FvH4_4g08850

GDP-L-fucose synthase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
9566168 .. 9570481
4314 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g08850.t2

Sequence Viewer

Length: 975 bp
ATGAGTGTCGCCATTGATGATGCTACCTCGCCTTCCTTCTTCTTAGACAAATCCGCAAAGATCTTCGTCGCCGGCCACCGCGGCCTGGTGGGCTCCGCCATCGTCCGCAAGCTCCATTCCCTAGGCTTCACCAACCTCCTCCTCCGCACCCATGCCGAACTCGATCTCACCCGCCAAGCCGACGTCGAGTCCTTCTTCGCCGCCGAAACCCCCCAATTCGTAATCCTCGCCGCCGCAAAAGTCGGTGGCATTCACGCCAACAACACTTATCCGGCCGACTTCATCGCACTCAACCTCCAAATCCAGACTAACGTCATCGACGCCTCCCACCGCTTCGGCGTCAAGAAGCTCCTCTTCCTCGGCTCCTCTTGCATCTACCCCAAGTTCGCACCTCAGCCGATCCCGGAAAACGCGCTCTTGACGGGCCCACTCGAGCCCACCAACGAGTGGTACGCCATTGCCAAGATTGCCGGCATCAAGATGTGCCAGGCTTACCGCATTCAGTACAACTGGGATGCCATTTCCGGCATGCCCACCAACCTCTACGGGCCGCAGGACAACTTCCACCCCGAGAATTCACACGTGCTGCCAGCATTGATGACGCGATTTCATGAGGCCAAGGTCAATGGCGCCAAAGAGGTGGTGGTTTGGGGGAGCGGAAGCCCCTTGAGGGAGTTTCTGCACGTGGATGATCTCGCCGACGCGGTGGTGTTCTTGATGGGGAGTTACAGTGGGTTGGAGCATGTCAATGTGGGTAGTGGGAAGGAGGTCACTATCAAGGAGTTGGCGGAATTGGTTAAGGAGGTTGTGGGGTTTCAAGGTCAGCTTGTTTGGGACTCGTCTAAGCTGGATGGAACTCCCAGGAAGCTCATGGATAGCTCCAAGCTTGCGGGATTGGGTTGGACCCCTAAGATCTCCCTCAAGGAGGGGCTGGTTGGTACCTACAAGTGGTACTTGGAGAATGCCAAGCAATGA

Protein Analysis

325

Amino Acids

35.5

Weight (kDa)

6.55

Isoelectric Point (pI)

