Prupe.1G100900_v2.0.a1

GDP-L-fucose synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0010988
Physical Location & Seq
Forward (+)
8037970 .. 8039709
1740 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G100900.1

Sequence Viewer

Length: 975 bp
ATGAGTGGCGCCATTAACGATGCCACCTCGCCTTCCGCCCTCTCTGACAAATCGGCGAAGATCTTCGTCGCCGGTCACCGCGGACTTGTTGGCTCCGCCATCGTCCGCAAGCTCCAAGCCCTAGGGTTCACCAACCTCGTCCTCCGTGGCCATGCCGAGCTGGACCTCACTCGCCAAAACGACGTCGAGTCCTTCTTCGCCGTCGAAAAGCCCCAATTCGTCATCCTCGCCGCGGCAAAAGTTGGCGGCATTCACGCCAACAACACATACCCGGCTGATTTCATCGCCGTCAATCTCCAGATCCAGACCAATGTGATCGACGCCTCGTACCGATTCGGAGTCAAGAAGCTCTTGTTTCTCGGCTCCTCTTGTATTTACCCCAAGTTCGCGCCACAGCCTATCCCCGAAAGCGCATTGTTAACGGGCCCTCTGGAGCCCACAAATGAGTGGTATGCGATTGCCAAGATTGCCGGGATCAAGATGTGCCAGGCTTACCGGATTCAGTACAATTGGGATGCGATTTCGGGGATGCCCACCAATTTGTATGGGCCACATGACAACTTTCACCCCGAGAATTCGCACGTTTTGCCAGCATTGATGAGGCGGTTTCACGAGGCGAAGGTAAAGGGTGCGAAGGAGGTGGTGGTGTGGGGGTCTGGAAGCCCCTTGAGGGAGTTTTTGCACGTTGACGACCTAGCGGATGGGGTTGTGTTCTTGATGGAGAATTATAGTGGGCTAGAGCATGTCAATGTGGGTAGTGGCAAGGAGGTGACTATCAAGGAGTTGGCTGAGTTGGTGAAGGAAGTGGTTGGGTTTGAGGGTGAGCTTGTTTGGGACTCTTCCAAGCCTGATGGAACTCCGAGGAAGCTCATGGATAGCTCGAAGCTGGCGGGGTTGGGTTGGACCCCAAAGATCTCTCTCAAGGATGGTCTAGTTGATACCTATAAGTGGTACTTGGAGAATGTCAAGCAATGA

Protein Analysis

325

Amino Acids

35.54

Weight (kDa)

6.51

Isoelectric Point (pI)

