AT1G73390

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004447
Physical Location & Seq
Reverse (-)
27590810 .. 27595752
4943 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G73390.2

Sequence Viewer

Length: 1260 bp
ATGGGATGCTTTGCATCAAGGCCGAATGATACTGGTGGAAACAGAAGAAAGCCAACGAGCATCGGAGATGTTTCAGTATATGTACCTGGTTTAAGGATACCTAAGCCCGTGGAGTTTTCTCAGTCACTGGGTGATCAATTGCCAAAGACTCTAGTGGAGCGCTTGACAGCTTTAAGAACGAGAATAGTTGTGATGGCAAATCAAGAAGGACCAACTATAACAAGAACCAGGAGGAAGACACAGCATGGAGGTTCTACGCTCGCAGATCTCCATCACGCTTTGGAAGATTATATACCGGTTCTCTTAGGATTAACTAAAGATGGTAGCCATTTACAATTCAAAGTACAGTTTAATTGGGTAAATCAGGAAGATGAAGAAGAGGAAACAGCCATGTCAAATGTTTGGTATGAAATATTGTCGGTTTTGCATCTAATGGCAATGTTACAAATGTCACAAGCCAATTTACTGCTTCTTCCTAGAGGTTCCAGTGATGGCTATCATCCAAAAATATCAGAAGAAAATAGGCGAGCTTCAATCGATATCTTCTTAAAAGCAGCTGGATACCTGGACTGTGCTGTGAAGCATGTTCTTCCTCATTTTTCAACCGAGCAGAGGAGAAGTTTACCAATTGACCTAGCAGAAGGAGCTTTACGTGCACTTTGCTTGCAAGCATTAGGCCAGGGTGTTGATATCCAACTTGGGATGGCGATTGATAGTGCAAAAGCCACTCTTGCCGTGAAGCGAAGACTTTCATGTGAAATGGTGAAATACTGGCAGCAGGCACAAGATAACTTAATGAATCTTCCATTAGCAAACGGGTGGGGCGAAAAGCATATGCTCTTTGTTAAGTGGAAGTATGTTGAAGCTAAGGCTGCAGCTTACTACTACCACGGTCTGATTCTTGATGAAGGAAATACAGAGAAATCACATGGCATGGCGGTTGCTGCTTTACAGGCTGCAGATGAGTGTTTGAAAGAAAGTAAGAAAGCAAGTGAGGCGTTTAACACCTCTTCACCCACGTCAAGGACTCCTTCACTTTTCGGGACAATGAAATATCTATCAGAGAAAATACCAAAAGAAACTTCAAGTAAAGTCAGGATAAACCGTGATCTATACTCTTATGAAAAGATCATGGAGACAGCACCAACGCTTCCTGATTTTGCCTTGGCATTGAAACCCGATGAGTACCAACTTCCTTCTGTTGATGCGTCATGGTCTGAAGCCAGTCTACGGACTAAAAACACATCAAATCACATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRO1

Protein Analysis

419

Amino Acids

46.75

Weight (kDa)

7.68

Isoelectric Point (pI)