19.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RmlD_sub_bind PF04321 20 - 127 6.2e-06 RmlD substrate binding domain
Epimerase PF01370 21 - 252 4.4e-63 NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd PF16363 53 - 310 5.9e-18 GDP-mannose 4,6 dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010988)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 186
Acc65I GGTACC 1 cut(s) 938
AccB1I GGYRCC 2 cut(s) 629, 938
AccB7I CCANNNNNTGG 1 cut(s) 447
AccBSI CCGCTC 1 cut(s) 657
AccII CGCG 4 cut(s) 81, 413, 604, 704
AclWI GGATC 1 cut(s) 394
AcoI YGGCCR 2 cut(s) 73, 273
AcsI RAATTY 1 cut(s) 574
AcvI CACGTG 2 cut(s) 583, 685
AcyI GRCGYC 4 cut(s) 183, 321, 339, 630
AfaI GTAC 4 cut(s) 452, 506, 940, 953
AfiI CCNNNNNNNGG 5 cut(s) 85, 447, 670, 925, 948
AflIII ACRYGT 1 cut(s) 580
AgsI TTSAA 1 cut(s) 818
AhdI GACNNNNNGTC 1 cut(s) 187
AjnI CCWGG 3 cut(s) 84, 486, 860
AluBI AGCT 7 cut(s) 112, 349, 826, 847, 868, 879, 886
AluI AGCT 7 cut(s) 112, 349, 826, 847, 868, 879, 886
AlwI GGATC 1 cut(s) 394
Ama87I CYCGRG 2 cut(s) 431, 569
AoxI GGCC 6 cut(s) 73, 82, 273, 424, 548, 615
ApaI GGGCCC 1 cut(s) 428
ApeKI GCWGC 1 cut(s) 586
ApoI RAATTY 1 cut(s) 574
Asp718I GGTACC 1 cut(s) 938
AspA2I CCTAGG 1 cut(s) 121
AspLEI GCGC 2 cut(s) 415, 632
AspS9I GGNCC 4 cut(s) 424, 425, 548, 903
AsuC2I CCSGG 1 cut(s) 404
AsuHPI GGTGA 2 cut(s) 121, 160
AvaI CYCGRG 2 cut(s) 431, 569
AvaII GGWCC 1 cut(s) 903
AvrII CCTAGG 1 cut(s) 121
BaeGI GKGCMC 1 cut(s) 428
BanI GGYRCC 2 cut(s) 629, 938
BanII GRGCYC 3 cut(s) 95, 428, 438
BbrPI CACGTG 2 cut(s) 583, 685
BbvCI CCTCAGC 1 cut(s) 393
BbvI GCAGC 1 cut(s) 573
BccI CCATC 3 cut(s) 107, 712, 845
BciT130I CCWGG 3 cut(s) 86, 488, 862
BcnI CCSGG 1 cut(s) 404
BfaI CTAG 1 cut(s) 122
BfoI RGCGCY 1 cut(s) 633
BglI GCCNNNNNGGC 2 cut(s) 81, 90
BglII AGATCT 2 cut(s) 60, 912
BisI GCNGC 6 cut(s) 82, 201, 231, 234, 551, 587
BlnI CCTAGG 1 cut(s) 121
BlsI GCNGC 6 cut(s) 83, 202, 232, 235, 552, 588
Bme1390I CCNGG 4 cut(s) 86, 404, 488, 862
Bme18I GGWCC 1 cut(s) 903
BmeRI GACNNNNNGTC 1 cut(s) 187
BmeT110I CYCGRG 2 cut(s) 431, 569
BmgT120I GGNCC 4 cut(s) 424, 425, 548, 903
BmiI GGNNCC 6 cut(s) 94, 364, 426, 631, 905, 940
BmrFI CCNGG 4 cut(s) 86, 404, 488, 862
BmrI ACTGGG 1 cut(s) 520
BmsI GCATC 4 cut(s) 10, 381, 483, 505
BmuI ACTGGG 1 cut(s) 520
BoxI GACNNNNGTC 1 cut(s) 311
Bpu10I CCTNAGC 1 cut(s) 393
