AT1G17940

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004447
Physical Location & Seq
Reverse (-)
6169285 .. 6173273
3989 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G17940.2

Sequence Viewer

Length: 1218 bp
ATGGGATGCTTTGCGTCAACGCCGAAAGACTCAGGTGGGAACAGAAGAAAGCCAACAAGCATCGGTGAGGTTTCAGTATATGTACCTGGTTTAAGGATACCCAGAGCGGTGGATTTTTTGCAGTCACTTGGTGATCAATTACCGAAGACTTTAGTGGAACGCTTGACAGCTTTAAGAACGCGTATAGTAGTGATGGCTAATCAAGAAGGACCTACAATTACGAGAACTAGGAGAAAGACACAACATGGAGGTTCAACGCTCTTGGATCTCCATCAAGCTTTGCTAGATTATCTACCTGTTGTCTTGGGATTAACTAAAGATGGTAGCCATCTACAGTTTAAAGTGCAATTTAATTGGGTAAATCAGGAGGATGAGGAAGAGGAAACAGAGATGTCAAACGTTTGGTATGAAGTTTTATCTGTTTTGCATCTAATGGCAATGCTACAAATGTCTCAAGCCAATTTACTGCTTCTTCCTAGAGGTTCTAGTGATGGTCACAATCATCCGAAAGTATCCGAAGAAAACAGACGAACTTCGATTGATATCTTCTTAAAAGCAGCTGGATATCTTGATTGTGCCGTTAAGCATGTTCTCCCCCAGTTTTCTGCTGAGCAAAGGAGAAGTTTACCAGTTGACTTAGCAGAAGGAACTCTACGGGCTCTTTGCTTGCAAGCACTTGGCCAGGGTGTTGATATCCAACTTGGCATGGCGATTGATAGCTCAAAGGCCACTCTTGCAGTAAAACGAAGACTTTCATGTGAAATGGTGAAATATTGGCAGCAGGCACAAGATAATTTAATGAATCTCCCGTTAGCAAATGGTTGGGGAGAAAAGCATGGACTCTTTGTTAAGTGGAAGTATGTTGAAGCTAAGGCTGCGGCTTACTACTATCATGGTTTGATTCTTGATGAAGGAAACACAGAGAAGTCACATGGCATGGCAGTTGCTGCTTTACAAGCTGCAGATGAATGTTTCAAAGAAAGTAAGAAAGCATCCGAAGCATTCAACGCCTCTGCGCCTACTTCAAGAACACCGCCCCTCTTTGGAACAATGAAATATCTAACTGAGAAAATCCCGAAAGATACTTCGAGTAAAGTCAGGATAAACCGTGATCTCTACTCCTATGAAAAAATCATGGAGACAGCACCAACACTTCCTGATTTCGCTTTGGCATTGAAACCAGATGAGTATCAACTTCCACTCGCCGAAGCTTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRO1

Protein Analysis

405

Amino Acids

45.08

Weight (kDa)

7.15

Isoelectric Point (pI)

