AT1G18200

RAB GTPase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011926
Physical Location & Seq
Reverse (-)
6265416 .. 6267076
1661 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G18200.1

Sequence Viewer

Length: 690 bp
ATGGCGGAGGAATCGTACGACGAAGAGTGCGACTACCTATTCAAGGCGGTGCTGATAGGAGACTCCGCCGTCGGAAAATCAAACCTCCTTTCGAGGTTCTCGAGAGATGAGTTTCGGTTAGACTCTAAACCGACCATCGGAGTAGACTTTGCTTACCGGAATGTTCGCGTGGGCGATAAGACTATAAAGGCTCAGATATGGGACACCGCCGGCCAAGAAAGATTTAGAGCAATAACGAGTTCGTATTACCGTGGAGCCTTGGGAGCTTTACTAATCTACGACATCACAAGACGAATCACTTTCAAAAACATTGAGAAATGGTTGTCGGAGCTCAGAGGCTTCTCCAGTCCCGAGACTGTCGTTGTTCTCGTCGGTAACAAATCCGATCTCGGGCAGTCTAGAGAAGTTGAAGAAGAAGAGGGTAAGACTCTAGCAGAATCAGAAGGTCTCTATTTTCTCGAAACATCGGCTTTAGAGAACCAAAACGTTGAAGAAGCGTTTCTAAGCATGATCGGACGGATACATGAGGTTTTGACTCAGAAAATCGTTTTAGACAATAGACTCAACGGTGACGGTAACAACGAAAGTAACGGTGCTGTCGTTCCGCCCGGTAAAGAGATTGTGAATATTCATGAAGTTACCGCCACTCGACCGTTGAGTACTTCTTTGTCCAATTGTTGCTACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0012505 GO:0016020 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0071944 GO:0097708
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ras

Protein Analysis

229

Amino Acids

25.62

Weight (kDa)

4.95

Isoelectric Point (pI)

