)	216, 252, 453
Hin1II	CATG	1 cut(s)	16
Hin6I	GCGC	4 cut(s)	160, 216, 395, 453
HinP1I	GCGC	4 cut(s)	160, 216, 395, 453
HinfI	GANTC	2 cut(s)	178, 266
HphI	GGTGA	2 cut(s)	175, 442
Hpy188I	TCNGA	4 cut(s)	22, 43, 257, 476
Hpy188III	TCNNGA	3 cut(s)	26, 52, 289
Hpy99I	CGWCG	4 cut(s)	143, 224, 239, 316
HpyAV	CCTTC	1 cut(s)	196
HpyCH4IV	ACGT	1 cut(s)	513
HpyCH4V	TGCA	1 cut(s)	201
HpyF10VI	GCNNNNNNNGC	6 cut(s)	159, 162, 171, 446, 488, 514
HpyF3I	CTNAG	2 cut(s)	287, 398
HpySE526I	ACGT	1 cut(s)	513
Hsp92I	GRCGYC	3 cut(s)	216, 252, 453
Hsp92II	CATG	1 cut(s)	16
HspAI	GCGC	4 cut(s)	160, 216, 395, 453
KasI	GGCGCC	2 cut(s)	215, 452
KroI	GCCGGC	3 cut(s)	212, 224, 449
KroNI	GCCGGC	3 cut(s)	214, 226, 451
Kzo9I	GATC	6 cut(s)	22, 79, 230, 257, 291, 354
LmnI	GCTCC	2 cut(s)	117, 170
Lsp1109I	GCAGC	1 cut(s)	185
MaeII	ACGT	1 cut(s)	513
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	6 cut(s)	24, 81, 232, 259, 293, 356
MbiI	CCGCTC	2 cut(s)	165, 384
MboI	GATC	6 cut(s)	22, 79, 230, 257, 291, 354
MboII	GAAGA	1 cut(s)	127
MflI	RGATCY	2 cut(s)	79, 230
MluCI	AATT	1 cut(s)	93
Mly113I	GGCGCC	2 cut(s)	216, 453
MmeI	TCCRAC	3 cut(s)	66, 439, 454
MreI	CGCCGGCG	2 cut(s)	212, 224
MroNI	GCCGGC	3 cut(s)	212, 224, 449
MspR9I	CCNGG	5 cut(s)	47, 86, 125, 169, 299
MvaI	CCWGG	2 cut(s)	86, 169
MwoI	GCNNNNNNNGC	6 cut(s)	159, 162, 171, 446, 488, 514
NaeI	GCCGGC	3 cut(s)	214, 226, 451
NarI	GGCGCC	2 cut(s)	216, 453
NciI	CCSGG	3 cut(s)	47, 125, 299
NdeII	GATC	6 cut(s)	22, 79, 230, 257, 291, 354
NgoMIV	GCCGGC	3 cut(s)	212, 224, 449
NlaIII	CATG	1 cut(s)	16
NlaIV	GGNNCC	6 cut(s)	51, 90, 217, 232, 302, 454
NmeAIII	GCCGAG	1 cut(s)	327
NmuCI	GTSAC	1 cut(s)	317
NspV	TTCGAA	1 cut(s)	264
PcsI	WCGNNNNNNNCGW	3 cut(s)	216, 249, 270
PdiI	GCCGGC	3 cut(s)	214, 226, 451
PfeI	GAWTC	2 cut(s)	178, 266
PflFI	GACNNNGTC	1 cut(s)	47
PkrI	GCNGC	5 cut(s)	155, 164, 200, 442, 490
Ple19I	CGATCG	1 cut(s)	260
PluTI	GGCGCC	2 cut(s)	219, 456
Ppu21I	YACGTR	1 cut(s)	514
PpuMI	RGGWCCY	2 cut(s)	88, 301
Psp5II	RGGWCCY	2 cut(s)	88, 301
Psp6I	CCWGG	2 cut(s)	84, 167
PspGI	CCWGG	2 cut(s)	84, 167
PspN4I	GGNNCC	6 cut(s)	51, 90, 217, 232, 302, 454
PspPI	GGNCC	5 cut(s)	49, 88, 148, 301, 336
PspPPI	RGGWCCY	2 cut(s)	88, 301
PstNI	CAGNNNCTG	2 cut(s)	397, 502
PsuI	RGATCY	2 cut(s)	79, 230
PsyI	GACNNNGTC	1 cut(s)	47
PvuI	CGATCG	1 cut(s)	260
SatI	GCNGC	5 cut(s)	154, 163, 199, 441, 489
Sau3AI	GATC	6 cut(s)	22, 79, 230, 257, 291, 354
Sau96I	GGNCC	5 cut(s)	49, 88, 148, 301, 336
ScrFI	CCNGG	5 cut(s)	47, 86, 125, 169, 299
SfoI	GGCGCC	2 cut(s)	217, 454
SfuI	TTCGAA	1 cut(s)	264
SgrAI	CRCCGGYG	2 cut(s)	212, 224
SinI	GGWCC	3 cut(s)	49, 88, 301
Sse9I	AATT	1 cut(s)	93
SspDI	GGCGCC	2 cut(s)	215, 452
StyD4I	CCNGG	5 cut(s)	45, 84, 123, 167, 297
TaiI	ACGT	1 cut(s)	516
TaqI	TCGA	2 cut(s)	141, 264
TasI	AATT	1 cut(s)	93
TauI	GCSGC	4 cut(s)	156, 165, 443, 491
TfiI	GAWTC	2 cut(s)	178, 266
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	1 cut(s)	198
Tsp45I	GTSAC	1 cut(s)	317
TspGWI	ACGGA	2 cut(s)	223, 422
Tth111I	GACNNNGTC	1 cut(s)	47
VpaK11BI	GGWCC	3 cut(s)	49, 88, 301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.