BpuEI CTTGAG 2 cut(s) 688, 905
BpuMI CCSGG 1 cut(s) 404
BsaAI YACGTR 2 cut(s) 583, 685
BsaHI GRCGYC 4 cut(s) 183, 321, 339, 630
BsaJI CCNNGG 5 cut(s) 79, 121, 358, 618, 860
BsaXI ACNNNNNCTCC 4 cut(s) 279, 309, 715, 745
Bsc4I CCNNNNNNNGG 5 cut(s) 85, 447, 670, 925, 948
Bse118I RCCGGY 2 cut(s) 71, 470
Bse1I ACTGG 1 cut(s) 515
Bse3DI GCAATG 1 cut(s) 456
BseBI CCWGG 3 cut(s) 86, 488, 862
BseDI CCNNGG 5 cut(s) 79, 121, 358, 618, 860
BseGI GGATG 3 cut(s) 520, 694, 856
BseLI CCNNNNNNNGG 5 cut(s) 85, 447, 670, 925, 948
BseMI GCAATG 1 cut(s) 456
BseMII CTCAG 1 cut(s) 407
BseNI ACTGG 1 cut(s) 515
BseRI GAGGAG 4 cut(s) 128, 131, 341, 355
BseSI GKGCMC 1 cut(s) 428
BseX3I CGGCCG 1 cut(s) 273
BseXI GCAGC 1 cut(s) 573
BsgI GTGCAG 1 cut(s) 665
Bsh1236I CGCG 4 cut(s) 81, 413, 604, 704
Bsh1285I CGRYCG 1 cut(s) 276
BshFI GGCC 6 cut(s) 75, 84, 275, 426, 550, 617
BshNI GGYRCC 2 cut(s) 629, 938
BsiEI CGRYCG 1 cut(s) 276
BsiHKCI CYCGRG 2 cut(s) 431, 569
BsiSI CCGG 5 cut(s) 72, 272, 404, 471, 525
BslFI GGGAC 1 cut(s) 848
BslI CCNNNNNNNGG 5 cut(s) 85, 447, 670, 925, 948
BsmFI GGGAC 1 cut(s) 848
BsmI GAATGC 3 cut(s) 249, 498, 967
BsnI GGCC 6 cut(s) 75, 84, 275, 426, 550, 617
BsoBI CYCGRG 2 cut(s) 431, 569
Bsp120I GGGCCC 1 cut(s) 424
Bsp1286I GDGCHC 3 cut(s) 95, 428, 438
Bsp143I GATC 5 cut(s) 60, 163, 399, 691, 912
BspANI GGCC 6 cut(s) 75, 84, 275, 426, 550, 617
BspCNI CTCAG 1 cut(s) 406
BspFNI CGCG 4 cut(s) 81, 413, 604, 704
BspHI TCATGA 1 cut(s) 610
BspLI GGNNCC 6 cut(s) 94, 364, 426, 631, 905, 940
BspPI GGATC 1 cut(s) 394
BspT107I GGYRCC 2 cut(s) 629, 938
BsrBI CCGCTC 1 cut(s) 657
BsrDI GCAATG 1 cut(s) 456
BsrFI RCCGGY 2 cut(s) 71, 470
BsrI ACTGG 1 cut(s) 515
BssAI RCCGGY 2 cut(s) 71, 470
BssECI CCNNGG 5 cut(s) 79, 121, 358, 618, 860
BssMI GATC 5 cut(s) 60, 163, 399, 691, 912
BssNI GRCGYC 4 cut(s) 183, 321, 339, 630
BssT1I CCWWGG 2 cut(s) 121, 618
Bst2UI CCWGG 3 cut(s) 86, 488, 862
Bst4CI ACNGT 1 cut(s) 731
Bst6I CTCTTC 1 cut(s) 359
BstACI GRCGYC 4 cut(s) 183, 321, 339, 630
BstBAI YACGTR 2 cut(s) 583, 685
BstC8I GCNNGC 6 cut(s) 73, 110, 472, 530, 591, 888
BstDEI CTNAG 4 cut(s) 43, 393, 843, 909
BstDSI CCRYGG 1 cut(s) 79
BstENI CCTNNNNNAGG 1 cut(s) 923
BstF5I GGATG 3 cut(s) 520, 694, 856
BstFNI CGCG 4 cut(s) 81, 413, 604, 704
BstH2I RGCGCY 1 cut(s) 633
BstHHI GCGC 2 cut(s) 415, 632
BstKTI GATC 5 cut(s) 63, 166, 402, 694, 915
