Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010988

Physical Location & Seq

Genomic Coordinates Reverse (-)

6154264 .. 6155804

Gene Structure 1541 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G17890.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCGGACAACACAGGATCCGAGATGAAATCAGGTTCGTTTATGTTAGAGAAATCCGCCAAGATCTTTGTCGCTGGACATAGGGGATTGGTTGGATCTGCCATTGTCCGCAAGCTCCAGGATCAGGGTTTCACCAATTTGGTCCTTCGAACCCATTCAGAGCTTGATCTCACTAGCCAATCAGATGTTGAATCTTTCTTTGCTACAGAGAAACCAGTTTATGTCATCCTAGCTGCTGCTAAAGTCGGTGGGATTCATGCTAACAACACATACCCAGCTGATTTCATTGGGGTCAATCTCCAAATCCAGACCAATGTGATCCACTCTGCTTATACACACGGTGTGAAGAAACTCCTCTTCCTTGGTTCATCTTGCATTTACCCCAAATTTGCTCCTCAGCCGATTCCCGAATCTGCGCTTCTTACCGGTCCGCTCGAACCGACAAACGAATGGTATGCGATCGCCAAGATCGCGGGTATTAAGATGTGTCAAGCTTACCGGCTTCAGCATCAGTGGGATGCTATCTCCGGTATGCCCACGAATCTGTATGGTCAGAATGATAATTTCCACCCGGAGAATTCCCATGTGCTGCCTGCTCTCATGAGGAGGTTTCATGAAGCCAAAGCCAATAATGCTGACGAAGTTGTGGTTTGGGGAAGTGGAAGCCCGTTGAGGGAGTTTTTACATGTCGATGATTTGGCTGATGCTTGTGTTTTCTTGATGGATCAGTACAGCGGATTTGAGCATGTGAATGTAGGAAGTGGTGTTGAAGTGACGATCAAAGAATTGGCTGAGTTGGTGAAAGAAGTTGTTGGGTTTAAAGGAAAGCTTGTTTGGGATACCACAAAACCAGACGGGACACCAAGGAAACTGATGGATAGCTCGAAGCTTGCGTCTTTGGGATGGACACCGAAGATTTCGCTTAAAGATGGCCTCTCCCAAACTTATGAATGGTATTTGGAAAATGTTGTGCAGAAGAAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005996 GO:0006004 GO:0006005 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009987 GO:0016051 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019318 GO:0019319 GO:0019438 GO:0034641 GO:0034654 GO:0042350 GO:0042353 GO:0042354 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046364 GO:0046368 GO:0046483 GO:0050577 GO:0055086 GO:0055114 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 map00051 map00520 map01100

Pfam Domains

Protein Families

Epimerase

Protein Analysis

328

Amino Acids

36.23

Weight (kDa)

6.26

Isoelectric Point (pI)