41.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRO1 PF03097 94 - 272 4.3e-08 BRO1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 107
AccII CGCG 1 cut(s) 181
AciI CCGC 3 cut(s) 107, 878, 1034
AclI AACGTT 1 cut(s) 399
AclWI GGATC 1 cut(s) 273
AcoI YGGCCR 1 cut(s) 679
AdeI CACNNNGTG 1 cut(s) 131
AfaI GTAC 1 cut(s) 84
AfiI CCNNNNNNNGG 1 cut(s) 1043
AflIII ACRYGT 1 cut(s) 179
AgsI TTSAA 6 cut(s) 255, 866, 976, 1006, 1026, 1177
AjnI CCWGG 2 cut(s) 85, 681
AluBI AGCT 7 cut(s) 170, 278, 560, 720, 869, 959, 1211
AluI AGCT 7 cut(s) 170, 278, 560, 720, 869, 959, 1211
Alw26I GTCTC 2 cut(s) 456, 1133
AlwI GGATC 1 cut(s) 273
AlwNI CAGNNNCTG 1 cut(s) 947
AoxI GGCC 2 cut(s) 679, 726
ApeKI GCWGC 5 cut(s) 557, 778, 875, 947, 959
Asp700I GAANNNNTTC 1 cut(s) 751
AspLEI GCGC 1 cut(s) 1018
AspS9I GGNCC 1 cut(s) 209
AsuHPI GGTGA 3 cut(s) 77, 143, 778
AvaII GGWCC 1 cut(s) 209
BalI TGGCCA 1 cut(s) 681
BanII GRGCYC 1 cut(s) 661
BarI GAAGNNNNNNTAC 2 cut(s) 636, 668
BbsI GAAGAC 2 cut(s) 152, 754
BbvI GCAGC 5 cut(s) 569, 790, 862, 934, 946
BccI CCATC 5 cut(s) 187, 279, 314, 336, 485
BceAI ACGGC 1 cut(s) 563
BciT130I CCWGG 2 cut(s) 87, 683
BciVI GTATCC 2 cut(s) 90, 523
BclI TGATCA 1 cut(s) 133
BcoDI GTCTC 2 cut(s) 456, 1133
BfaI CTAG 4 cut(s) 228, 284, 477, 486
BfmI CTRYAG 2 cut(s) 332, 960
BfuI GTATCC 2 cut(s) 90, 523
BisI GCNGC 6 cut(s) 558, 779, 876, 879, 948, 960
BlpI GCTNAGC 1 cut(s) 609
BlsI GCNGC 6 cut(s) 559, 780, 877, 880, 949, 961
Bme1390I CCNGG 2 cut(s) 87, 683
Bme18I GGWCC 1 cut(s) 209
BmgT120I GGNCC 1 cut(s) 209
BmrFI CCNGG 2 cut(s) 87, 683
BmrI ACTGGG 1 cut(s) 592
BmsI GCATC 3 cut(s) 69, 436, 1001
BmuI ACTGGG 1 cut(s) 592
BpiI GAAGAC 2 cut(s) 152, 754
Bpu10I CCTNAGC 1 cut(s) 870
Bpu1102I GCTNAGC 1 cut(s) 609
BpuEI CTTGAG 1 cut(s) 438
BsaBI GATNNNNATC 3 cut(s) 270, 542, 1188
BsaJI CCNNGG 1 cut(s) 682
Bsc4I CCNNNNNNNGG 1 cut(s) 1043
Bse1I ACTGG 2 cut(s) 598, 629
Bse3DI GCAATG 1 cut(s) 444
Bse8I GATNNNNATC 3 cut(s) 270, 542, 1188
BseBI CCWGG 2 cut(s) 87, 683
BseDI CCNNGG 1 cut(s) 682
BseGI GGATG 4 cut(s) 11, 376, 502, 992
BseJI GATNNNNATC 3 cut(s) 270, 542, 1188
BseLI CCNNNNNNNGG 1 cut(s) 1043
BseMI GCAATG 1 cut(s) 444
BseMII CTCAG 3 cut(s) 45, 600, 1056
BseNI ACTGG 2 cut(s) 598, 629
BseXI GCAGC 5 cut(s) 569, 790, 862, 934, 946
Bsh1236I CGCG 1 cut(s) 181
BshFI GGCC 2 cut(s) 681, 728
BslI CCNNNNNNNGG 1 cut(s) 1043
BsmAI GTCTC 2 cut(s) 456, 1133
BsmI GAATGC 1 cut(s) 1001
BsnI GGCC 2 cut(s) 681, 728
Bsp1286I GDGCHC 1 cut(s) 661
Bsp143I GATC 3 cut(s) 133, 265, 1111
Bsp1720I GCTNAGC 1 cut(s) 609
BspACI CCGC 3 cut(s) 107, 878, 1034
BspANI GGCC 2 cut(s) 681, 728
BspCNI CTCAG 3 cut(s) 44, 601, 1057
BspFNI CGCG 1 cut(s) 181
BspMAI CTGCAG 1 cut(s) 964
BspPI GGATC 1 cut(s) 273
BsrBI CCGCTC 1 cut(s) 107
BsrDI GCAATG 1 cut(s) 444
BsrI ACTGG 2 cut(s) 598, 629
BssECI CCNNGG 1 cut(s) 682
BssMI GATC 3 cut(s) 133, 265, 1111
Bst2UI CCWGG 2 cut(s) 87, 683
Bst4CI ACNGT 2 cut(s) 336, 1109
Bst6I CTCTTC 1 cut(s) 372