19.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010988)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17890 AT1G17890 AT1G17890 AT1G73250
fragaria_vesca FvH4_4g08850 FvH4_4g08850 FvH4_4g08850
malus_domestica MD05G1099800.v1.1 MD10G1105500.v1.1
prunus_persica Prupe.1G100900_v2.0.a1
pyrus_communis pycom05g09860 pycom10g09090
rosa_chinensis RchiOBHm_Chr4g0405311
rosa_laevigata RLG00000008852
rosa_multiflora Rmu_sc0000161.1_g000028
rosa_roxburghii Rroxscaffold_5G00349690
rosa_rugosa Rorug04G0057300
rosa_samantha Rh4BG125000 Rh4CG137600
rosa_wichuraiana Rw4G010590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 186
AccB1I GGYRCC 1 cut(s) 8
AccII CGCG 3 cut(s) 81, 233, 389
AclWI GGATC 2 cut(s) 295, 482
AcoI YGGCCR 1 cut(s) 148
AcsI RAATTY 1 cut(s) 574
AcyI GRCGYC 3 cut(s) 9, 183, 321
AfaI GTAC 3 cut(s) 329, 506, 953
AfiI CCNNNNNNNGG 3 cut(s) 232, 670, 948
AhdI GACNNNNNGTC 1 cut(s) 187
AjnI CCWGG 1 cut(s) 486
AluBI AGCT 7 cut(s) 112, 160, 349, 826, 868, 879, 886
AluI AGCT 7 cut(s) 112, 160, 349, 826, 868, 879, 886
AlwI GGATC 2 cut(s) 295, 482
Ama87I CYCGRG 1 cut(s) 569
AoxI GGCC 3 cut(s) 148, 424, 548
ApaI GGGCCC 1 cut(s) 428
ApoI RAATTY 1 cut(s) 574
Asp700I GAANNNNTTC 1 cut(s) 62
AspA2I CCTAGG 1 cut(s) 121
AspLEI GCGC 3 cut(s) 11, 391, 413
AspS9I GGNCC 5 cut(s) 163, 424, 425, 548, 903
AsuC2I CCSGG 2 cut(s) 272, 472
AsuHPI GGTGA 6 cut(s) 68, 121, 557, 781, 808, 833
AvaI CYCGRG 1 cut(s) 569
AvaII GGWCC 2 cut(s) 163, 903
AvrII CCTAGG 1 cut(s) 121
BaeGI GKGCMC 1 cut(s) 428
BalI TGGCCA 1 cut(s) 150
BanI GGYRCC 1 cut(s) 8
BanII GRGCYC 2 cut(s) 428, 438
BauI CACGAG 1 cut(s) 611
BccI CCATC 5 cut(s) 107, 695, 712, 845, 920
BceAI ACGGC 2 cut(s) 185, 272
BciT130I CCWGG 1 cut(s) 488
BcnI CCSGG 2 cut(s) 272, 472
BfaI CTAG 4 cut(s) 122, 695, 737, 932
BfoI RGCGCY 1 cut(s) 12
BglII AGATCT 2 cut(s) 60, 912
BisI GCNGC 3 cut(s) 231, 234, 247
BlnI CCTAGG 1 cut(s) 121
BlsI GCNGC 3 cut(s) 232, 235, 248
Bme1390I CCNGG 3 cut(s) 272, 472, 488
Bme18I GGWCC 2 cut(s) 163, 903
BmeRI GACNNNNNGTC 1 cut(s) 187
BmeT110I CYCGRG 1 cut(s) 569
BmgT120I GGNCC 5 cut(s) 163, 424, 425, 548, 903
BmiI GGNNCC 6 cut(s) 10, 94, 364, 426, 435, 905
BmrFI CCNGG 3 cut(s) 272, 472, 488
BmsI GCATC 3 cut(s) 10, 505, 519
BpmI CTGGAG 2 cut(s) 281, 452
BpuEI CTTGAG 2 cut(s) 688, 905
BpuMI CCSGG 2 cut(s) 272, 472
BsaHI GRCGYC 3 cut(s) 9, 183, 321
BsaJI CCNNGG 5 cut(s) 79, 121, 145, 231, 860
BsaWI WCCGGW 1 cut(s) 495
Bsc4I CCNNNNNNNGG 3 cut(s) 232, 670, 948
Bse118I RCCGGY 1 cut(s) 71
BseBI CCWGG 1 cut(s) 488
BseDI CCNNGG 5 cut(s) 79, 121, 145, 231, 860
BseGI GGATG 5 cut(s) 222, 520, 534, 706, 931