BstMBI GATC 5 cut(s) 60, 163, 399, 691, 912
BstMCI CGRYCG 1 cut(s) 276
BstMWI GCNNNNNNNGC 4 cut(s) 81, 90, 369, 467
BstNI CCWGG 3 cut(s) 86, 488, 862
BstNSI RCATGY 2 cut(s) 532, 746
BstPAI GACNNNNGTC 1 cut(s) 311
BstSCI CCNGG 4 cut(s) 84, 402, 486, 860
BstSLI GKGCMC 1 cut(s) 428
BstUI CGCG 4 cut(s) 81, 413, 604, 704
BstV1I GCAGC 1 cut(s) 573
BstX2I RGATCY 2 cut(s) 60, 912
BstXI CCANNNNNNTGG 1 cut(s) 640
BstYI RGATCY 2 cut(s) 60, 912
BstZI CGGCCG 1 cut(s) 273
BsuRI GGCC 6 cut(s) 75, 84, 275, 426, 550, 617
BtgI CCRYGG 1 cut(s) 79
BtgZI GCGATG 1 cut(s) 268
BtsCI GGATG 3 cut(s) 520, 694, 856
BtsIMutI CAGTG 1 cut(s) 736
Cac8I GCNNGC 6 cut(s) 73, 110, 472, 530, 591, 888
CciI TCATGA 1 cut(s) 610
CfoI GCGC 2 cut(s) 415, 632
Cfr10I RCCGGY 2 cut(s) 71, 470
Cfr13I GGNCC 4 cut(s) 424, 425, 548, 903
Cfr42I CCGCGG 1 cut(s) 82
CseI GACGC 4 cut(s) 328, 329, 610, 710
Csp6I GTAC 4 cut(s) 451, 505, 939, 952
CviAII CATG 5 cut(s) 152, 529, 611, 743, 871
CviQI GTAC 4 cut(s) 451, 505, 939, 952
DdeI CTNAG 4 cut(s) 43, 393, 843, 909
DinI GGCGCC 1 cut(s) 631
DpnI GATC 5 cut(s) 62, 165, 401, 693, 914
DpnII GATC 5 cut(s) 60, 163, 399, 691, 912
DriI GACNNNNNGTC 1 cut(s) 187
EaeI YGGCCR 2 cut(s) 73, 273
EagI CGGCCG 1 cut(s) 273
Eam1104I CTCTTC 1 cut(s) 359
Eam1105I GACNNNNNGTC 1 cut(s) 187
EarI CTCTTC 1 cut(s) 359
EciI GGCGGA 2 cut(s) 85, 803
EclXI CGGCCG 1 cut(s) 273
Eco130I CCWWGG 2 cut(s) 121, 618
Eco24I GRGCYC 3 cut(s) 95, 428, 438
Eco47I GGWCC 1 cut(s) 903
Eco52I CGGCCG 1 cut(s) 273
Eco72I CACGTG 2 cut(s) 583, 685
Eco88I CYCGRG 2 cut(s) 431, 569
EcoNI CCTNNNNNAGG 1 cut(s) 923
EcoRI GAATTC 1 cut(s) 574
EcoRII CCWGG 3 cut(s) 84, 486, 860
EcoT14I CCWWGG 2 cut(s) 121, 618
EcoT38I GRGCYC 3 cut(s) 95, 428, 438
EgeI GGCGCC 1 cut(s) 631
EheI GGCGCC 1 cut(s) 631
ErhI CCWWGG 2 cut(s) 121, 618
FaeI CATG 5 cut(s) 155, 532, 614, 746, 874
FaiI YATR 5 cut(s) 153, 530, 612, 744, 872
FalI AAGNNNNNCTT 6 cut(s) 338, 370, 810, 842, 938, 970
FaqI GGGAC 1 cut(s) 848
FatI CATG 5 cut(s) 151, 528, 610, 742, 870
FauI CCCGC 2 cut(s) 179, 883
Fnu4HI GCNGC 6 cut(s) 82, 201, 231, 234, 551, 587
FokI GGATG 3 cut(s) 527, 701, 863
FriOI GRGCYC 3 cut(s) 95, 428, 438
Fsp4HI GCNGC 6 cut(s) 82, 201, 231, 234, 551, 587
FspBI CTAG 1 cut(s) 122
GlaI GCGC 2 cut(s) 414, 631
GluI GCNGC 6 cut(s) 82, 201, 231, 234, 551, 587
HaeII RGCGCY 1 cut(s) 633
