MD10G1105500.v1.1

GDP-L-fucose synthase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
17236235 .. 17237661
1427 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1105500.v1.1.491

Sequence Viewer

Length: 975 bp
ATGAGTGGCGCCAAGAACAATGCCACTTCGCCTTCCTTCCTCTCTGACAAATCGGCGAAGGTTTTCGTAGCCGGCCACCGCGGCCTCGTCGGCTCCGCCATCGTCCGCAAGCTCCATGCCCTAGGCTTCACCAGCCTCGTCCTCCGCACCCACGCCGAGCTCGACCTCACTCGCCAGGCCGACGTCGAGTCCTTTTTCGCCGCCGAGAAACCCCAATTCTTGATCCTCGCCGCCGCTAAAGTCGGTGGCATTCACGCCAACAACACGTACCCGGCGGATTTCATCGCCGTCAATCTCCAGATCCAGACCAATGTCATAGACGCCGCCTACCGATTTGGAGTCAAGAAGCTCTTGTTCCTTGGCTCCTCCTGCATTTACCCCAAATTCGCTCCTCAACCCATCCCGGAGAACGCATTGCTGACGGGACCACTGGAGCCTACCAACGAGTGGTACGCCATCGCCAAGATCGCCGGGATCAAGATGTGCCAGGCGTATCGGATTCAGTACAGTTGGGATGCAATTTCTGGGATGCCCACCAATTTGTATGGGCCGCATGACAACTTTCACCCTGAAAATTCGCACGTGTTGCCGGCATTGATGAGGCGGTTTCACGAGGCAAAGGTGAAAGGGGCGGAGGAGGTGGTGGTGTGGGGGACTGGAAGCCCCCTGAGAGAGTTTTTGCACGTGGACGATTTGGCAGATGGAGTGGTGTTCATGATGGACAGTTATAGTGGGTTGGAGCATGTCAATGTGGGGAGTGGCAAGGAAGTGACAATTAAGGAGTTGGCTGAGCTTGTCAAGGAGGTTGTTGGGTTCGAGGGCCGACTTGTTTGGGACTCTACCAAGCCCGATGGAACTCCGAGGAAGCTCATGGATAGCTCAAAGCTTGCAGGGTTGGGGTGGACACCGAAGATCTCGCTGAAAGACGGGCTTGTTGATACTTATAGCTGGTACTTGGAGAATGTCAAGCAATAA

Protein Analysis

325

Amino Acids

35.56

Weight (kDa)

6.8

Isoelectric Point (pI)

