pycom10g09090

GDP-L-fucose synthase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
12000597 .. 12001729
1133 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g09090.1

Sequence Viewer

Length: 975 bp
ATGAGTGGCGCTAATAAGAATGCCGCTTCGCCTTCCTTCCTCTCCGACAAATCGGCGAAGGTTTTCGTAGCCGGCCACCGCGGCCTCGTCGGCTCCGCCATCGTCCGCAAGCTCCAAGCCCTAGGCTTCACCAACCTCGTCCTCCGCACCCACGCCGAGCTCGACCTCACTCGCCAGGCCGACGTCGAGTCCTTTTTCGCCGCCGAGAAACCTCAATTCGTGATCCTTGCCGCCGCTAAAGTCGGCGGCATTCACGCCAACAACACGTACCCGGCGGATTTCATCGCCGTCAATCTCCAGATCCAGACCAATGTCATAGACGCCGCCTACCGATTTGGAGTCAAGAAGCTCTTGTTCCTTGGCTCCTCCTGCATTTACCCCAAATTCGCTCCTCAGCCCATCCCGGAGAACGCATTGCTGACGGGACCACTGGAGCCTACCAACGAGTGGTACGCCATTGCCAAGATCGCCGGGATCAAGATGTGCCAGGCGTATCGGATTCAGTACAGTTGGGATGCAATTTCTGGGATGCCCACCAATTTGTATGGGCCGCATGACAACTTTCACCCTGAAAATTCACATGTGTTGCCGGCATTGATGAGACGGTTTCACGAGGCAAAGGTGAAGGGGGCGGAGGAGGTGGTGGTGTGGGGGACTGGAAGCCCCCTGAGGGAGTTTTTGCACGTCGACGATTTGGCAGATGGAGTGGTGTTCATGATGGACAGTTATAGTGGGTTGGAGCATGTCAATGTGGGGAGTGGCAAGGAAGTGACAATTAAGGAGTTGGCTGAGCTTGTCAAGGAGGTTGTTGGGTTCGAGGGCCGGCTTGTTTGGGACTCTACCAAGCCCGATGGAACTCCGAGGAAGCTCATGGATAGCTCAAAGCTTGCAGGGTTGGGGTGGACACCGAAGATCTCGCTGAAAGACGGGCTTGTTGATACTTATAGCTGGTACTTAGAGAATGTCAAGCAATAA

Protein Analysis

325

Amino Acids

35.53

Weight (kDa)

6.76

Isoelectric Point (pI)