44.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRO1 PF03097 110 - 332 1.2e-15 BRO1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1228
AciI CCGC 1 cut(s) 938
AcuI CTGAAG 1 cut(s) 1239
AdeI CACNNNGTG 1 cut(s) 131
AfaI GTAC 3 cut(s) 84, 345, 1187
AfeI AGCGCT 1 cut(s) 161
AfiI CCNNNNNNNGG 3 cut(s) 612, 1023, 1230
AgeI ACCGGT 1 cut(s) 295
AgsI TTSAA 7 cut(s) 340, 534, 603, 863, 973, 1086, 1174
AjiI CACGTC 1 cut(s) 1020
AjnI CCWGG 4 cut(s) 85, 227, 564, 678
AjuI GAANNNNNNNTTGG 2 cut(s) 1066, 1098
AluBI AGCT 6 cut(s) 170, 530, 557, 647, 866, 878
AluI AGCT 6 cut(s) 170, 530, 557, 647, 866, 878
Alw21I GWGCWC 1 cut(s) 658
Alw26I GTCTC 1 cut(s) 1130
Alw44I GTGCAC 1 cut(s) 654
AlwNI CAGNNNCTG 1 cut(s) 127
Aor51HI AGCGCT 1 cut(s) 161
AoxI GGCC 2 cut(s) 20, 676
ApaLI GTGCAC 1 cut(s) 654
ApeKI GCWGC 6 cut(s) 554, 775, 872, 875, 944, 956
AsiGI ACCGGT 1 cut(s) 295
Asp700I GAANNNNTTC 1 cut(s) 748
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 209
AsuHPI GGTGA 3 cut(s) 143, 775, 1005
AvaII GGWCC 1 cut(s) 209
BaeGI GKGCMC 1 cut(s) 658
BarI GAAGNNNNNNTAC 6 cut(s) 276, 308, 633, 665, 1212, 1244
BbsI GAAGAC 2 cut(s) 242, 751
Bbv12I GWGCWC 1 cut(s) 658
BbvI GCAGC 6 cut(s) 566, 787, 859, 887, 931, 943
BccI CCATC 5 cut(s) 187, 279, 314, 485, 697
BceAI ACGGC 1 cut(s) 719
BciT130I CCWGG 4 cut(s) 87, 229, 566, 680
BciVI GTATCC 2 cut(s) 90, 554
BclI TGATCA 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 1130
BfaI CTAG 3 cut(s) 152, 477, 635
BfmI CTRYAG 2 cut(s) 873, 957
BfoI RGCGCY 1 cut(s) 163
BfuI GTATCC 2 cut(s) 90, 554
BglII AGATCT 1 cut(s) 265
BisI GCNGC 6 cut(s) 555, 776, 873, 876, 945, 957
BlsI GCNGC 6 cut(s) 556, 777, 874, 877, 946, 958
Bme1390I CCNGG 4 cut(s) 87, 229, 566, 680
Bme18I GGWCC 1 cut(s) 209
BmgBI CACGTC 1 cut(s) 1020
BmgT120I GGNCC 1 cut(s) 209
BmiI GGNNCC 1 cut(s) 484
BmrFI CCNGG 4 cut(s) 87, 229, 566, 680
BmrI ACTGGG 1 cut(s) 137
BmsI GCATC 4 cut(s) 23, 69, 436, 1195
BmuI ACTGGG 1 cut(s) 137
BpiI GAAGAC 2 cut(s) 242, 751
Bpu10I CCTNAGC 2 cut(s) 102, 867
Bsa29I ATCGAT 1 cut(s) 537
BsaAI YACGTR 1 cut(s) 653
BsaBI GATNNNNATC 2 cut(s) 270, 495
BsaJI CCNNGG 4 cut(s) 108, 679, 889, 1164
BsaWI WCCGGW 1 cut(s) 295
Bsc4I CCNNNNNNNGG 3 cut(s) 612, 1023, 1230
Bse118I RCCGGY 1 cut(s) 295
Bse1I ACTGG 5 cut(s) 37, 132, 486, 776, 1224
Bse3DI GCAATG 1 cut(s) 444
Bse8I GATNNNNATC 2 cut(s) 270, 495
BseBI CCWGG 4 cut(s) 87, 229, 566, 680
BseCI ATCGAT 1 cut(s) 537
BseDI CCNNGG 4 cut(s) 108, 679, 889, 1164
BseGI GGATG 3 cut(s) 11, 499, 708