19.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RmlD_sub_bind PF04321 20 - 136 1e-06 RmlD substrate binding domain
Epimerase PF01370 21 - 252 5.1e-64 NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd PF16363 53 - 311 4e-18 GDP-mannose 4,6 dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010988)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 186
AccB1I GGYRCC 1 cut(s) 8
AccB7I CCANNNNNTGG 1 cut(s) 447
AccII CGCG 1 cut(s) 81
AclWI GGATC 3 cut(s) 217, 295, 482
AcoI YGGCCR 1 cut(s) 73
AcsI RAATTY 2 cut(s) 383, 574
AcvI CACGTG 2 cut(s) 583, 685
AcyI GRCGYC 3 cut(s) 9, 183, 321
AfaI GTAC 4 cut(s) 269, 452, 506, 953
AfiI CCNNNNNNNGG 1 cut(s) 447
AflIII ACRYGT 2 cut(s) 264, 582
AhdI GACNNNNNGTC 1 cut(s) 187
AjnI CCWGG 2 cut(s) 174, 486
AluBI AGCT 8 cut(s) 112, 160, 349, 793, 868, 879, 886, 948
AluI AGCT 8 cut(s) 112, 160, 349, 793, 868, 879, 886, 948
Alw21I GWGCWC 1 cut(s) 162
AlwI GGATC 3 cut(s) 217, 295, 482
AoxI GGCC 5 cut(s) 73, 82, 177, 548, 820
ApoI RAATTY 2 cut(s) 383, 574
Asp700I GAANNNNTTC 1 cut(s) 62
AspA2I CCTAGG 1 cut(s) 121
AspLEI GCGC 1 cut(s) 11
AspS9I GGNCC 3 cut(s) 425, 548, 820
AsuC2I CCSGG 3 cut(s) 272, 404, 472
AsuHPI GGTGA 3 cut(s) 121, 557, 634
AvaII GGWCC 1 cut(s) 425
AvrII CCTAGG 1 cut(s) 121
BanI GGYRCC 1 cut(s) 8
BanII GRGCYC 1 cut(s) 162
BauI CACGAG 1 cut(s) 611
BbrPI CACGTG 2 cut(s) 583, 685
Bbv12I GWGCWC 1 cut(s) 162
BccI CCATC 6 cut(s) 107, 407, 464, 695, 712, 845
BceAI ACGGC 1 cut(s) 272
BciT130I CCWGG 2 cut(s) 176, 488
BcnI CCSGG 3 cut(s) 272, 404, 472
BfaI CTAG 1 cut(s) 122
BfoI RGCGCY 1 cut(s) 12
BglI GCCNNNNNGGC 2 cut(s) 81, 90
BglII AGATCT 1 cut(s) 912
BisI GCNGC 6 cut(s) 82, 201, 231, 234, 324, 551
BlnI CCTAGG 1 cut(s) 121
BlpI GCTNAGC 1 cut(s) 789
BlsI GCNGC 6 cut(s) 83, 202, 232, 235, 325, 552
Bme1390I CCNGG 5 cut(s) 176, 272, 404, 472, 488
Bme18I GGWCC 1 cut(s) 425
BmeRI GACNNNNNGTC 1 cut(s) 187
BmgT120I GGNCC 3 cut(s) 425, 548, 820
BmiI GGNNCC 5 cut(s) 10, 94, 364, 426, 435
BmrFI CCNGG 5 cut(s) 176, 272, 404, 472, 488
BmsI GCATC 2 cut(s) 505, 519
BoxI GACNNNNGTC 1 cut(s) 311
BpmI CTGGAG 2 cut(s) 281, 452
Bpu1102I GCTNAGC 1 cut(s) 789
BpuMI CCSGG 3 cut(s) 272, 404, 472
BsaAI YACGTR 3 cut(s) 267, 583, 685
BsaHI GRCGYC 3 cut(s) 9, 183, 321
BsaJI CCNNGG 4 cut(s) 79, 121, 358, 860
Bsc4I CCNNNNNNNGG 1 cut(s) 447
Bse118I RCCGGY 2 cut(s) 71, 589
Bse1I ACTGG 2 cut(s) 435, 661
Bse3DI GCAATG 1 cut(s) 413
BseBI CCWGG 2 cut(s) 176, 488
BseDI CCNNGG 4 cut(s) 79, 121, 358, 860
BseGI GGATG 3 cut(s) 399, 520, 534
BseLI CCNNNNNNNGG 1 cut(s) 447
BseMI GCAATG 1 cut(s) 413
BseMII CTCAG 2 cut(s) 659, 780
BseNI ACTGG 2 cut(s) 435, 661
BseRI GAGGAG 3 cut(s) 355, 381, 650