20.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RmlD_sub_bind PF04321 20 - 136 1.1e-07 RmlD substrate binding domain
Epimerase PF01370 21 - 252 4.2e-65 NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd PF16363 53 - 311 4.5e-19 GDP-mannose 4,6 dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010988)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 186
AccB7I CCANNNNNTGG 1 cut(s) 447
AccI GTMKAC 1 cut(s) 687
AccII CGCG 1 cut(s) 81
AclWI GGATC 3 cut(s) 217, 295, 482
AcoI YGGCCR 1 cut(s) 73
AcsI RAATTY 2 cut(s) 383, 574
AcyI GRCGYC 2 cut(s) 183, 321
AfaI GTAC 4 cut(s) 269, 452, 506, 953
AfiI CCNNNNNNNGG 2 cut(s) 447, 670
AflIII ACRYGT 2 cut(s) 264, 580
AhdI GACNNNNNGTC 1 cut(s) 187
AjiI CACGTC 1 cut(s) 685
AjnI CCWGG 2 cut(s) 174, 486
AluBI AGCT 8 cut(s) 112, 160, 349, 793, 868, 879, 886, 948
AluI AGCT 8 cut(s) 112, 160, 349, 793, 868, 879, 886, 948
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 1 cut(s) 595
AlwI GGATC 3 cut(s) 217, 295, 482
AoxI GGCC 5 cut(s) 73, 82, 177, 548, 820
ApoI RAATTY 2 cut(s) 383, 574
Asp700I GAANNNNTTC 1 cut(s) 62
AspA2I CCTAGG 1 cut(s) 121
AspLEI GCGC 1 cut(s) 11
AspS9I GGNCC 3 cut(s) 425, 548, 820
AsuC2I CCSGG 3 cut(s) 272, 404, 472
AsuHPI GGTGA 3 cut(s) 121, 557, 634
AvaII GGWCC 1 cut(s) 425
AvrII CCTAGG 1 cut(s) 121
AxyI CCTNAGG 1 cut(s) 668
BanII GRGCYC 1 cut(s) 162
BauI CACGAG 1 cut(s) 611
Bbv12I GWGCWC 1 cut(s) 162
BbvCI CCTCAGC 1 cut(s) 393
BccI CCATC 5 cut(s) 107, 407, 695, 712, 845
BceAI ACGGC 1 cut(s) 272
BciT130I CCWGG 2 cut(s) 176, 488
BcnI CCSGG 3 cut(s) 272, 404, 472
BcoDI GTCTC 1 cut(s) 595
BfaI CTAG 1 cut(s) 122
BfoI RGCGCY 1 cut(s) 12
BglI GCCNNNNNGGC 2 cut(s) 81, 90
BglII AGATCT 1 cut(s) 912
BisI GCNGC 8 cut(s) 24, 82, 201, 231, 234, 247, 324, 551
BlnI CCTAGG 1 cut(s) 121
BlpI GCTNAGC 1 cut(s) 789
BlsI GCNGC 8 cut(s) 25, 83, 202, 232, 235, 248, 325, 552
Bme1390I CCNGG 5 cut(s) 176, 272, 404, 472, 488
Bme18I GGWCC 1 cut(s) 425
BmeRI GACNNNNNGTC 1 cut(s) 187
BmgBI CACGTC 1 cut(s) 685
BmgT120I GGNCC 3 cut(s) 425, 548, 820
BmiI GGNNCC 4 cut(s) 94, 364, 426, 435
BmrFI CCNGG 5 cut(s) 176, 272, 404, 472, 488
BmsI GCATC 2 cut(s) 505, 519
BoxI GACNNNNGTC 1 cut(s) 311
BpmI CTGGAG 2 cut(s) 281, 452
Bpu10I CCTNAGC 1 cut(s) 393
Bpu1102I GCTNAGC 1 cut(s) 789
BpuMI CCSGG 3 cut(s) 272, 404, 472
BsaAI YACGTR 1 cut(s) 267
BsaHI GRCGYC 2 cut(s) 183, 321
BsaJI CCNNGG 4 cut(s) 79, 121, 358, 860
Bsc4I CCNNNNNNNGG 2 cut(s) 447, 670
Bse118I RCCGGY 3 cut(s) 71, 589, 822
Bse1I ACTGG 2 cut(s) 435, 661
Bse21I CCTNAGG 1 cut(s) 668
Bse3DI GCAATG 2 cut(s) 413, 456
BseBI CCWGG 2 cut(s) 176, 488
BseDI CCNNGG 4 cut(s) 79, 121, 358, 860
BseGI GGATG 3 cut(s) 399, 520, 534
BseLI CCNNNNNNNGG 2 cut(s) 447, 670
BseMI GCAATG 2 cut(s) 413, 456