HaeIII GGCC 6 cut(s) 75, 84, 275, 426, 550, 617
HapII CCGG 5 cut(s) 72, 272, 404, 471, 525
HgaI GACGC 4 cut(s) 328, 329, 610, 710
HhaI GCGC 2 cut(s) 415, 632
Hin1I GRCGYC 4 cut(s) 183, 321, 339, 630
Hin1II CATG 5 cut(s) 155, 532, 614, 746, 874
Hin6I GCGC 2 cut(s) 413, 630
HinP1I GCGC 2 cut(s) 413, 630
HindIII AAGCTT 1 cut(s) 884
HinfI GANTC 2 cut(s) 188, 836
HpaII CCGG 5 cut(s) 72, 272, 404, 471, 525
HphI GGTGA 2 cut(s) 121, 160
Hpy188III TCNNGA 6 cut(s) 304, 343, 418, 478, 611, 715
Hpy99I CGWCG 5 cut(s) 71, 185, 188, 323, 704
HpyAV CCTTC 4 cut(s) 42, 46, 202, 757
HpyCH4III ACNGT 1 cut(s) 731
HpyCH4IV ACGT 4 cut(s) 183, 312, 582, 684
HpyCH4V TGCA 2 cut(s) 372, 682
HpyF10VI GCNNNNNNNGC 4 cut(s) 81, 90, 369, 467
HpyF3I CTNAG 4 cut(s) 43, 393, 843, 909
HpySE526I ACGT 4 cut(s) 183, 312, 582, 684
Hsp92I GRCGYC 4 cut(s) 183, 321, 339, 630
Hsp92II CATG 5 cut(s) 155, 532, 614, 746, 874
HspAI GCGC 2 cut(s) 413, 630
KasI GGCGCC 1 cut(s) 629
KpnI GGTACC 1 cut(s) 942
KroI GCCGGC 2 cut(s) 71, 470
KroNI GCCGGC 2 cut(s) 73, 472
KspI CCGCGG 1 cut(s) 82
Kzo9I GATC 5 cut(s) 60, 163, 399, 691, 912
LmnI GCTCC 7 cut(s) 98, 117, 354, 368, 654, 739, 884
Lsp1109I GCAGC 1 cut(s) 573
LweI GCATC 4 cut(s) 10, 381, 483, 505
MaeI CTAG 1 cut(s) 122
MaeII ACGT 4 cut(s) 183, 312, 582, 684
MaeIII GTNAC 2 cut(s) 725, 769
MalI GATC 5 cut(s) 62, 165, 401, 693, 914
MbiI CCGCTC 1 cut(s) 657
MboI GATC 5 cut(s) 60, 163, 399, 691, 912
MboII GAAGA 4 cut(s) 31, 55, 187, 346
MflI RGATCY 2 cut(s) 60, 912
MhlI GDGCHC 3 cut(s) 95, 428, 438
MluCI AATT 3 cut(s) 215, 574, 791
Mly113I GGCGCC 1 cut(s) 630
MlyI GAGTC 2 cut(s) 197, 830
MmeI TCCRAC 2 cut(s) 717, 881
MroNI GCCGGC 2 cut(s) 71, 470
MseI TTAA 1 cut(s) 798
MslI CAYNNNNRTG 3 cut(s) 479, 687, 747
MspA1I CMGCKG 1 cut(s) 81
MspI CCGG 5 cut(s) 72, 272, 404, 471, 525
MspR9I CCNGG 4 cut(s) 86, 404, 488, 862
Mva1269I GAATGC 3 cut(s) 249, 498, 967
MvaI CCWGG 3 cut(s) 86, 488, 862
MvnI CGCG 4 cut(s) 81, 413, 604, 704
MwoI GCNNNNNNNGC 4 cut(s) 81, 90, 369, 467
NaeI GCCGGC 2 cut(s) 73, 472
NarI GGCGCC 1 cut(s) 630
NciI CCSGG 1 cut(s) 404
NdeII GATC 5 cut(s) 60, 163, 399, 691, 912
NgoMIV GCCGGC 2 cut(s) 71, 470
NlaIII CATG 5 cut(s) 155, 532, 614, 746, 874
NlaIV GGNNCC 6 cut(s) 94, 364, 426, 631, 905, 940
NmeAIII GCCGAG 1 cut(s) 339
NmuCI GTSAC 1 cut(s) 769
NspI RCATGY 2 cut(s) 532, 746
PaeI GCATGC 1 cut(s) 532