Bsh1236I CGCG 1 cut(s) 81
BshFI GGCC 5 cut(s) 75, 84, 179, 550, 822
BshNI GGYRCC 1 cut(s) 8
BsiHKAI GWGCWC 1 cut(s) 162
BsiSI CCGG 5 cut(s) 72, 272, 404, 471, 590
BslFI GGGAC 3 cut(s) 438, 667, 848
BslI CCNNNNNNNGG 1 cut(s) 447
BsmFI GGGAC 3 cut(s) 438, 667, 848
BsmI GAATGC 1 cut(s) 249
BsnI GGCC 5 cut(s) 75, 84, 179, 550, 822
Bsp1286I GDGCHC 1 cut(s) 162
Bsp143I GATC 5 cut(s) 222, 300, 465, 474, 912
Bsp1720I GCTNAGC 1 cut(s) 789
BspANI GGCC 5 cut(s) 75, 84, 179, 550, 822
BspCNI CTCAG 2 cut(s) 660, 781
BspFNI CGCG 1 cut(s) 81
BspHI TCATGA 1 cut(s) 714
BspLI GGNNCC 5 cut(s) 10, 94, 364, 426, 435
BspPI GGATC 3 cut(s) 217, 295, 482
BspT107I GGYRCC 1 cut(s) 8
BsrDI GCAATG 1 cut(s) 413
BsrFI RCCGGY 2 cut(s) 71, 589
BsrI ACTGG 2 cut(s) 435, 661
BssAI RCCGGY 2 cut(s) 71, 589
BssECI CCNNGG 4 cut(s) 79, 121, 358, 860
BssMI GATC 5 cut(s) 222, 300, 465, 474, 912
BssNI GRCGYC 3 cut(s) 9, 183, 321
BssSI CACGAG 1 cut(s) 611
BssT1I CCWWGG 2 cut(s) 121, 358
Bst2BI CACGAG 1 cut(s) 611
Bst2UI CCWGG 2 cut(s) 176, 488
Bst4CI ACNGT 2 cut(s) 509, 725
BstACI GRCGYC 3 cut(s) 9, 183, 321
BstAPI GCANNNNNTGC 1 cut(s) 586
BstBAI YACGTR 3 cut(s) 267, 583, 685
BstC8I GCNNGC 4 cut(s) 73, 110, 591, 888
BstDEI CTNAG 2 cut(s) 668, 789
BstDSI CCRYGG 1 cut(s) 79
BstF5I GGATG 3 cut(s) 399, 520, 534
BstFNI CGCG 1 cut(s) 81
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 1 cut(s) 11
BstKTI GATC 5 cut(s) 225, 303, 468, 477, 915
BstMBI GATC 5 cut(s) 222, 300, 465, 474, 912
BstMWI GCNNNNNNNGC 6 cut(s) 81, 90, 132, 369, 467, 586
BstNI CCWGG 2 cut(s) 176, 488
BstNSI RCATGY 1 cut(s) 746
BstPAI GACNNNNGTC 1 cut(s) 311
BstSCI CCNGG 5 cut(s) 174, 270, 402, 470, 486
BstUI CGCG 1 cut(s) 81
BstX2I RGATCY 2 cut(s) 300, 912
BstYI RGATCY 2 cut(s) 300, 912
BsuRI GGCC 5 cut(s) 75, 84, 179, 550, 822
BtgI CCRYGG 1 cut(s) 79
BtgZI GCGATG 2 cut(s) 268, 442
BtsCI GGATG 3 cut(s) 399, 520, 534
BtsIMutI CAGTG 1 cut(s) 428
Cac8I GCNNGC 4 cut(s) 73, 110, 591, 888
CciI TCATGA 1 cut(s) 714
CfoI GCGC 1 cut(s) 11
Cfr10I RCCGGY 2 cut(s) 71, 589
Cfr13I GGNCC 3 cut(s) 425, 548, 820
Cfr42I CCGCGG 1 cut(s) 82
CseI GACGC 1 cut(s) 329
Csp6I GTAC 4 cut(s) 268, 451, 505, 952
CviAII CATG 5 cut(s) 116, 554, 715, 743, 871
CviQI GTAC 4 cut(s) 268, 451, 505, 952
DdeI CTNAG 2 cut(s) 668, 789
DinI GGCGCC 1 cut(s) 10
DpnI GATC 5 cut(s) 224, 302, 467, 476, 914
DpnII GATC 5 cut(s) 222, 300, 465, 474, 912
DriI GACNNNNNGTC 1 cut(s) 187
EaeI YGGCCR 1 cut(s) 73
Eam1105I GACNNNNNGTC 1 cut(s) 187
EciI GGCGGA 3 cut(s) 85, 290, 647
Ecl136II GAGCTC 1 cut(s) 160
Eco130I CCWWGG 2 cut(s) 121, 358
Eco24I GRGCYC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 425
Eco53kI GAGCTC 1 cut(s) 160