BseMII CTCAG 3 cut(s) 407, 659, 780
BseNI ACTGG 2 cut(s) 435, 661
BseRI GAGGAG 3 cut(s) 355, 381, 650
Bsh1236I CGCG 1 cut(s) 81
BshFI GGCC 5 cut(s) 75, 84, 179, 550, 822
BsiHKAI GWGCWC 1 cut(s) 162
BsiSI CCGG 6 cut(s) 72, 272, 404, 471, 590, 823
BslFI GGGAC 3 cut(s) 438, 667, 848
BslI CCNNNNNNNGG 2 cut(s) 447, 670
BsmAI GTCTC 1 cut(s) 595
BsmBI CGTCTC 1 cut(s) 595
BsmFI GGGAC 3 cut(s) 438, 667, 848
BsmI GAATGC 2 cut(s) 25, 249
BsnI GGCC 5 cut(s) 75, 84, 179, 550, 822
Bsp1286I GDGCHC 1 cut(s) 162
Bsp143I GATC 5 cut(s) 222, 300, 465, 474, 912
Bsp1720I GCTNAGC 1 cut(s) 789
BspANI GGCC 5 cut(s) 75, 84, 179, 550, 822
BspCNI CTCAG 3 cut(s) 406, 660, 781
BspFNI CGCG 1 cut(s) 81
BspHI TCATGA 1 cut(s) 714
BspLI GGNNCC 4 cut(s) 94, 364, 426, 435
BspPI GGATC 3 cut(s) 217, 295, 482
BsrDI GCAATG 2 cut(s) 413, 456
BsrFI RCCGGY 3 cut(s) 71, 589, 822
BsrI ACTGG 2 cut(s) 435, 661
BssAI RCCGGY 3 cut(s) 71, 589, 822
BssECI CCNNGG 4 cut(s) 79, 121, 358, 860
BssMI GATC 5 cut(s) 222, 300, 465, 474, 912
BssNI GRCGYC 2 cut(s) 183, 321
BssSI CACGAG 1 cut(s) 611
BssT1I CCWWGG 2 cut(s) 121, 358
Bst2BI CACGAG 1 cut(s) 611
Bst2UI CCWGG 2 cut(s) 176, 488
Bst4CI ACNGT 3 cut(s) 509, 606, 725
BstACI GRCGYC 2 cut(s) 183, 321
BstBAI YACGTR 1 cut(s) 267
BstC8I GCNNGC 5 cut(s) 73, 110, 591, 824, 888
BstDEI CTNAG 4 cut(s) 393, 668, 789, 955
BstDSI CCRYGG 1 cut(s) 79
BstF5I GGATG 3 cut(s) 399, 520, 534
BstFNI CGCG 1 cut(s) 81
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 1 cut(s) 11
BstKTI GATC 5 cut(s) 225, 303, 468, 477, 915
BstMAI GTCTC 1 cut(s) 595
BstMBI GATC 5 cut(s) 222, 300, 465, 474, 912
BstMWI GCNNNNNNNGC 4 cut(s) 81, 90, 369, 467
BstNI CCWGG 2 cut(s) 176, 488
BstNSI RCATGY 2 cut(s) 584, 746
BstPAI GACNNNNGTC 1 cut(s) 311
BstSCI CCNGG 5 cut(s) 174, 270, 402, 470, 486
BstUI CGCG 1 cut(s) 81
BstX2I RGATCY 2 cut(s) 300, 912
BstYI RGATCY 2 cut(s) 300, 912
Bsu36I CCTNAGG 1 cut(s) 668
BsuRI GGCC 5 cut(s) 75, 84, 179, 550, 822
BtgI CCRYGG 1 cut(s) 79
BtgZI GCGATG 1 cut(s) 268
BtrI CACGTC 1 cut(s) 685
BtsCI GGATG 3 cut(s) 399, 520, 534
BtsIMutI CAGTG 1 cut(s) 428
Cac8I GCNNGC 5 cut(s) 73, 110, 591, 824, 888
CciI TCATGA 1 cut(s) 714
CfoI GCGC 1 cut(s) 11
Cfr10I RCCGGY 3 cut(s) 71, 589, 822
Cfr13I GGNCC 3 cut(s) 425, 548, 820
Cfr42I CCGCGG 1 cut(s) 82
CseI GACGC 1 cut(s) 329
Csp6I GTAC 4 cut(s) 268, 451, 505, 952
CviAII CATG 5 cut(s) 554, 581, 715, 743, 871
CviQI GTAC 4 cut(s) 268, 451, 505, 952
DdeI CTNAG 4 cut(s) 393, 668, 789, 955
DpnI GATC 5 cut(s) 224, 302, 467, 476, 914
DpnII GATC 5 cut(s) 222, 300, 465, 474, 912
DriI GACNNNNNGTC 1 cut(s) 187
EaeI YGGCCR 1 cut(s) 73
Eam1105I GACNNNNNGTC 1 cut(s) 187
EciI GGCGGA 3 cut(s) 85, 290, 647
Ecl136II GAGCTC 1 cut(s) 160
Eco130I CCWWGG 2 cut(s) 121, 358