BseJI GATNNNNATC 2 cut(s) 270, 495
BseLI CCNNNNNNNGG 3 cut(s) 612, 1023, 1230
BseMI GCAATG 1 cut(s) 444
BseMII CTCAG 1 cut(s) 134
BseNI ACTGG 5 cut(s) 37, 132, 486, 776, 1224
BseRI GAGGAG 1 cut(s) 628
BseSI GKGCMC 1 cut(s) 658
BseXI GCAGC 6 cut(s) 566, 787, 859, 887, 931, 943
BshFI GGCC 2 cut(s) 22, 678
BshTI ACCGGT 1 cut(s) 295
BshVI ATCGAT 1 cut(s) 537
BsiHKAI GWGCWC 1 cut(s) 658
BsiSI CCGG 1 cut(s) 296
BslFI GGGAC 1 cut(s) 1057
BslI CCNNNNNNNGG 3 cut(s) 612, 1023, 1230
BsmAI GTCTC 1 cut(s) 1130
BsmFI GGGAC 1 cut(s) 1057
BsnI GGCC 2 cut(s) 22, 678
Bsp1286I GDGCHC 1 cut(s) 658
Bsp143I GATC 4 cut(s) 133, 265, 1108, 1128
BspACI CCGC 1 cut(s) 938
BspANI GGCC 2 cut(s) 22, 678
BspCNI CTCAG 1 cut(s) 133
BspDI ATCGAT 1 cut(s) 537
BspLI GGNNCC 1 cut(s) 484
BspMAI CTGCAG 2 cut(s) 877, 961
BsrDI GCAATG 1 cut(s) 444
BsrFI RCCGGY 1 cut(s) 295
BsrI ACTGG 5 cut(s) 37, 132, 486, 776, 1224
BssAI RCCGGY 1 cut(s) 295
BssECI CCNNGG 4 cut(s) 108, 679, 889, 1164
BssMI GATC 4 cut(s) 133, 265, 1108, 1128
BssT1I CCWWGG 1 cut(s) 1164
Bst2UI CCWGG 4 cut(s) 87, 229, 566, 680
Bst4CI ACNGT 4 cut(s) 348, 572, 893, 1106
Bst6I CTCTTC 2 cut(s) 372, 1015
BstBAI YACGTR 1 cut(s) 653
BstC8I GCNNGC 5 cut(s) 261, 528, 665, 669, 780
BstDEI CTNAG 4 cut(s) 102, 120, 304, 867
BstDSI CCRYGG 2 cut(s) 108, 889
BstF5I GGATG 3 cut(s) 11, 499, 708
BstH2I RGCGCY 1 cut(s) 163
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 4 cut(s) 136, 268, 1111, 1131
BstMAI GTCTC 1 cut(s) 1130
BstMBI GATC 4 cut(s) 133, 265, 1108, 1128
BstMWI GCNNNNNNNGC 7 cut(s) 644, 653, 731, 872, 944, 953, 995
BstNI CCWGG 4 cut(s) 87, 229, 566, 680
BstNSI RCATGY 1 cut(s) 587
BstSCI CCNGG 4 cut(s) 85, 227, 564, 678
BstSFI CTRYAG 2 cut(s) 873, 957
BstSLI GKGCMC 1 cut(s) 658
BstV1I GCAGC 6 cut(s) 566, 787, 859, 887, 931, 943
BstV2I GAAGAC 2 cut(s) 242, 751
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
Bsu15I ATCGAT 1 cut(s) 537
BsuI GTATCC 2 cut(s) 90, 554
BsuRI GGCC 2 cut(s) 22, 678
BsuTUI ATCGAT 1 cut(s) 537
BtgI CCRYGG 2 cut(s) 108, 889
BtrI CACGTC 1 cut(s) 1020
BtsCI GGATG 3 cut(s) 11, 499, 708
BtsIMutI CAGTG 2 cut(s) 125, 493
Cac8I GCNNGC 5 cut(s) 261, 528, 665, 669, 780
CaiI CAGNNNCTG 1 cut(s) 127
CfoI GCGC 1 cut(s) 162
Cfr10I RCCGGY 1 cut(s) 295
Cfr13I GGNCC 1 cut(s) 209
ClaI ATCGAT 1 cut(s) 537
CseI GACGC 1 cut(s) 1197
CsiI ACCWGGT 1 cut(s) 85
Csp6I GTAC 3 cut(s) 83, 344, 1186
CspAI ACCGGT 1 cut(s) 295
CviAII CATG 8 cut(s) 245, 391, 584, 753, 929, 934, 1132, 1212
CviQI GTAC 3 cut(s) 83, 344, 1186
DdeI CTNAG 4 cut(s) 102, 120, 304, 867