22.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RmlD_sub_bind	PF04321	13 - 237	2.6e-07	RmlD substrate binding domain
Epimerase	PF01370	14 - 245	8.6e-65	NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd	PF16363	46 - 306	8.2e-18	GDP-mannose 4,6 dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17890 AT1G17890 AT1G17890 AT1G73250
fragaria_vesca	FvH4_4g08850 FvH4_4g08850 FvH4_4g08850
malus_domestica	MD05G1099800.v1.1 MD10G1105500.v1.1
prunus_persica	Prupe.1G100900_v2.0.a1
pyrus_communis	pycom05g09860 pycom10g09090
rosa_chinensis	RchiOBHm_Chr4g0405311
rosa_laevigata	RLG00000008852
rosa_multiflora	Rmu_sc0000161.1_g000028
rosa_roxburghii	Rroxscaffold_5G00349690
rosa_rugosa	Rorug04G0057300
rosa_samantha	Rh4BG125000 Rh4CG137600
rosa_wichuraiana	Rw4G010590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	433
AccII	CGCG	1 cut(s)	473
AciI	CCGC	6 cut(s)	5, 57, 109, 431, 473, 735
AclWI	GGATC	6 cut(s)	12, 25, 103, 129, 313, 732
AcsI	RAATTY	2 cut(s)	386, 577
AcuI	CTGAAG	1 cut(s)	488
AdeI	CACNNNGTG	2 cut(s)	341, 343
AfaI	GTAC	1 cut(s)	731
AfiI	CCNNNNNNNGG	2 cut(s)	124, 673
AflIII	ACRYGT	1 cut(s)	685
AgeI	ACCGGT	1 cut(s)	425
AgsI	TTSAA	2 cut(s)	191, 770
AjnI	CCWGG	1 cut(s)	117
AjuI	GAANNNNNNNTTGG	2 cut(s)	817, 849
AluBI	AGCT	8 cut(s)	115, 163, 233, 278, 494, 829, 882, 889
AluI	AGCT	8 cut(s)	115, 163, 233, 278, 494, 829, 882, 889
AlwI	GGATC	6 cut(s)	12, 25, 103, 129, 313, 732
AoxI	GGCC	1 cut(s)	931
ApeKI	GCWGC	3 cut(s)	233, 236, 589
ApoI	RAATTY	2 cut(s)	386, 577
ArsI	GACNNNNNNTTYG	2 cut(s)	878, 910
AsiGI	ACCGGT	1 cut(s)	425
AsiSI	GCGATCGC	1 cut(s)	462
Asp700I	GAANNNNTTC	1 cut(s)	154
AspLEI	GCGC	1 cut(s)	418
AspS9I	GGNCC	2 cut(s)	142, 428
AsuC2I	CCSGG	1 cut(s)	572
AsuHPI	GGTGA	2 cut(s)	124, 811
AsuII	TTCGAA	1 cut(s)	148
AvaII	GGWCC	2 cut(s)	142, 428
BamHI	GGATCC	1 cut(s)	17
BbvCI	CCTCAGC	1 cut(s)	396
BbvI	GCAGC	3 cut(s)	220, 223, 576
BccI	CCATC	4 cut(s)	715, 868, 897, 923
BcgI	CGANNNNNNTGC	2 cut(s)	437, 471
BciT130I	CCWGG	1 cut(s)	119
BciVI	GTATCC	1 cut(s)	832
BcnI	CCSGG	1 cut(s)	572
BfaI	CTAG	2 cut(s)	174, 230
BfmI	CTRYAG	1 cut(s)	204
BfuI	GTATCC	1 cut(s)	832
BglII	AGATCT	1 cut(s)	63
BisI	GCNGC	3 cut(s)	234, 237, 590
BlsI	GCNGC	3 cut(s)	235, 238, 591
Bme1390I	CCNGG	2 cut(s)	119, 572