42.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 14 - 168 2.5e-12 ADP-ribosylation factor family
Ras PF00071 15 - 174 6.9e-60 Ras family
Roc PF08477 15 - 129 2e-32 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011926)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18200 AT1G73640
fragaria_vesca FvH4_5g17230
malus_domestica MD06G1230900.v1.1 MD14G1235500.v1.1
prunus_persica Prupe.5G232200_v2.0.a1
pyrus_communis pycom06g20230 pycom14g19640
rosa_chinensis RchiOBHm_Chr7g0178561
rosa_laevigata RLG00000005437
rosa_multiflora Rmu_sc0012505.1_g000002 Rmu_sc0021447.1_g000001
rosa_roxburghii Rroxscaffold_3G00274810
rosa_rugosa Rorug06G0417900
rosa_samantha Rh7AG016600 Rh7BG016100 Rh7CG016800 Rh7DG016700
rosa_wichuraiana Rw7G001320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 68
AccI GTMKAC 1 cut(s) 144
AccII CGCG 1 cut(s) 168
AciI CCGC 6 cut(s) 5, 47, 66, 207, 605, 642
AclI AACGTT 1 cut(s) 486
AcoI YGGCCR 1 cut(s) 211
AfaI GTAC 2 cut(s) 17, 661
AfiI CCNNNNNNNGG 3 cut(s) 43, 137, 390
AgsI TTSAA 4 cut(s) 43, 304, 410, 491
AluBI AGCT 2 cut(s) 266, 331
AluI AGCT 2 cut(s) 266, 331
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 3 cut(s) 54, 347, 452
Ama87I CYCGRG 3 cut(s) 100, 350, 389
AoxI GGCC 1 cut(s) 211
Asp700I GAANNNNTTC 1 cut(s) 498
AsuC2I CCSGG 1 cut(s) 609
AsuHPI GGTGA 1 cut(s) 581
AvaI CYCGRG 3 cut(s) 100, 350, 389
BanII GRGCYC 1 cut(s) 333
Bbv12I GWGCWC 1 cut(s) 333
BccI CCATC 1 cut(s) 143
BceAI ACGGC 1 cut(s) 53
BciVI GTATCC 1 cut(s) 513
BcnI CCSGG 1 cut(s) 609
BcoDI GTCTC 3 cut(s) 54, 347, 452
BfaI CTAG 2 cut(s) 399, 431
BfuI GTATCC 1 cut(s) 513
BmcAI AGTACT 1 cut(s) 661
Bme1390I CCNGG 1 cut(s) 609
BmeT110I CYCGRG 3 cut(s) 100, 350, 389
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 609
BpmI CTGGAG 1 cut(s) 328
BpuMI CCSGG 1 cut(s) 609
BsaI GGTCTC 1 cut(s) 452
BsaJI CCNNGG 2 cut(s) 250, 258
BsaWI WCCGGW 1 cut(s) 156
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 137, 390
Bse118I RCCGGY 1 cut(s) 209
Bse1I ACTGG 1 cut(s) 345
BseDI CCNNGG 2 cut(s) 250, 258
BseLI CCNNNNNNNGG 3 cut(s) 43, 137, 390
BseMII CTCAG 3 cut(s) 206, 346, 551
BseNI ACTGG 1 cut(s) 345
Bsh1236I CGCG 1 cut(s) 168
Bsh1285I CGRYCG 1 cut(s) 653
BshFI GGCC 1 cut(s) 213
BsiEI CGRYCG 1 cut(s) 653
BsiHKAI GWGCWC 1 cut(s) 333
BsiHKCI CYCGRG 3 cut(s) 100, 350, 389
BsiSI CCGG 3 cut(s) 157, 210, 609
BsiWI CGTACG 1 cut(s) 15
BslFI GGGAC 2 cut(s) 215, 333
BslI CCNNNNNNNGG 3 cut(s) 43, 137, 390
BsmAI GTCTC 3 cut(s) 54, 347, 452
BsmFI GGGAC 2 cut(s) 215, 333
BsnI GGCC 1 cut(s) 213
Bso31I GGTCTC 1 cut(s) 452
BsoBI CYCGRG 3 cut(s) 100, 350, 389
Bsp1286I GDGCHC 1 cut(s) 333