DpnI GATC 4 cut(s) 135, 267, 1110, 1130
DpnII GATC 4 cut(s) 133, 265, 1108, 1128
DraIII CACNNNGTG 1 cut(s) 131
Eam1104I CTCTTC 2 cut(s) 372, 1015
EarI CTCTTC 2 cut(s) 372, 1015
Eco130I CCWWGG 1 cut(s) 1164
Eco32I GATATC 2 cut(s) 541, 691
Eco47I GGWCC 1 cut(s) 209
Eco47III AGCGCT 1 cut(s) 161
Eco57I CTGAAG 1 cut(s) 1239
EcoRII CCWGG 4 cut(s) 85, 227, 564, 678
EcoRV GATATC 2 cut(s) 541, 691
EcoT14I CCWWGG 1 cut(s) 1164
ErhI CCWWGG 1 cut(s) 1164
FaeI CATG 8 cut(s) 248, 394, 587, 756, 932, 937, 1135, 1215
FalI AAGNNNNNCTT 4 cut(s) 714, 746, 1015, 1047
FaqI GGGAC 1 cut(s) 1057
FatI CATG 8 cut(s) 244, 390, 583, 752, 928, 933, 1131, 1211
FauNDI CATATG 1 cut(s) 834
FbaI TGATCA 1 cut(s) 133
FblI GTMKAC 1 cut(s) 1228
Fnu4HI GCNGC 6 cut(s) 555, 776, 873, 876, 945, 957
FokI GGATG 3 cut(s) 18, 486, 715
Fsp4HI GCNGC 6 cut(s) 555, 776, 873, 876, 945, 957
FspBI CTAG 3 cut(s) 152, 477, 635
GlaI GCGC 1 cut(s) 161
GluI GCNGC 6 cut(s) 555, 776, 873, 876, 945, 957
HaeII RGCGCY 1 cut(s) 163
HaeIII GGCC 2 cut(s) 22, 678
HapII CCGG 1 cut(s) 296
HgaI GACGC 1 cut(s) 1197
HhaI GCGC 1 cut(s) 162
Hin1II CATG 8 cut(s) 248, 394, 587, 756, 932, 937, 1135, 1215
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HinfI GANTC 4 cut(s) 148, 799, 898, 1027
HpaII CCGG 1 cut(s) 296
HphI GGTGA 3 cut(s) 143, 775, 1005
Hpy166II GTNNAC 3 cut(s) 623, 656, 1229
Hpy188I TCNGA 5 cut(s) 65, 514, 897, 1063, 1219
Hpy188III TCNNGA 6 cut(s) 203, 365, 902, 1042, 1096, 1154
Hpy8I GTNNAC 3 cut(s) 623, 656, 1229
HpyAV CCTTC 5 cut(s) 200, 635, 902, 1041, 1206
HpyCH4III ACNGT 4 cut(s) 348, 572, 893, 1106
HpyCH4IV ACGT 2 cut(s) 652, 1019
HpyCH4V TGCA 7 cut(s) 14, 427, 656, 667, 719, 875, 959
HpyF10VI GCNNNNNNNGC 7 cut(s) 644, 653, 731, 872, 944, 953, 995
HpyF3I CTNAG 4 cut(s) 102, 120, 304, 867
HpySE526I ACGT 2 cut(s) 652, 1019
Hsp92II CATG 8 cut(s) 248, 394, 587, 756, 932, 937, 1135, 1215
HspAI GCGC 1 cut(s) 160
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 4 cut(s) 133, 265, 1108, 1128
LmnI GCTCC 2 cut(s) 157, 644
Lsp1109I GCAGC 6 cut(s) 566, 787, 859, 887, 931, 943
LweI GCATC 4 cut(s) 23, 69, 436, 1195
MabI ACCWGGT 1 cut(s) 85
MaeI CTAG 3 cut(s) 152, 477, 635
MaeII ACGT 2 cut(s) 652, 1019
MaeIII GTNAC 3 cut(s) 123, 441, 450
MalI GATC 4 cut(s) 135, 267, 1110, 1130
MboI GATC 4 cut(s) 133, 265, 1108, 1128
MfeI CAATTG 2 cut(s) 137, 627
MflI RGATCY 1 cut(s) 265
MhlI GDGCHC 1 cut(s) 658
MluCI AATT 5 cut(s) 137, 335, 352, 460, 627
MlyI GAGTC 2 cut(s) 142, 1021
MmeI TCCRAC 1 cut(s) 718