BstAPI GCANNNNNTGC 1 cut(s) 947
BstC8I GCNNGC 3 cut(s) 668, 672, 783
BstDEI CTNAG 5 cut(s) 31, 609, 637, 870, 1065
BstF5I GGATG 4 cut(s) 11, 376, 502, 992
BstFNI CGCG 1 cut(s) 181
BstHHI GCGC 1 cut(s) 1018
BstKTI GATC 3 cut(s) 136, 268, 1114
BstMAI GTCTC 2 cut(s) 456, 1133
BstMBI GATC 3 cut(s) 133, 265, 1111
BstMWI GCNNNNNNNGC 6 cut(s) 734, 875, 947, 956, 998, 1007
BstNI CCWGG 2 cut(s) 87, 683
BstNSI RCATGY 1 cut(s) 590
BstSCI CCNGG 2 cut(s) 85, 681
BstSFI CTRYAG 2 cut(s) 332, 960
BstUI CGCG 1 cut(s) 181
BstV1I GCAGC 5 cut(s) 569, 790, 862, 934, 946
BstV2I GAAGAC 2 cut(s) 152, 754
BstX2I RGATCY 1 cut(s) 265
BstXI CCANNNNNNTGG 1 cut(s) 109
BstYI RGATCY 1 cut(s) 265
BsuI GTATCC 2 cut(s) 90, 523
BsuRI GGCC 2 cut(s) 681, 728
BtsCI GGATG 4 cut(s) 11, 376, 502, 992
Cac8I GCNNGC 3 cut(s) 668, 672, 783
CaiI CAGNNNCTG 1 cut(s) 947
CfoI GCGC 1 cut(s) 1018
Cfr13I GGNCC 1 cut(s) 209
CseI GACGC 1 cut(s) 3
CsiI ACCWGGT 1 cut(s) 85
Csp6I GTAC 1 cut(s) 83
CviAII CATG 9 cut(s) 245, 587, 706, 756, 836, 893, 932, 937, 1135
CviQI GTAC 1 cut(s) 83
DdeI CTNAG 5 cut(s) 31, 609, 637, 870, 1065
DpnI GATC 3 cut(s) 135, 267, 1113
DpnII GATC 3 cut(s) 133, 265, 1111
DraI TTTAAA 1 cut(s) 340
DraIII CACNNNGTG 1 cut(s) 131
EaeI YGGCCR 1 cut(s) 679
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
Eco24I GRGCYC 1 cut(s) 661
Eco32I GATATC 3 cut(s) 544, 566, 694
Eco47I GGWCC 1 cut(s) 209
EcoO109I RGGNCCY 1 cut(s) 209
EcoRII CCWGG 2 cut(s) 85, 681
EcoRV GATATC 3 cut(s) 544, 566, 694
EcoT38I GRGCYC 1 cut(s) 661
FaeI CATG 9 cut(s) 248, 590, 709, 759, 839, 896, 935, 940, 1138
FatI CATG 9 cut(s) 244, 586, 705, 755, 835, 892, 931, 936, 1134
FbaI TGATCA 1 cut(s) 133
Fnu4HI GCNGC 6 cut(s) 558, 779, 876, 879, 948, 960
FokI GGATG 4 cut(s) 18, 383, 489, 979
FriOI GRGCYC 1 cut(s) 661
Fsp4HI GCNGC 6 cut(s) 558, 779, 876, 879, 948, 960
FspBI CTAG 4 cut(s) 228, 284, 477, 486
GlaI GCGC 1 cut(s) 1017
GluI GCNGC 6 cut(s) 558, 779, 876, 879, 948, 960
HaeIII GGCC 2 cut(s) 681, 728
HgaI GACGC 1 cut(s) 3
HhaI GCGC 1 cut(s) 1018
Hin1II CATG 9 cut(s) 248, 590, 709, 759, 839, 896, 935, 940, 1138
Hin6I GCGC 1 cut(s) 1016
HinP1I GCGC 1 cut(s) 1016
HincII GTYRAC 2 cut(s) 18, 634
HindII GTYRAC 2 cut(s) 18, 634
HindIII AAGCTT 2 cut(s) 276, 1209
HinfI GANTC 4 cut(s) 29, 802, 840, 901
HphI GGTGA 3 cut(s) 77, 143, 778
Hpy166II GTNNAC 3 cut(s) 18, 626, 634
Hpy188I TCNGA 3 cut(s) 507, 517, 997
Hpy188III TCNNGA 8 cut(s) 203, 365, 569, 905, 1026, 1075, 1099, 1157
Hpy8I GTNNAC 3 cut(s) 18, 626, 634
HpyAV CCTTC 3 cut(s) 200, 638, 905
HpyCH4III ACNGT 2 cut(s) 336, 1109
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 6 cut(s) 121, 346, 427, 670, 737, 962
HpyF10VI GCNNNNNNNGC 6 cut(s) 734, 875, 947, 956, 998, 1007
HpyF3I CTNAG 5 cut(s) 31, 609, 637, 870, 1065
HpySE526I ACGT 1 cut(s) 399
Hsp92II CATG 9 cut(s) 248, 590, 709, 759, 839, 896, 935, 940, 1138
HspAI GCGC 1 cut(s) 1016
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 3 cut(s) 133, 265, 1111