Eco72I CACGTG 2 cut(s) 583, 685
EcoICRI GAGCTC 1 cut(s) 160
EcoRII CCWGG 2 cut(s) 174, 486
EcoT14I CCWWGG 2 cut(s) 121, 358
EcoT38I GRGCYC 1 cut(s) 162
EgeI GGCGCC 1 cut(s) 10
EheI GGCGCC 1 cut(s) 10
ErhI CCWWGG 2 cut(s) 121, 358
FaeI CATG 5 cut(s) 119, 557, 718, 746, 874
FaiI YATR 9 cut(s) 117, 317, 546, 555, 716, 729, 744, 872, 945
FalI AAGNNNNNCTT 4 cut(s) 335, 367, 915, 947
FaqI GGGAC 3 cut(s) 438, 667, 848
FatI CATG 5 cut(s) 115, 553, 714, 742, 870
Fnu4HI GCNGC 6 cut(s) 82, 201, 231, 234, 324, 551
FokI GGATG 3 cut(s) 386, 527, 541
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 6 cut(s) 82, 201, 231, 234, 324, 551
FspBI CTAG 1 cut(s) 122
GlaI GCGC 1 cut(s) 10
GluI GCNGC 6 cut(s) 82, 201, 231, 234, 324, 551
GsuI CTGGAG 2 cut(s) 281, 452
HaeII RGCGCY 1 cut(s) 12
HaeIII GGCC 5 cut(s) 75, 84, 179, 550, 822
HapII CCGG 5 cut(s) 72, 272, 404, 471, 590
HgaI GACGC 1 cut(s) 329
HhaI GCGC 1 cut(s) 11
Hin1I GRCGYC 3 cut(s) 9, 183, 321
Hin1II CATG 5 cut(s) 119, 557, 718, 746, 874
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HindIII AAGCTT 1 cut(s) 884
HinfI GANTC 4 cut(s) 188, 339, 499, 836
HpaII CCGG 5 cut(s) 72, 272, 404, 471, 590
HphI GGTGA 3 cut(s) 121, 557, 634
Hpy166II GTNNAC 2 cut(s) 688, 903
Hpy188I TCNGA 3 cut(s) 46, 498, 861
Hpy188III TCNNGA 7 cut(s) 220, 298, 304, 343, 478, 611, 715
Hpy8I GTNNAC 2 cut(s) 688, 903
Hpy99I CGWCG 3 cut(s) 92, 185, 188
HpyAV CCTTC 3 cut(s) 42, 46, 52
HpyCH4III ACNGT 2 cut(s) 509, 725
HpyCH4IV ACGT 4 cut(s) 183, 266, 582, 684
HpyCH4V TGCA 4 cut(s) 372, 518, 682, 890
HpyF10VI GCNNNNNNNGC 6 cut(s) 81, 90, 132, 369, 467, 586
HpyF3I CTNAG 2 cut(s) 668, 789
HpySE526I ACGT 4 cut(s) 183, 266, 582, 684
Hsp92I GRCGYC 3 cut(s) 9, 183, 321
Hsp92II CATG 5 cut(s) 119, 557, 718, 746, 874
HspAI GCGC 1 cut(s) 9
KasI GGCGCC 1 cut(s) 8
KroI GCCGGC 2 cut(s) 71, 589
KroNI GCCGGC 2 cut(s) 73, 591
KspI CCGCGG 1 cut(s) 82
Kzo9I GATC 5 cut(s) 222, 300, 465, 474, 912
LmnI GCTCC 6 cut(s) 98, 117, 368, 394, 433, 739
LweI GCATC 2 cut(s) 505, 519
MaeI CTAG 1 cut(s) 122
MaeII ACGT 4 cut(s) 183, 266, 582, 684
MaeIII GTNAC 1 cut(s) 769
MalI GATC 5 cut(s) 224, 302, 467, 476, 914
MboI GATC 5 cut(s) 222, 300, 465, 474, 912
MboII GAAGA 1 cut(s) 922
MflI RGATCY 2 cut(s) 300, 912
MhlI GDGCHC 1 cut(s) 162
MluCI AATT 6 cut(s) 215, 383, 519, 538, 574, 774
Mly113I GGCGCC 1 cut(s) 9
MlyI GAGTC 3 cut(s) 197, 348, 830
MmeI TCCRAC 1 cut(s) 717
MroNI GCCGGC 2 cut(s) 71, 589
MroXI GAANNNNTTC 1 cut(s) 62
MseI TTAA 1 cut(s) 777
MslI CAYNNNNRTG 1 cut(s) 747
MspA1I CMGCKG 1 cut(s) 81
MspI CCGG 5 cut(s) 72, 272, 404, 471, 590
MspR9I CCNGG 5 cut(s) 176, 272, 404, 472, 488
Mva1269I GAATGC 1 cut(s) 249