Bme18I	GGWCC	2 cut(s)	142, 428
BmgT120I	GGNCC	2 cut(s)	142, 428
BmiI	GGNNCC	1 cut(s)	19
BmrFI	CCNGG	2 cut(s)	119, 572
BmsI	GCATC	3 cut(s)	508, 517, 694
BpmI	CTGGAG	1 cut(s)	101
Bpu10I	CCTNAGC	1 cut(s)	396
Bpu14I	TTCGAA	1 cut(s)	148
BpuMI	CCSGG	1 cut(s)	572
BsaJI	CCNNGG	2 cut(s)	361, 863
BsaWI	WCCGGW	2 cut(s)	425, 527
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 673
Bse118I	RCCGGY	2 cut(s)	425, 498
Bse1I	ACTGG	1 cut(s)	215
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	2 cut(s)	361, 863
BseGI	GGATG	3 cut(s)	225, 523, 908
BseLI	CCNNNNNNNGG	2 cut(s)	124, 673
BseMII	CTCAG	2 cut(s)	410, 783
BseNI	ACTGG	1 cut(s)	215
BseRI	GAGGAG	3 cut(s)	344, 384, 619
BseXI	GCAGC	3 cut(s)	220, 223, 576
BseYI	CCCAGC	1 cut(s)	274
Bsh1236I	CGCG	1 cut(s)	473
Bsh1285I	CGRYCG	1 cut(s)	462
BshFI	GGCC	1 cut(s)	933
BshTI	ACCGGT	1 cut(s)	425
BsiEI	CGRYCG	1 cut(s)	462
BsiSI	CCGG	4 cut(s)	426, 499, 528, 572
BslFI	GGGAC	1 cut(s)	871
BslI	CCNNNNNNNGG	2 cut(s)	124, 673
BsmFI	GGGAC	1 cut(s)	871
BsnI	GGCC	1 cut(s)	933
Bsp119I	TTCGAA	1 cut(s)	148
BspACI	CCGC	6 cut(s)	5, 57, 109, 431, 473, 735
BspANI	GGCC	1 cut(s)	933
BspCNI	CTCAG	2 cut(s)	409, 784
BspFNI	CGCG	1 cut(s)	473
BspHI	TCATGA	2 cut(s)	600, 613
BspLI	GGNNCC	1 cut(s)	19
BspPI	GGATC	6 cut(s)	12, 25, 103, 129, 313, 732
BspT104I	TTCGAA	1 cut(s)	148
BsrBI	CCGCTC	1 cut(s)	433
BsrFI	RCCGGY	2 cut(s)	425, 498
BsrI	ACTGG	1 cut(s)	215
BssAI	RCCGGY	2 cut(s)	425, 498
BssECI	CCNNGG	2 cut(s)	361, 863
BssT1I	CCWWGG	2 cut(s)	361, 863
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	1 cut(s)	341
Bst6I	CTCTTC	1 cut(s)	362
BstBI	TTCGAA	1 cut(s)	148
BstC8I	GCNNGC	3 cut(s)	113, 594, 891
BstDEI	CTNAG	2 cut(s)	396, 792
BstF5I	GGATG	3 cut(s)	225, 523, 908
BstFNI	CGCG	1 cut(s)	473
BstHHI	GCGC	1 cut(s)	418
BstMCI	CGRYCG	1 cut(s)	462
BstMWI	GCNNNNNNNGC	3 cut(s)	470, 632, 979
BstNI	CCWGG	1 cut(s)	119
BstNSI	RCATGY	2 cut(s)	689, 749
BstSCI	CCNGG	2 cut(s)	117, 570
BstSFI	CTRYAG	1 cut(s)	204
BstUI	CGCG	1 cut(s)	473
BstV1I	GCAGC	3 cut(s)	220, 223, 576
BstX2I	RGATCY	3 cut(s)	17, 63, 95
BstYI	RGATCY	3 cut(s)	17, 63, 95
BsuI	GTATCC	1 cut(s)	832
BsuRI	GGCC	1 cut(s)	933
BtsCI	GGATG	3 cut(s)	225, 523, 908
BtsIMutI	CAGTG	1 cut(s)	518
Cac8I	GCNNGC	3 cut(s)	113, 594, 891
CciI	TCATGA	2 cut(s)	600, 613