PaeR7I CTCGAG 1 cut(s) 431
PagI TCATGA 1 cut(s) 610
PctI GAATGC 3 cut(s) 249, 498, 967
PdiI GCCGGC 2 cut(s) 73, 472
PflMI CCANNNNNTGG 1 cut(s) 447
PfoI TCCNGGA 1 cut(s) 402
PkrI GCNGC 6 cut(s) 83, 202, 232, 235, 552, 588
PleI GAGTC 2 cut(s) 196, 830
PluTI GGCGCC 1 cut(s) 633
PmaCI CACGTG 2 cut(s) 583, 685
PmlI CACGTG 2 cut(s) 583, 685
PpsI GAGTC 2 cut(s) 196, 830
Ppu21I YACGTR 2 cut(s) 583, 685
PshAI GACNNNNGTC 1 cut(s) 311
Psp6I CCWGG 3 cut(s) 84, 486, 860
PspCI CACGTG 2 cut(s) 583, 685
PspGI CCWGG 3 cut(s) 84, 486, 860
PspN4I GGNNCC 6 cut(s) 94, 364, 426, 631, 905, 940
PspOMI GGGCCC 1 cut(s) 424
PspPI GGNCC 4 cut(s) 424, 425, 548, 903
PspXI VCTCGAGB 1 cut(s) 431
PsuI RGATCY 2 cut(s) 60, 912
RsaI GTAC 4 cut(s) 452, 506, 940, 953
RsaNI GTAC 4 cut(s) 451, 505, 939, 952
RseI CAYNNNNRTG 3 cut(s) 479, 687, 747
SacII CCGCGG 1 cut(s) 82
SaqAI TTAA 1 cut(s) 798
SatI GCNGC 6 cut(s) 82, 201, 231, 234, 551, 587
Sau3AI GATC 5 cut(s) 60, 163, 399, 691, 912
Sau96I GGNCC 4 cut(s) 424, 425, 548, 903
SchI GAGTC 2 cut(s) 197, 830
ScrFI CCNGG 4 cut(s) 86, 404, 488, 862
SduI GDGCHC 3 cut(s) 95, 428, 438
SfaNI GCATC 4 cut(s) 10, 381, 483, 505
SfiI GGCCNNNNNGGCC 1 cut(s) 81
SfoI GGCGCC 1 cut(s) 631
Sfr274I CTCGAG 1 cut(s) 431
Sfr303I CCGCGG 1 cut(s) 82
SgrBI CCGCGG 1 cut(s) 82
SinI GGWCC 1 cut(s) 903
SlaI CTCGAG 1 cut(s) 431
SmiMI CAYNNNNRTG 3 cut(s) 479, 687, 747
SmlI CTYRAG 3 cut(s) 431, 667, 920
SmoI CTYRAG 3 cut(s) 431, 667, 920
SphI GCATGC 1 cut(s) 532
Sse9I AATT 3 cut(s) 215, 574, 791
SspDI GGCGCC 1 cut(s) 629
SspMI CTAG 1 cut(s) 122
StyD4I CCNGG 4 cut(s) 84, 402, 486, 860
StyI CCWWGG 2 cut(s) 121, 618
TaaI ACNGT 1 cut(s) 731
TaiI ACGT 4 cut(s) 186, 315, 585, 687
TaqI TCGA 4 cut(s) 162, 186, 318, 432
TasI AATT 3 cut(s) 215, 574, 791
TatI WGTACW 1 cut(s) 504
TauI GCSGC 5 cut(s) 84, 203, 233, 236, 553
Tru1I TTAA 1 cut(s) 798
Tru9I TTAA 1 cut(s) 798
TscAI CASTG 1 cut(s) 736
TseFI GTSAC 1 cut(s) 769
TseI GCWGC 1 cut(s) 586
Tsp45I GTSAC 1 cut(s) 769
TspDTI ATGAA 2 cut(s) 271, 599
TspRI CASTG 1 cut(s) 736
Van91I CCANNNNNTGG 1 cut(s) 447
VpaK11BI GGWCC 1 cut(s) 903
XagI CCTNNNNNAGG 1 cut(s) 923
XapI RAATTY 1 cut(s) 574
XceI RCATGY 2 cut(s) 532, 746
XcmI CCANNNNNNNNNTGG 2 cut(s) 640, 868
XhoI CTCGAG 1 cut(s) 431
XmaJI CCTAGG 1 cut(s) 121
XspI CTAG 1 cut(s) 122
ZraI GACGTC 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.