Eco24I GRGCYC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 425
Eco53kI GAGCTC 1 cut(s) 160
Eco81I CCTNAGG 1 cut(s) 668
EcoICRI GAGCTC 1 cut(s) 160
EcoRII CCWGG 2 cut(s) 174, 486
EcoT14I CCWWGG 2 cut(s) 121, 358
EcoT38I GRGCYC 1 cut(s) 162
ErhI CCWWGG 2 cut(s) 121, 358
Esp3I CGTCTC 1 cut(s) 595
FaeI CATG 5 cut(s) 557, 584, 718, 746, 874
FaiI YATR 9 cut(s) 317, 546, 555, 582, 716, 729, 744, 872, 945
FalI AAGNNNNNCTT 4 cut(s) 335, 367, 915, 947
FaqI GGGAC 3 cut(s) 438, 667, 848
FatI CATG 5 cut(s) 553, 580, 714, 742, 870
FblI GTMKAC 1 cut(s) 687
Fnu4HI GCNGC 8 cut(s) 24, 82, 201, 231, 234, 247, 324, 551
FokI GGATG 3 cut(s) 386, 527, 541
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 8 cut(s) 24, 82, 201, 231, 234, 247, 324, 551
FspBI CTAG 1 cut(s) 122
GlaI GCGC 1 cut(s) 10
GluI GCNGC 8 cut(s) 24, 82, 201, 231, 234, 247, 324, 551
GsuI CTGGAG 2 cut(s) 281, 452
HaeII RGCGCY 1 cut(s) 12
HaeIII GGCC 5 cut(s) 75, 84, 179, 550, 822
HapII CCGG 6 cut(s) 72, 272, 404, 471, 590, 823
HgaI GACGC 1 cut(s) 329
HhaI GCGC 1 cut(s) 11
Hin1I GRCGYC 2 cut(s) 183, 321
Hin1II CATG 5 cut(s) 557, 584, 718, 746, 874
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HincII GTYRAC 1 cut(s) 688
HindII GTYRAC 1 cut(s) 688
HindIII AAGCTT 1 cut(s) 884
HinfI GANTC 4 cut(s) 188, 339, 499, 836
HpaII CCGG 6 cut(s) 72, 272, 404, 471, 590, 823
HphI GGTGA 3 cut(s) 121, 557, 634
Hpy166II GTNNAC 2 cut(s) 688, 903
Hpy188I TCNGA 3 cut(s) 46, 498, 861
Hpy188III TCNNGA 7 cut(s) 220, 298, 304, 343, 478, 611, 715
Hpy8I GTNNAC 2 cut(s) 688, 903
Hpy99I CGWCG 5 cut(s) 92, 185, 188, 689, 692
HpyAV CCTTC 4 cut(s) 42, 46, 52, 619
HpyCH4III ACNGT 3 cut(s) 509, 606, 725
HpyCH4IV ACGT 3 cut(s) 183, 266, 684
HpyCH4V TGCA 4 cut(s) 372, 518, 682, 890
HpyF10VI GCNNNNNNNGC 4 cut(s) 81, 90, 369, 467
HpyF3I CTNAG 4 cut(s) 393, 668, 789, 955
HpySE526I ACGT 3 cut(s) 183, 266, 684
Hsp92I GRCGYC 2 cut(s) 183, 321
Hsp92II CATG 5 cut(s) 557, 584, 718, 746, 874
HspAI GCGC 1 cut(s) 9
KroI GCCGGC 3 cut(s) 71, 589, 822
KroNI GCCGGC 3 cut(s) 73, 591, 824
KspI CCGCGG 1 cut(s) 82
Kzo9I GATC 5 cut(s) 222, 300, 465, 474, 912
LmnI GCTCC 6 cut(s) 98, 117, 368, 394, 433, 739
LweI GCATC 2 cut(s) 505, 519
MaeI CTAG 1 cut(s) 122
MaeII ACGT 3 cut(s) 183, 266, 684
MaeIII GTNAC 1 cut(s) 769
MalI GATC 5 cut(s) 224, 302, 467, 476, 914
MboI GATC 5 cut(s) 222, 300, 465, 474, 912
MboII GAAGA 1 cut(s) 922
MflI RGATCY 2 cut(s) 300, 912
MhlI GDGCHC 1 cut(s) 162
MluCI AATT 6 cut(s) 215, 383, 519, 538, 574, 774
MlyI GAGTC 3 cut(s) 197, 348, 830
MmeI TCCRAC 2 cut(s) 69, 717
MroNI GCCGGC 3 cut(s) 71, 589, 822
MroXI GAANNNNTTC 1 cut(s) 62
MseI TTAA 1 cut(s) 777
MslI CAYNNNNRTG 1 cut(s) 747
MspA1I CMGCKG 1 cut(s) 81
MspI CCGG 6 cut(s) 72, 272, 404, 471, 590, 823