CfoI	GCGC	1 cut(s)	418
Cfr10I	RCCGGY	2 cut(s)	425, 498
Cfr13I	GGNCC	2 cut(s)	142, 428
CpoI	CGGWCCG	1 cut(s)	428
CseI	GACGC	1 cut(s)	882
Csp6I	GTAC	1 cut(s)	730
CspAI	ACCGGT	1 cut(s)	425
CspI	CGGWCCG	1 cut(s)	428
CviAII	CATG	6 cut(s)	257, 584, 601, 614, 686, 746
CviQI	GTAC	1 cut(s)	730
DdeI	CTNAG	2 cut(s)	396, 792
DraI	TTTAAA	1 cut(s)	820
DraIII	CACNNNGTG	2 cut(s)	341, 343
Eam1104I	CTCTTC	1 cut(s)	362
EarI	CTCTTC	1 cut(s)	362
EciI	GGCGGA	2 cut(s)	20, 46
Eco130I	CCWWGG	2 cut(s)	361, 863
Eco47I	GGWCC	2 cut(s)	142, 428
Eco57I	CTGAAG	1 cut(s)	488
EcoRI	GAATTC	1 cut(s)	577
EcoRII	CCWGG	1 cut(s)	117
EcoT14I	CCWWGG	2 cut(s)	361, 863
ErhI	CCWWGG	2 cut(s)	361, 863
FaeI	CATG	6 cut(s)	260, 587, 604, 617, 689, 749
FalI	AAGNNNNNCTT	2 cut(s)	813, 845
FaqI	GGGAC	1 cut(s)	871
FatI	CATG	6 cut(s)	256, 583, 600, 613, 685, 745
FauI	CCCGC	1 cut(s)	466
Fnu4HI	GCNGC	3 cut(s)	234, 237, 590
FokI	GGATG	3 cut(s)	212, 530, 915
Fsp4HI	GCNGC	3 cut(s)	234, 237, 590
FspBI	CTAG	2 cut(s)	174, 230
GlaI	GCGC	1 cut(s)	417
GluI	GCNGC	3 cut(s)	234, 237, 590
GsaI	CCCAGC	1 cut(s)	278
GsuI	CTGGAG	1 cut(s)	101
HaeIII	GGCC	1 cut(s)	933
HapII	CCGG	4 cut(s)	426, 499, 528, 572
HgaI	GACGC	1 cut(s)	882
HhaI	GCGC	1 cut(s)	418
Hin1II	CATG	6 cut(s)	260, 587, 604, 617, 689, 749
Hin6I	GCGC	1 cut(s)	416
HinP1I	GCGC	1 cut(s)	416
HindIII	AAGCTT	3 cut(s)	492, 827, 887
HinfI	GANTC	5 cut(s)	191, 253, 403, 410, 541
HpaII	CCGG	4 cut(s)	426, 499, 528, 572
HphI	GGTGA	2 cut(s)	124, 811
Hpy188I	TCNGA	4 cut(s)	22, 160, 184, 555
Hpy188III	TCNNGA	5 cut(s)	307, 407, 601, 614, 718
HpyAV	CCTTC	1 cut(s)	155
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4V	TGCA	2 cut(s)	375, 973
HpyF10VI	GCNNNNNNNGC	3 cut(s)	470, 632, 979
HpyF3I	CTNAG	2 cut(s)	396, 792
Hsp92II	CATG	6 cut(s)	260, 587, 604, 617, 689, 749
HspAI	GCGC	1 cut(s)	416
LmnI	GCTCC	2 cut(s)	120, 397
Lsp1109I	GCAGC	3 cut(s)	220, 223, 576
LweI	GCATC	3 cut(s)	508, 517, 694
MaeI	CTAG	2 cut(s)	174, 230
MaeIII	GTNAC	1 cut(s)	772
MbiI	CCGCTC	1 cut(s)	433
MboII	GAAGA	3 cut(s)	349, 358, 925
MflI	RGATCY	3 cut(s)	17, 63, 95
MluCI	AATT	5 cut(s)	136, 386, 562, 577, 785
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	6 cut(s)	365, 405, 597, 600, 666, 944
MroXI	GAANNNNTTC	1 cut(s)	154
MseI	TTAA	3 cut(s)	480, 819, 924
