Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0009876

Physical Location & Seq

Genomic Coordinates Reverse (-)

13005468 .. 13005662

Gene Structure 195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1136500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGGAGAGTGGTATTCAGGCTGTCAGAGACACTGACGATGTTTGGAATAGCGTTGCGGCTGGACTGGGAACCGGTGCGATTTACCAAGCTGCAAAGGGCGTGAGGTCGGCTGCGGTGGCTGGAGCTATTGGAGGAGTCTTGGTTGGCGTGGTAGTCACGTCGAAGCAGGCGGCCAAGCGATATGTGCCAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098573 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko04212 map04212

Pfam Domains

Protein Families

Tim17

Protein Analysis

65

Amino Acids

6.37

Weight (kDa)

9.4

Isoelectric Point (pI)

21.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	1 - 47	3.6e-11	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0009876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17530 AT1G17530 AT1G72750
fragaria_vesca	FvH4_6g34150 FvH4_6g34150 FvH4_6g34150
malus_domestica	MD08G1136500.v1.1 MD17G1172500.v1.1
prunus_persica	Prupe.3G045100_v2.0.a1
pyrus_communis	pycom09g10530 pycom17g17040
rosa_chinensis	RchiOBHm_Chr2g0144461
rosa_laevigata	RLG00000020083
rosa_multiflora	Rmu_sc0005789.1_g000013 Rmu_sc0007240.1_g000003
rosa_rugosa	Rorug02G0386900
rosa_samantha	Rh2AG439100 Rh2BG449400 Rh2CG426200 Rh2DG459200
rosa_wichuraiana	Rw2G035930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	56, 113, 170
AcoI	YGGCCR	1 cut(s)	171
AgeI	ACCGGT	1 cut(s)	71
AjiI	CACGTC	1 cut(s)	159
AluBI	AGCT	2 cut(s)	89, 125
AluI	AGCT	2 cut(s)	89, 125
Alw26I	GTCTC	1 cut(s)	21
AoxI	GGCC	1 cut(s)	171
ApeKI	GCWGC	2 cut(s)	89, 110
AsiGI	ACCGGT	1 cut(s)	71
BbvI	GCAGC	2 cut(s)	76, 97
BcoDI	GTCTC	1 cut(s)	21
BisI	GCNGC	4 cut(s)	57, 90, 111, 171
BlsI	GCNGC	4 cut(s)	58, 91, 112, 172
BmgBI	CACGTC	1 cut(s)	159
BmiI	GGNNCC	1 cut(s)	70
BmrI	ACTGGG	1 cut(s)	74
BmuI	ACTGGG	1 cut(s)	74
BpmI	CTGGAG	1 cut(s)	141
BsaWI	WCCGGW	1 cut(s)	71
BsaXI	ACNNNNNCTCC	2 cut(s)	126, 156
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	69
BseRI	GAGGAG	1 cut(s)	147
BseXI	GCAGC	2 cut(s)	76, 97
BshFI	GGCC	1 cut(s)	173
BshTI	ACCGGT	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	72
BsmAI	GTCTC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	173
BspACI	CCGC	3 cut(s)	56, 113, 170
BspANI	GGCC	1 cut(s)	173
BspLI	GGNNCC	1 cut(s)	70
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	1 cut(s)	69
BssAI	RCCGGY	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	168
BstMAI	GTCTC	1 cut(s)	21
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 184
BstV1I	GCAGC	2 cut(s)	76, 97
BsuRI	GGCC	1 cut(s)	173
BtrI	CACGTC	1 cut(s)	159
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	1 cut(s)	168
Cfr10I	RCCGGY	1 cut(s)	71
CspAI	ACCGGT	1 cut(s)	71
CviJI	RGCY	7 cut(s)	20, 59, 89, 110, 119, 125, 173
CviKI_1	RGCY	7 cut(s)	20, 59, 89, 110, 119, 125, 173
EaeI	YGGCCR	1 cut(s)	171
FaiI	YATR	2 cut(s)	183, 193
Fnu4HI	GCNGC	4 cut(s)	57, 90, 111, 171
Fsp4HI	GCNGC	4 cut(s)	57, 90, 111, 171
GluI	GCNGC	4 cut(s)	57, 90, 111, 171
GsuI	CTGGAG	1 cut(s)	141
HaeIII	GGCC	1 cut(s)	173
HapII	CCGG	1 cut(s)	72
HinfI	GANTC	1 cut(s)	135
HpaII	CCGG	1 cut(s)	72
Hpy188I	TCNGA	1 cut(s)	26
Hpy99I	CGWCG	1 cut(s)	163
HpyCH4IV	ACGT	1 cut(s)	158
HpyCH4V	TGCA	1 cut(s)	92
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 184
HpySE526I	ACGT	1 cut(s)	158
LmnI	GCTCC	1 cut(s)	122
LpnPI	CCDG	6 cut(s)	2, 45, 50, 85, 105, 152
Lsp1109I	GCAGC	2 cut(s)	76, 97
MaeII	ACGT	1 cut(s)	158
MaeIII	GTNAC	1 cut(s)	154
MlyI	GAGTC	1 cut(s)	144
MnlI	CCTC	2 cut(s)	96, 125
MspI	CCGG	1 cut(s)	72
MwoI	GCNNNNNNNGC	2 cut(s)	116, 184
NlaIV	GGNNCC	1 cut(s)	70
NmuCI	GTSAC	1 cut(s)	154
PinAI	ACCGGT	1 cut(s)	71
PkrI	GCNGC	4 cut(s)	58, 91, 112, 172
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	70
SatI	GCNGC	4 cut(s)	57, 90, 111, 171
SchI	GAGTC	1 cut(s)	144
SetI	ASST	4 cut(s)	91, 107, 127, 161
SsiI	CCGC	3 cut(s)	56, 113, 170
TaiI	ACGT	1 cut(s)	161
TaqI	TCGA	1 cut(s)	161
TauI	GCSGC	2 cut(s)	59, 173
TscAI	CASTG	1 cut(s)	37
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	2 cut(s)	89, 110
Tsp45I	GTSAC	1 cut(s)	154
TspRI	CASTG	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.