BseLI CCNNNNNNNGG 3 cut(s) 232, 670, 948
BseMII CTCAG 1 cut(s) 780
BseRI GAGGAG 1 cut(s) 355
BseSI GKGCMC 1 cut(s) 428
Bsh1236I CGCG 3 cut(s) 81, 233, 389
BshFI GGCC 3 cut(s) 150, 426, 550
BshNI GGYRCC 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 569
BsiSI CCGG 4 cut(s) 72, 272, 471, 496
BslFI GGGAC 1 cut(s) 848
BslI CCNNNNNNNGG 3 cut(s) 232, 670, 948
BsmFI GGGAC 1 cut(s) 848
BsmI GAATGC 1 cut(s) 249
BsnI GGCC 3 cut(s) 150, 426, 550
BsoBI CYCGRG 1 cut(s) 569
Bsp120I GGGCCC 1 cut(s) 424
Bsp1286I GDGCHC 2 cut(s) 428, 438
Bsp143I GATC 5 cut(s) 60, 300, 315, 474, 912
BspANI GGCC 3 cut(s) 150, 426, 550
BspCNI CTCAG 1 cut(s) 781
BspFNI CGCG 3 cut(s) 81, 233, 389
BspLI GGNNCC 6 cut(s) 10, 94, 364, 426, 435, 905
BspPI GGATC 2 cut(s) 295, 482
BspT107I GGYRCC 1 cut(s) 8
BsrFI RCCGGY 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 5 cut(s) 79, 121, 145, 231, 860
BssMI GATC 5 cut(s) 60, 300, 315, 474, 912
BssNI GRCGYC 3 cut(s) 9, 183, 321
BssSI CACGAG 1 cut(s) 611
BssT1I CCWWGG 1 cut(s) 121
Bst2BI CACGAG 1 cut(s) 611
Bst2UI CCWGG 1 cut(s) 488
Bst6I CTCTTC 1 cut(s) 844
BstACI GRCGYC 3 cut(s) 9, 183, 321
BstAPI GCANNNNNTGC 1 cut(s) 586
BstC8I GCNNGC 3 cut(s) 110, 591, 888
BstDEI CTNAG 1 cut(s) 789
BstDSI CCRYGG 3 cut(s) 79, 145, 231
BstEII GGTNACC 1 cut(s) 74
BstF5I GGATG 5 cut(s) 222, 520, 534, 706, 931
BstFNI CGCG 3 cut(s) 81, 233, 389
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 3 cut(s) 11, 391, 413
BstKTI GATC 5 cut(s) 63, 303, 318, 477, 915
BstMBI GATC 5 cut(s) 60, 300, 315, 474, 912
BstMWI GCNNNNNNNGC 2 cut(s) 467, 586
BstNI CCWGG 1 cut(s) 488
BstNSI RCATGY 1 cut(s) 746
BstPI GGTNACC 1 cut(s) 74
BstSCI CCNGG 3 cut(s) 270, 470, 486
BstSLI GKGCMC 1 cut(s) 428
BstUI CGCG 3 cut(s) 81, 233, 389
BstX2I RGATCY 3 cut(s) 60, 300, 912
BstYI RGATCY 3 cut(s) 60, 300, 912
BsuRI GGCC 3 cut(s) 150, 426, 550
BtgI CCRYGG 3 cut(s) 79, 145, 231
BtgZI GCGATG 1 cut(s) 268
BtsCI GGATG 5 cut(s) 222, 520, 534, 706, 931
Cac8I GCNNGC 3 cut(s) 110, 591, 888
CfoI GCGC 3 cut(s) 11, 391, 413
Cfr10I RCCGGY 1 cut(s) 71
Cfr13I GGNCC 5 cut(s) 163, 424, 425, 548, 903
Cfr42I CCGCGG 2 cut(s) 82, 234
CseI GACGC 1 cut(s) 329
Csp6I GTAC 3 cut(s) 328, 505, 952
CviAII CATG 4 cut(s) 152, 554, 743, 871
CviQI GTAC 3 cut(s) 328, 505, 952
DdeI CTNAG 1 cut(s) 789
DinI GGCGCC 1 cut(s) 10
DpnI GATC 5 cut(s) 62, 302, 317, 476, 914
DpnII GATC 5 cut(s) 60, 300, 315, 474, 912
DriI GACNNNNNGTC 1 cut(s) 187
EaeI YGGCCR 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 844
Eam1105I GACNNNNNGTC 1 cut(s) 187
EarI CTCTTC 1 cut(s) 844
EciI GGCGGA 2 cut(s) 25, 85