Lsp1109I GCAGC 5 cut(s) 569, 790, 862, 934, 946
LweI GCATC 3 cut(s) 69, 436, 1001
MabI ACCWGGT 1 cut(s) 85
MaeI CTAG 4 cut(s) 228, 284, 477, 486
MaeII ACGT 1 cut(s) 399
MaeIII GTNAC 3 cut(s) 123, 494, 927
MalI GATC 3 cut(s) 135, 267, 1113
MbiI CCGCTC 1 cut(s) 107
MboI GATC 3 cut(s) 133, 265, 1111
MboII GAAGA 7 cut(s) 57, 157, 389, 464, 530, 538, 759
MflI RGATCY 1 cut(s) 265
MhlI GDGCHC 1 cut(s) 661
MlsI TGGCCA 1 cut(s) 681
MluCI AATT 6 cut(s) 137, 216, 347, 352, 460, 793
MluI ACGCGT 1 cut(s) 179
MluNI TGGCCA 1 cut(s) 681
MlyI GAGTC 2 cut(s) 23, 834
MmeI TCCRAC 1 cut(s) 721
MnlI CCTC 8 cut(s) 61, 242, 361, 367, 373, 473, 1021, 1049
Mox20I TGGCCA 1 cut(s) 681
MroXI GAANNNNTTC 1 cut(s) 751
MscI TGGCCA 1 cut(s) 681
MseI TTAA 9 cut(s) 92, 173, 311, 339, 351, 551, 582, 797, 849
Msp20I TGGCCA 1 cut(s) 681
MspA1I CMGCKG 1 cut(s) 560
MspR9I CCNGG 2 cut(s) 87, 683
Mva1269I GAATGC 1 cut(s) 1001
MvaI CCWGG 2 cut(s) 87, 683
MvnI CGCG 1 cut(s) 181
MwoI GCNNNNNNNGC 6 cut(s) 734, 875, 947, 956, 998, 1007
NdeII GATC 3 cut(s) 133, 265, 1111
NlaIII CATG 9 cut(s) 248, 590, 709, 759, 839, 896, 935, 940, 1138
NmuCI GTSAC 3 cut(s) 123, 494, 927
NspI RCATGY 1 cut(s) 590
PctI GAATGC 1 cut(s) 1001
PdmI GAANNNNTTC 1 cut(s) 751
PfeI GAWTC 2 cut(s) 802, 901
PkrI GCNGC 6 cut(s) 559, 780, 877, 880, 949, 961
PleI GAGTC 2 cut(s) 23, 834
PpsI GAGTC 2 cut(s) 23, 834
PpuMI RGGWCCY 1 cut(s) 209
Psp1406I AACGTT 1 cut(s) 399
Psp5II RGGWCCY 1 cut(s) 209
Psp6I CCWGG 2 cut(s) 85, 681
PspGI CCWGG 2 cut(s) 85, 681
PspPI GGNCC 1 cut(s) 209
PspPPI RGGWCCY 1 cut(s) 209
PstI CTGCAG 1 cut(s) 964
PstNI CAGNNNCTG 1 cut(s) 947
PsuI RGATCY 1 cut(s) 265
PvuII CAGCTG 1 cut(s) 560
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
SaqAI TTAA 9 cut(s) 92, 173, 311, 339, 351, 551, 582, 797, 849
SatI GCNGC 6 cut(s) 558, 779, 876, 879, 948, 960
Sau3AI GATC 3 cut(s) 133, 265, 1111
Sau96I GGNCC 1 cut(s) 209
SchI GAGTC 2 cut(s) 23, 834
ScrFI CCNGG 2 cut(s) 87, 683
SduI GDGCHC 1 cut(s) 661
SexAI ACCWGGT 1 cut(s) 85
SfaNI GCATC 3 cut(s) 69, 436, 1001
SfcI CTRYAG 2 cut(s) 332, 960
SinI GGWCC 1 cut(s) 209
SmlI CTYRAG 1 cut(s) 453
SmoI CTYRAG 1 cut(s) 453
Sse9I AATT 6 cut(s) 137, 216, 347, 352, 460, 793
SsiI CCGC 3 cut(s) 107, 878, 1034
SspI AATATT 1 cut(s) 773
SspMI CTAG 4 cut(s) 228, 284, 477, 486
StyD4I CCNGG 2 cut(s) 85, 681
TaaI ACNGT 2 cut(s) 336, 1109
TaiI ACGT 1 cut(s) 402
TaqI TCGA 2 cut(s) 536, 1088
TasI AATT 6 cut(s) 137, 216, 347, 352, 460, 793
TauI GCSGC 1 cut(s) 881
TfiI GAWTC 2 cut(s) 802, 901
Tru1I TTAA 9 cut(s) 92, 173, 311, 339, 351, 551, 582, 797, 849
Tru9I TTAA 9 cut(s) 92, 173, 311, 339, 351, 551, 582, 797, 849
TseFI GTSAC 3 cut(s) 123, 494, 927
TseI GCWGC 5 cut(s) 557, 778, 875, 947, 959
Tsp45I GTSAC 3 cut(s) 123, 494, 927
TspDTI ATGAA 7 cut(s) 423, 744, 815, 924, 981, 1067, 1140
VpaK11BI GGWCC 1 cut(s) 209
XceI RCATGY 1 cut(s) 590
XmnI GAANNNNTTC 1 cut(s) 751
XspI CTAG 4 cut(s) 228, 284, 477, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.