MnlI CCTC 8 cut(s) 225, 242, 373, 473, 603, 606, 988, 1018
MroXI GAANNNNTTC 1 cut(s) 748
MseI TTAA 8 cut(s) 92, 173, 311, 351, 548, 794, 846, 1002
MspA1I CMGCKG 1 cut(s) 557
MspI CCGG 1 cut(s) 296
MspR9I CCNGG 4 cut(s) 87, 229, 566, 680
MunI CAATTG 2 cut(s) 137, 627
MvaI CCWGG 4 cut(s) 87, 229, 566, 680
MwoI GCNNNNNNNGC 7 cut(s) 644, 653, 731, 872, 944, 953, 995
NdeI CATATG 1 cut(s) 834
NdeII GATC 4 cut(s) 133, 265, 1108, 1128
NlaIII CATG 8 cut(s) 248, 394, 587, 756, 932, 937, 1135, 1215
NlaIV GGNNCC 1 cut(s) 484
NmuCI GTSAC 2 cut(s) 123, 450
NspI RCATGY 1 cut(s) 587
PcsI WCGNNNNNNNCGW 1 cut(s) 822
PdmI GAANNNNTTC 1 cut(s) 748
PfeI GAWTC 2 cut(s) 799, 898
PinAI ACCGGT 1 cut(s) 295
PkrI GCNGC 6 cut(s) 556, 777, 874, 877, 946, 958
PleI GAGTC 2 cut(s) 142, 1021
PpsI GAGTC 2 cut(s) 142, 1021
Ppu21I YACGTR 1 cut(s) 653
Psp6I CCWGG 4 cut(s) 85, 227, 564, 678
PspGI CCWGG 4 cut(s) 85, 227, 564, 678
PspN4I GGNNCC 1 cut(s) 484
PspPI GGNCC 1 cut(s) 209
PstI CTGCAG 2 cut(s) 877, 961
PstNI CAGNNNCTG 1 cut(s) 127
PsuI RGATCY 1 cut(s) 265
PvuII CAGCTG 1 cut(s) 557
RsaI GTAC 3 cut(s) 84, 345, 1187
RsaNI GTAC 3 cut(s) 83, 344, 1186
SaqAI TTAA 8 cut(s) 92, 173, 311, 351, 548, 794, 846, 1002
SatI GCNGC 6 cut(s) 555, 776, 873, 876, 945, 957
Sau3AI GATC 4 cut(s) 133, 265, 1108, 1128
Sau96I GGNCC 1 cut(s) 209
SchI GAGTC 2 cut(s) 142, 1021
ScrFI CCNGG 4 cut(s) 87, 229, 566, 680
SduI GDGCHC 1 cut(s) 658
SexAI ACCWGGT 1 cut(s) 85
SfaNI GCATC 4 cut(s) 23, 69, 436, 1195
SfcI CTRYAG 2 cut(s) 873, 957
SinI GGWCC 1 cut(s) 209
Sse9I AATT 5 cut(s) 137, 335, 352, 460, 627
SsiI CCGC 1 cut(s) 938
SspI AATATT 1 cut(s) 414
SspMI CTAG 3 cut(s) 152, 477, 635
StyD4I CCNGG 4 cut(s) 85, 227, 564, 678
StyI CCWWGG 1 cut(s) 1164
TaaI ACNGT 4 cut(s) 348, 572, 893, 1106
TaiI ACGT 2 cut(s) 655, 1022
TaqI TCGA 1 cut(s) 537
TasI AATT 5 cut(s) 137, 335, 352, 460, 627
TatI WGTACW 1 cut(s) 343
TfiI GAWTC 2 cut(s) 799, 898
Tru1I TTAA 8 cut(s) 92, 173, 311, 351, 548, 794, 846, 1002
Tru9I TTAA 8 cut(s) 92, 173, 311, 351, 548, 794, 846, 1002
TscAI CASTG 2 cut(s) 132, 493
TseFI GTSAC 2 cut(s) 123, 450
TseI GCWGC 6 cut(s) 554, 775, 872, 875, 944, 956
Tsp45I GTSAC 2 cut(s) 123, 450
TspDTI ATGAA 7 cut(s) 387, 423, 741, 812, 921, 1064, 1137
TspGWI ACGGA 1 cut(s) 1246
TspRI CASTG 2 cut(s) 132, 493
VneI GTGCAC 1 cut(s) 654
VpaK11BI GGWCC 1 cut(s) 209
XceI RCATGY 1 cut(s) 587
XmiI GTMKAC 1 cut(s) 1228
XmnI GAANNNNTTC 1 cut(s) 748
XspI CTAG 3 cut(s) 152, 477, 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.