Eco130I CCWWGG 1 cut(s) 121
Eco24I GRGCYC 2 cut(s) 428, 438
Eco47I GGWCC 2 cut(s) 163, 903
Eco88I CYCGRG 1 cut(s) 569
Eco91I GGTNACC 1 cut(s) 74
EcoO109I RGGNCCY 1 cut(s) 425
EcoO65I GGTNACC 1 cut(s) 74
EcoRI GAATTC 1 cut(s) 574
EcoRII CCWGG 1 cut(s) 486
EcoT14I CCWWGG 1 cut(s) 121
EcoT38I GRGCYC 2 cut(s) 428, 438
EgeI GGCGCC 1 cut(s) 10
EheI GGCGCC 1 cut(s) 10
ErhI CCWWGG 1 cut(s) 121
FaeI CATG 4 cut(s) 155, 557, 746, 874
FaiI YATR 9 cut(s) 153, 268, 453, 546, 555, 729, 744, 872, 945
FalI AAGNNNNNCTT 4 cut(s) 335, 367, 938, 970
FaqI GGGAC 1 cut(s) 848
FatI CATG 4 cut(s) 151, 553, 742, 870
FauI CCCGC 1 cut(s) 883
Fnu4HI GCNGC 3 cut(s) 231, 234, 247
FokI GGATG 5 cut(s) 209, 527, 541, 713, 938
FriOI GRGCYC 2 cut(s) 428, 438
Fsp4HI GCNGC 3 cut(s) 231, 234, 247
FspBI CTAG 4 cut(s) 122, 695, 737, 932
GlaI GCGC 3 cut(s) 10, 390, 412
GluI GCNGC 3 cut(s) 231, 234, 247
GsuI CTGGAG 2 cut(s) 281, 452
HaeII RGCGCY 1 cut(s) 12
HaeIII GGCC 3 cut(s) 150, 426, 550
HapII CCGG 4 cut(s) 72, 272, 471, 496
HgaI GACGC 1 cut(s) 329
HhaI GCGC 3 cut(s) 11, 391, 413
Hin1I GRCGYC 3 cut(s) 9, 183, 321
Hin1II CATG 4 cut(s) 155, 557, 746, 874
Hin6I GCGC 3 cut(s) 9, 389, 411
HinP1I GCGC 3 cut(s) 9, 389, 411
HincII GTYRAC 2 cut(s) 420, 688
HindII GTYRAC 2 cut(s) 420, 688
HinfI GANTC 5 cut(s) 188, 333, 339, 499, 836
HpaI GTTAAC 1 cut(s) 420
HpaII CCGG 4 cut(s) 72, 272, 471, 496
HphI GGTGA 6 cut(s) 68, 121, 557, 781, 808, 833
Hpy166II GTNNAC 3 cut(s) 129, 420, 688
Hpy188I TCNGA 3 cut(s) 46, 338, 861
Hpy188III TCNNGA 8 cut(s) 298, 304, 343, 431, 478, 611, 657, 715
Hpy8I GTNNAC 3 cut(s) 129, 420, 688
Hpy99I CGWCG 5 cut(s) 71, 185, 188, 206, 323
HpyAV CCTTC 5 cut(s) 42, 202, 613, 628, 793
HpyCH4IV ACGT 3 cut(s) 183, 582, 684
HpyCH4V TGCA 1 cut(s) 682
HpyF10VI GCNNNNNNNGC 2 cut(s) 467, 586
HpyF3I CTNAG 1 cut(s) 789
HpySE526I ACGT 3 cut(s) 183, 582, 684
Hsp92I GRCGYC 3 cut(s) 9, 183, 321
Hsp92II CATG 4 cut(s) 155, 557, 746, 874
HspAI GCGC 3 cut(s) 9, 389, 411
KasI GGCGCC 1 cut(s) 8
KspAI GTTAAC 1 cut(s) 420
KspI CCGCGG 2 cut(s) 82, 234
Kzo9I GATC 5 cut(s) 60, 300, 315, 474, 912
LmnI GCTCC 4 cut(s) 98, 117, 368, 433
LweI GCATC 3 cut(s) 10, 505, 519
MaeI CTAG 4 cut(s) 122, 695, 737, 932
MaeII ACGT 3 cut(s) 183, 582, 684
MaeIII GTNAC 2 cut(s) 74, 769
MalI GATC 5 cut(s) 62, 302, 317, 476, 914
MboI GATC 5 cut(s) 60, 300, 315, 474, 912
MboII GAAGA 4 cut(s) 55, 70, 187, 831
MfeI CAATTG 1 cut(s) 508
MflI RGATCY 3 cut(s) 60, 300, 912
MhlI GDGCHC 2 cut(s) 428, 438
MlsI TGGCCA 1 cut(s) 150
MluCI AATT 5 cut(s) 215, 508, 538, 574, 724
MluNI TGGCCA 1 cut(s) 150
Mly113I GGCGCC 1 cut(s) 9