MspR9I CCNGG 5 cut(s) 176, 272, 404, 472, 488
Mva1269I GAATGC 2 cut(s) 25, 249
MvaI CCWGG 2 cut(s) 176, 488
MvnI CGCG 1 cut(s) 81
MwoI GCNNNNNNNGC 4 cut(s) 81, 90, 369, 467
NaeI GCCGGC 3 cut(s) 73, 591, 824
NciI CCSGG 3 cut(s) 272, 404, 472
NdeII GATC 5 cut(s) 222, 300, 465, 474, 912
NgoMIV GCCGGC 3 cut(s) 71, 589, 822
NlaIII CATG 5 cut(s) 557, 584, 718, 746, 874
NlaIV GGNNCC 4 cut(s) 94, 364, 426, 435
NmeAIII GCCGAG 2 cut(s) 181, 229
NmuCI GTSAC 1 cut(s) 769
NspI RCATGY 2 cut(s) 584, 746
PagI TCATGA 1 cut(s) 714
PciI ACATGT 1 cut(s) 580
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PctI GAATGC 2 cut(s) 25, 249
PdiI GCCGGC 3 cut(s) 73, 591, 824
PdmI GAANNNNTTC 1 cut(s) 62
PfeI GAWTC 1 cut(s) 499
PflMI CCANNNNNTGG 1 cut(s) 447
PfoI TCCNGGA 1 cut(s) 402
PkrI GCNGC 8 cut(s) 25, 83, 202, 232, 235, 248, 325, 552
PleI GAGTC 3 cut(s) 196, 347, 830
PpsI GAGTC 3 cut(s) 196, 347, 830
Ppu21I YACGTR 1 cut(s) 267
PscI ACATGT 1 cut(s) 580
PshAI GACNNNNGTC 1 cut(s) 311
Psp124BI GAGCTC 1 cut(s) 162
Psp6I CCWGG 2 cut(s) 174, 486
PspGI CCWGG 2 cut(s) 174, 486
PspN4I GGNNCC 4 cut(s) 94, 364, 426, 435
PspPI GGNCC 3 cut(s) 425, 548, 820
PsuI RGATCY 2 cut(s) 300, 912
RsaI GTAC 4 cut(s) 269, 452, 506, 953
RsaNI GTAC 4 cut(s) 268, 451, 505, 952
RseI CAYNNNNRTG 1 cut(s) 747
SacI GAGCTC 1 cut(s) 162
SacII CCGCGG 1 cut(s) 82
SalI GTCGAC 1 cut(s) 686
SaqAI TTAA 1 cut(s) 777
SatI GCNGC 8 cut(s) 24, 82, 201, 231, 234, 247, 324, 551
Sau3AI GATC 5 cut(s) 222, 300, 465, 474, 912
Sau96I GGNCC 3 cut(s) 425, 548, 820
SchI GAGTC 3 cut(s) 197, 348, 830
ScrFI CCNGG 5 cut(s) 176, 272, 404, 472, 488
SduI GDGCHC 1 cut(s) 162
SfaNI GCATC 2 cut(s) 505, 519
SfiI GGCCNNNNNGGCC 1 cut(s) 81
Sfr303I CCGCGG 1 cut(s) 82
SgrBI CCGCGG 1 cut(s) 82
SgrDI CGTCGACG 1 cut(s) 686
SinI GGWCC 1 cut(s) 425
SmiMI CAYNNNNRTG 1 cut(s) 747
Sse9I AATT 6 cut(s) 215, 383, 519, 538, 574, 774
SspMI CTAG 1 cut(s) 122
SstI GAGCTC 1 cut(s) 162
StyD4I CCNGG 5 cut(s) 174, 270, 402, 470, 486
StyI CCWWGG 2 cut(s) 121, 358
TaaI ACNGT 3 cut(s) 509, 606, 725
TaiI ACGT 3 cut(s) 186, 269, 687
TaqI TCGA 4 cut(s) 162, 186, 687, 816
TasI AATT 6 cut(s) 215, 383, 519, 538, 574, 774
TatI WGTACW 1 cut(s) 504
TauI GCSGC 8 cut(s) 26, 84, 203, 233, 236, 249, 326, 553
TfiI GAWTC 1 cut(s) 499
Tru1I TTAA 1 cut(s) 777
Tru9I TTAA 1 cut(s) 777
TscAI CASTG 1 cut(s) 435
TseFI GTSAC 1 cut(s) 769
Tsp45I GTSAC 1 cut(s) 769
TspDTI ATGAA 2 cut(s) 271, 703
TspRI CASTG 1 cut(s) 435
Van91I CCANNNNNTGG 1 cut(s) 447
VpaK11BI GGWCC 1 cut(s) 425
XapI RAATTY 2 cut(s) 383, 574
XceI RCATGY 2 cut(s) 584, 746
XmaJI CCTAGG 1 cut(s) 121
XmiI GTMKAC 1 cut(s) 687
XmnI GAANNNNTTC 1 cut(s) 62
XspI CTAG 1 cut(s) 122
ZraI GACGTC 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.