MvaI CCWGG 2 cut(s) 176, 488
MvnI CGCG 1 cut(s) 81
MwoI GCNNNNNNNGC 6 cut(s) 81, 90, 132, 369, 467, 586
NaeI GCCGGC 2 cut(s) 73, 591
NarI GGCGCC 1 cut(s) 9
NciI CCSGG 3 cut(s) 272, 404, 472
NdeII GATC 5 cut(s) 222, 300, 465, 474, 912
NgoMIV GCCGGC 2 cut(s) 71, 589
NlaIII CATG 5 cut(s) 119, 557, 718, 746, 874
NlaIV GGNNCC 5 cut(s) 10, 94, 364, 426, 435
NmeAIII GCCGAG 2 cut(s) 181, 229
NmuCI GTSAC 1 cut(s) 769
NspI RCATGY 1 cut(s) 746
PagI TCATGA 1 cut(s) 714
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PctI GAATGC 1 cut(s) 249
PdiI GCCGGC 2 cut(s) 73, 591
PdmI GAANNNNTTC 1 cut(s) 62
PfeI GAWTC 1 cut(s) 499
PflMI CCANNNNNTGG 1 cut(s) 447
PfoI TCCNGGA 1 cut(s) 402
PkrI GCNGC 6 cut(s) 83, 202, 232, 235, 325, 552
PleI GAGTC 3 cut(s) 196, 347, 830
PluTI GGCGCC 1 cut(s) 12
PmaCI CACGTG 2 cut(s) 583, 685
PmlI CACGTG 2 cut(s) 583, 685
PpsI GAGTC 3 cut(s) 196, 347, 830
Ppu21I YACGTR 3 cut(s) 267, 583, 685
PshAI GACNNNNGTC 1 cut(s) 311
Psp124BI GAGCTC 1 cut(s) 162
Psp6I CCWGG 2 cut(s) 174, 486
PspCI CACGTG 2 cut(s) 583, 685
PspGI CCWGG 2 cut(s) 174, 486
PspN4I GGNNCC 5 cut(s) 10, 94, 364, 426, 435
PspPI GGNCC 3 cut(s) 425, 548, 820
PsuI RGATCY 2 cut(s) 300, 912
RsaI GTAC 4 cut(s) 269, 452, 506, 953
RsaNI GTAC 4 cut(s) 268, 451, 505, 952
RseI CAYNNNNRTG 1 cut(s) 747
SacI GAGCTC 1 cut(s) 162
SacII CCGCGG 1 cut(s) 82
SaqAI TTAA 1 cut(s) 777
SatI GCNGC 6 cut(s) 82, 201, 231, 234, 324, 551
Sau3AI GATC 5 cut(s) 222, 300, 465, 474, 912
Sau96I GGNCC 3 cut(s) 425, 548, 820
SchI GAGTC 3 cut(s) 197, 348, 830
ScrFI CCNGG 5 cut(s) 176, 272, 404, 472, 488
SduI GDGCHC 1 cut(s) 162
SfaNI GCATC 2 cut(s) 505, 519
SfiI GGCCNNNNNGGCC 1 cut(s) 81
SfoI GGCGCC 1 cut(s) 10
Sfr303I CCGCGG 1 cut(s) 82
SgrBI CCGCGG 1 cut(s) 82
SinI GGWCC 1 cut(s) 425
SmiMI CAYNNNNRTG 1 cut(s) 747
Sse9I AATT 6 cut(s) 215, 383, 519, 538, 574, 774
SspDI GGCGCC 1 cut(s) 8
SspMI CTAG 1 cut(s) 122
SstI GAGCTC 1 cut(s) 162
StyD4I CCNGG 5 cut(s) 174, 270, 402, 470, 486
StyI CCWWGG 2 cut(s) 121, 358
TaaI ACNGT 2 cut(s) 509, 725
TaiI ACGT 4 cut(s) 186, 269, 585, 687
TaqI TCGA 3 cut(s) 162, 186, 816
TasI AATT 6 cut(s) 215, 383, 519, 538, 574, 774
TatI WGTACW 1 cut(s) 504
TauI GCSGC 6 cut(s) 84, 203, 233, 236, 326, 553
TfiI GAWTC 1 cut(s) 499
Tru1I TTAA 1 cut(s) 777
Tru9I TTAA 1 cut(s) 777
TscAI CASTG 1 cut(s) 435
TseFI GTSAC 1 cut(s) 769
Tsp45I GTSAC 1 cut(s) 769
TspDTI ATGAA 2 cut(s) 271, 703
TspRI CASTG 1 cut(s) 435
Van91I CCANNNNNTGG 1 cut(s) 447
VpaK11BI GGWCC 1 cut(s) 425
XapI RAATTY 2 cut(s) 383, 574
XceI RCATGY 1 cut(s) 746
XmaJI CCTAGG 1 cut(s) 121
XmnI GAANNNNTTC 1 cut(s) 62
XspI CTAG 1 cut(s) 122
ZraI GACGTC 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.