MlyI GAGTC 3 cut(s) 197, 348, 830
MmeI TCCRAC 1 cut(s) 881
Mox20I TGGCCA 1 cut(s) 150
MroXI GAANNNNTTC 1 cut(s) 62
MscI TGGCCA 1 cut(s) 150
MseI TTAA 2 cut(s) 15, 419
MslI CAYNNNNRTG 1 cut(s) 747
Msp20I TGGCCA 1 cut(s) 150
MspA1I CMGCKG 2 cut(s) 81, 233
MspI CCGG 4 cut(s) 72, 272, 471, 496
MspR9I CCNGG 3 cut(s) 272, 472, 488
MunI CAATTG 1 cut(s) 508
Mva1269I GAATGC 1 cut(s) 249
MvaI CCWGG 1 cut(s) 488
MvnI CGCG 3 cut(s) 81, 233, 389
MwoI GCNNNNNNNGC 2 cut(s) 467, 586
NarI GGCGCC 1 cut(s) 9
NciI CCSGG 2 cut(s) 272, 472
NdeII GATC 5 cut(s) 60, 300, 315, 474, 912
NlaIII CATG 4 cut(s) 155, 557, 746, 874
NlaIV GGNNCC 6 cut(s) 10, 94, 364, 426, 435, 905
NmeAIII GCCGAG 2 cut(s) 181, 339
NmuCI GTSAC 2 cut(s) 74, 769
NspI RCATGY 1 cut(s) 746
PctI GAATGC 1 cut(s) 249
PdmI GAANNNNTTC 1 cut(s) 62
PfeI GAWTC 2 cut(s) 333, 499
PkrI GCNGC 3 cut(s) 232, 235, 248
PleI GAGTC 3 cut(s) 196, 347, 830
PluTI GGCGCC 1 cut(s) 12
PpsI GAGTC 3 cut(s) 196, 347, 830
Psp6I CCWGG 1 cut(s) 486
PspEI GGTNACC 1 cut(s) 74
PspGI CCWGG 1 cut(s) 486
PspN4I GGNNCC 6 cut(s) 10, 94, 364, 426, 435, 905
PspOMI GGGCCC 1 cut(s) 424
PspPI GGNCC 5 cut(s) 163, 424, 425, 548, 903
PsuI RGATCY 3 cut(s) 60, 300, 912
RsaI GTAC 3 cut(s) 329, 506, 953
RsaNI GTAC 3 cut(s) 328, 505, 952
RseI CAYNNNNRTG 1 cut(s) 747
SacII CCGCGG 2 cut(s) 82, 234
SaqAI TTAA 2 cut(s) 15, 419
SatI GCNGC 3 cut(s) 231, 234, 247
Sau3AI GATC 5 cut(s) 60, 300, 315, 474, 912
Sau96I GGNCC 5 cut(s) 163, 424, 425, 548, 903
SchI GAGTC 3 cut(s) 197, 348, 830
ScrFI CCNGG 3 cut(s) 272, 472, 488
SduI GDGCHC 2 cut(s) 428, 438
SfaNI GCATC 3 cut(s) 10, 505, 519
SfoI GGCGCC 1 cut(s) 10
Sfr303I CCGCGG 2 cut(s) 82, 234
SgrBI CCGCGG 2 cut(s) 82, 234
SinI GGWCC 2 cut(s) 163, 903
SmiMI CAYNNNNRTG 1 cut(s) 747
SmlI CTYRAG 2 cut(s) 667, 920
SmoI CTYRAG 2 cut(s) 667, 920
Sse9I AATT 5 cut(s) 215, 508, 538, 574, 724
SspDI GGCGCC 1 cut(s) 8
SspMI CTAG 4 cut(s) 122, 695, 737, 932
StyD4I CCNGG 3 cut(s) 270, 470, 486
StyI CCWWGG 1 cut(s) 121
TaiI ACGT 3 cut(s) 186, 585, 687
TaqI TCGA 4 cut(s) 186, 204, 318, 881
TasI AATT 5 cut(s) 215, 508, 538, 574, 724
TatI WGTACW 1 cut(s) 504
TauI GCSGC 3 cut(s) 233, 236, 249
TfiI GAWTC 2 cut(s) 333, 499
Tru1I TTAA 2 cut(s) 15, 419
Tru9I TTAA 2 cut(s) 15, 419
TseFI GTSAC 2 cut(s) 74, 769
Tsp45I GTSAC 2 cut(s) 74, 769
TspDTI ATGAA 1 cut(s) 271
TspGWI ACGGA 1 cut(s) 134
VpaK11BI GGWCC 2 cut(s) 163, 903
XapI RAATTY 1 cut(s) 574
XceI RCATGY 1 cut(s) 746
XmaJI CCTAGG 1 cut(s) 121
XmnI GAANNNNTTC 1 cut(s) 62
XspI CTAG 4 cut(s) 122, 695, 737, 932
ZraI GACGTC 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.