MslI	CAYNNNNRTG	2 cut(s)	690, 750
MspA1I	CMGCKG	2 cut(s)	278, 735
MspI	CCGG	4 cut(s)	426, 499, 528, 572
MspR9I	CCNGG	2 cut(s)	119, 572
MvaI	CCWGG	1 cut(s)	119
MvnI	CGCG	1 cut(s)	473
MwoI	GCNNNNNNNGC	3 cut(s)	470, 632, 979
NciI	CCSGG	1 cut(s)	572
NlaIII	CATG	6 cut(s)	260, 587, 604, 617, 689, 749
NlaIV	GGNNCC	1 cut(s)	19
NmuCI	GTSAC	1 cut(s)	772
NspI	RCATGY	2 cut(s)	689, 749
NspV	TTCGAA	1 cut(s)	148
PagI	TCATGA	2 cut(s)	600, 613
PciI	ACATGT	1 cut(s)	685
PcsI	WCGNNNNNNNCGW	1 cut(s)	890
PdmI	GAANNNNTTC	1 cut(s)	154
PfeI	GAWTC	5 cut(s)	191, 253, 403, 410, 541
PfoI	TCCNGGA	1 cut(s)	117
PinAI	ACCGGT	1 cut(s)	425
PkrI	GCNGC	3 cut(s)	235, 238, 591
Ple19I	CGATCG	1 cut(s)	462
PscI	ACATGT	1 cut(s)	685
Psp6I	CCWGG	1 cut(s)	117
PspFI	CCCAGC	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	19
PspPI	GGNCC	2 cut(s)	142, 428
PsuI	RGATCY	3 cut(s)	17, 63, 95
PvuI	CGATCG	1 cut(s)	462
PvuII	CAGCTG	1 cut(s)	278
RgaI	GCGATCGC	1 cut(s)	462
RsaI	GTAC	1 cut(s)	731
RsaNI	GTAC	1 cut(s)	730
RseI	CAYNNNNRTG	2 cut(s)	690, 750
Rsr2I	CGGWCCG	1 cut(s)	428
RsrII	CGGWCCG	1 cut(s)	428
SaqAI	TTAA	3 cut(s)	480, 819, 924
SatI	GCNGC	3 cut(s)	234, 237, 590
Sau96I	GGNCC	2 cut(s)	142, 428
ScrFI	CCNGG	2 cut(s)	119, 572
SfaAI	GCGATCGC	1 cut(s)	462
SfaNI	GCATC	3 cut(s)	508, 517, 694
SfcI	CTRYAG	1 cut(s)	204
SfuI	TTCGAA	1 cut(s)	148
SgfI	GCGATCGC	1 cut(s)	462
SinI	GGWCC	2 cut(s)	142, 428
SmiMI	CAYNNNNRTG	2 cut(s)	690, 750
Sse9I	AATT	5 cut(s)	136, 386, 562, 577, 785
SsiI	CCGC	6 cut(s)	5, 57, 109, 431, 473, 735
SspMI	CTAG	2 cut(s)	174, 230
StyD4I	CCNGG	2 cut(s)	117, 570
StyI	CCWWGG	2 cut(s)	361, 863
TaaI	ACNGT	1 cut(s)	341
TaqI	TCGA	4 cut(s)	148, 435, 690, 884
TasI	AATT	5 cut(s)	136, 386, 562, 577, 785
TatI	WGTACW	1 cut(s)	729
TfiI	GAWTC	5 cut(s)	191, 253, 403, 410, 541
Tru1I	TTAA	3 cut(s)	480, 819, 924
Tru9I	TTAA	3 cut(s)	480, 819, 924
TscAI	CASTG	1 cut(s)	518
TseFI	GTSAC	1 cut(s)	772
TseI	GCWGC	3 cut(s)	233, 236, 589
Tsp45I	GTSAC	1 cut(s)	772
TspDTI	ATGAA	7 cut(s)	41, 245, 274, 357, 602, 630, 963
TspRI	CASTG	1 cut(s)	518
VpaK11BI	GGWCC	2 cut(s)	142, 428
XapI	RAATTY	2 cut(s)	386, 577
XceI	RCATGY	2 cut(s)	689, 749
XmnI	GAANNNNTTC	1 cut(s)	154
XspI	CTAG	2 cut(s)	174, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.