Bsp143I GATC 2 cut(s) 385, 510
BspACI CCGC 6 cut(s) 5, 47, 66, 207, 605, 642
BspANI GGCC 1 cut(s) 213
BspCNI CTCAG 3 cut(s) 205, 345, 550
BspFNI CGCG 1 cut(s) 168
BspHI TCATGA 1 cut(s) 631
BspLI GGNNCC 1 cut(s) 256
BspTNI GGTCTC 1 cut(s) 452
BsrFI RCCGGY 1 cut(s) 209
BsrI ACTGG 1 cut(s) 345
BssAI RCCGGY 1 cut(s) 209
BssECI CCNNGG 2 cut(s) 250, 258
BssMI GATC 2 cut(s) 385, 510
BssT1I CCWWGG 1 cut(s) 258
Bst4CI ACNGT 6 cut(s) 251, 358, 569, 575, 593, 654
Bst6I CTCTTC 2 cut(s) 18, 411
BstC8I GCNNGC 1 cut(s) 211
BstDEI CTNAG 4 cut(s) 192, 332, 503, 537
BstDSI CCRYGG 1 cut(s) 250
BstENI CCTNNNNNAGG 1 cut(s) 41
BstFNI CGCG 1 cut(s) 168
BstKTI GATC 2 cut(s) 388, 513
BstMAI GTCTC 3 cut(s) 54, 347, 452
BstMBI GATC 2 cut(s) 385, 510
BstMCI CGRYCG 1 cut(s) 653
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstSCI CCNGG 1 cut(s) 607
BstUI CGCG 1 cut(s) 168
BsuI GTATCC 1 cut(s) 513
BsuRI GGCC 1 cut(s) 213
BtgI CCRYGG 1 cut(s) 250
Cac8I GCNNGC 1 cut(s) 211
CciI TCATGA 1 cut(s) 631
Cfr10I RCCGGY 1 cut(s) 209
Csp6I GTAC 2 cut(s) 16, 660
CviAII CATG 3 cut(s) 508, 524, 632
CviJI RGCY 7 cut(s) 191, 213, 257, 266, 331, 339, 470
CviKI_1 RGCY 7 cut(s) 191, 213, 257, 266, 331, 339, 470
CviQI GTAC 2 cut(s) 16, 660
DdeI CTNAG 4 cut(s) 192, 332, 503, 537
DpnI GATC 2 cut(s) 387, 512
DpnII GATC 2 cut(s) 385, 510
DrdI GACNNNNNNGTC 1 cut(s) 68
DseDI GACNNNNNNGTC 1 cut(s) 68
EaeI YGGCCR 1 cut(s) 211
Eam1104I CTCTTC 2 cut(s) 18, 411
EarI CTCTTC 2 cut(s) 18, 411
EciI GGCGGA 3 cut(s) 20, 55, 594
Ecl136II GAGCTC 1 cut(s) 331
Eco130I CCWWGG 1 cut(s) 258
Eco24I GRGCYC 1 cut(s) 333
Eco31I GGTCTC 1 cut(s) 452
Eco53kI GAGCTC 1 cut(s) 331
Eco88I CYCGRG 3 cut(s) 100, 350, 389
EcoICRI GAGCTC 1 cut(s) 331
EcoNI CCTNNNNNAGG 1 cut(s) 41
EcoT14I CCWWGG 1 cut(s) 258
EcoT38I GRGCYC 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 258
FaeI CATG 3 cut(s) 511, 527, 635
FaiI YATR 5 cut(s) 185, 199, 509, 525, 633
FaqI GGGAC 2 cut(s) 215, 333
FatI CATG 3 cut(s) 507, 523, 631
FblI GTMKAC 1 cut(s) 144
FriOI GRGCYC 1 cut(s) 333
FspBI CTAG 2 cut(s) 399, 431
GsuI CTGGAG 1 cut(s) 328
HaeIII GGCC 1 cut(s) 213
HapII CCGG 3 cut(s) 157, 210, 609
Hin1II CATG 3 cut(s) 511, 527, 635
HinfI GANTC 8 cut(s) 11, 62, 122, 294, 427, 437, 535, 561
HpaII CCGG 3 cut(s) 157, 210, 609
HphI GGTGA 1 cut(s) 581
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 9 cut(s) 74, 140, 195, 328, 335, 385, 442, 515, 540
Hpy188III TCNNGA 6 cut(s) 100, 102, 350, 399, 458, 632
Hpy8I GTNNAC 1 cut(s) 145
Hpy99I CGWCG 3 cut(s) 23, 74, 374
HpyAV CCTTC 1 cut(s) 437
HpyCH4III ACNGT 6 cut(s) 251, 358, 569, 575, 593, 654
HpyCH4IV ACGT 1 cut(s) 486
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 4 cut(s) 192, 332, 503, 537
HpySE526I ACGT 1 cut(s) 486
Hsp92II CATG 3 cut(s) 511, 527, 635
KroI GCCGGC 1 cut(s) 209
KroNI GCCGGC 1 cut(s) 211
Kzo9I GATC 2 cut(s) 385, 510
LmnI GCTCC 3 cut(s) 254, 263, 328
LpnPI CCDG 4 cut(s) 170, 223, 358, 622
MaeI CTAG 2 cut(s) 399, 431
MaeII ACGT 1 cut(s) 486
MaeIII GTNAC 5 cut(s) 374, 569, 575, 587, 637
MalI GATC 2 cut(s) 387, 512
MboI GATC 2 cut(s) 385, 510
MboII GAAGA 5 cut(s) 35, 422, 425, 428, 503
MfeI CAATTG 1 cut(s) 673
MhlI GDGCHC 1 cut(s) 333
MluCI AATT 1 cut(s) 673
MlyI GAGTC 5 cut(s) 56, 116, 421, 529, 555
MmeI TCCRAC 2 cut(s) 52, 306
MnlI CCTC 5 cut(s) 87, 95, 329, 412, 520
MroNI GCCGGC 1 cut(s) 209
MroXI GAANNNNTTC 1 cut(s) 498
MspI CCGG 3 cut(s) 157, 210, 609
MspR9I CCNGG 1 cut(s) 609
MunI CAATTG 1 cut(s) 673
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 1 cut(s) 263
NaeI GCCGGC 1 cut(s) 211
NciI CCSGG 1 cut(s) 609
NdeII GATC 2 cut(s) 385, 510
NgoMIV GCCGGC 1 cut(s) 209
NlaIII CATG 3 cut(s) 511, 527, 635
NlaIV GGNNCC 1 cut(s) 256
NmuCI GTSAC 1 cut(s) 569
PaeR7I CTCGAG 1 cut(s) 100
PagI TCATGA 1 cut(s) 631
PcsI WCGNNNNNNNCGW 5 cut(s) 27, 98, 366, 579, 597
PdiI GCCGGC 1 cut(s) 211
PdmI GAANNNNTTC 1 cut(s) 498
PfeI GAWTC 3 cut(s) 11, 294, 437
Pfl23II CGTACG 1 cut(s) 15
PleI GAGTC 5 cut(s) 56, 116, 421, 529, 555
PpsI GAGTC 5 cut(s) 56, 116, 421, 529, 555
Psp124BI GAGCTC 1 cut(s) 333
Psp1406I AACGTT 1 cut(s) 486
PspLI CGTACG 1 cut(s) 15
PspN4I GGNNCC 1 cut(s) 256
RsaI GTAC 2 cut(s) 17, 661
RsaNI GTAC 2 cut(s) 16, 660
SacI GAGCTC 1 cut(s) 333
Sau3AI GATC 2 cut(s) 385, 510
ScaI AGTACT 1 cut(s) 661
SchI GAGTC 5 cut(s) 56, 116, 421, 529, 555
ScrFI CCNGG 1 cut(s) 609
SduI GDGCHC 1 cut(s) 333
SetI ASST 8 cut(s) 39, 87, 98, 268, 333, 448, 489, 531
Sfr274I CTCGAG 1 cut(s) 100
SlaI CTCGAG 1 cut(s) 100
SmlI CTYRAG 1 cut(s) 100
SmoI CTYRAG 1 cut(s) 100
Sse9I AATT 1 cut(s) 673
SsiI CCGC 6 cut(s) 5, 47, 66, 207, 605, 642
SspI AATATT 1 cut(s) 628
SspMI CTAG 2 cut(s) 399, 431
SstI GAGCTC 1 cut(s) 333
StyD4I CCNGG 1 cut(s) 607
StyI CCWWGG 1 cut(s) 258
TaaI ACNGT 6 cut(s) 251, 358, 569, 575, 593, 654
TaiI ACGT 1 cut(s) 489
TaqI TCGA 4 cut(s) 92, 101, 459, 649
TasI AATT 1 cut(s) 673
TatI WGTACW 1 cut(s) 659
TfiI GAWTC 3 cut(s) 11, 294, 437
TseFI GTSAC 1 cut(s) 569
Tsp45I GTSAC 1 cut(s) 569
TspDTI ATGAA 2 cut(s) 620, 648
TspGWI ACGGA 1 cut(s) 532
XagI CCTNNNNNAGG 1 cut(s) 41
XbaI TCTAGA 1 cut(s) 398
XhoI CTCGAG 1 cut(s) 100
XmiI GTMKAC 1 cut(s) 144
XmnI GAANNNNTTC 1 cut(s) 498
XspI CTAG 2 cut(s) 399, 431
ZrmI AGTACT 1 cut(s) 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.