Rmu_sc0012505.1_g000002

Ras-related protein RABA6a-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012505.1
OG0011926
Physical Location & Seq
Forward (+)
5872 .. 7494
1623 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012505.1_g000002.1.cds

Sequence Viewer

Length: 687 bp
atgaagaactcatcggtgttcatggtggattccgttgatgaagactgtgattatctgttcaaggcggttttgatcggggactctggagttgggaaatcaaacttgctgtccaggttttcgaaaggcgaattccggctggattccaagcccaccatcggtgtcgagttcgcttaccggaatatcaaggttggtgacagactcgtcaaggctcaaatatgggacactgccggccaagaaagattcagagcgatcaccagttcatactaccgtggagcgcttggttcgatactagtgtatgacataactcggcgaaaatcctttgagaatgtggagaaatggttgcgtgagctccgggagtatggtaattcggatatggttattgttcttgtaggaaacaaattggatttgagccactcgagagaggtcaccgaggaagaaggtagaaattttgcggaggcggaagggatatgtttcatggaaacttcggctctagagaatgtgaatgttgacagactttttttggatatgatttctaagattcatgaaataacgagccacaagagtttggacaccaaaatggatgatcaaactagtgcgagtcttcacgctgcgaaagaaatcattcatatcgatgatgataatgaagtcacggctactaaacaatctagttattgttgctcgagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0012505 GO:0016020 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0071944 GO:0097708
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ras

Protein Analysis

228

Amino Acids

25.83

Weight (kDa)

5.24

Isoelectric Point (pI)

30.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011926)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18200 AT1G73640
fragaria_vesca FvH4_5g17230
malus_domestica MD06G1230900.v1.1 MD14G1235500.v1.1
prunus_persica Prupe.5G232200_v2.0.a1
pyrus_communis pycom06g20230 pycom14g19640
rosa_chinensis RchiOBHm_Chr7g0178561
rosa_laevigata RLG00000005437
rosa_multiflora Rmu_sc0012505.1_g000002 Rmu_sc0021447.1_g000001
rosa_roxburghii Rroxscaffold_3G00274810
rosa_rugosa Rorug06G0417900
rosa_samantha Rh7AG016600 Rh7BG016100 Rh7CG016800 Rh7DG016700
rosa_wichuraiana Rw7G001320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 200
AciI CCGC 3 cut(s) 65, 452, 458
AcoI YGGCCR 1 cut(s) 229
AcsI RAATTY 2 cut(s) 128, 445
AfeI AGCGCT 1 cut(s) 276
AfiI CCNNNNNNNGG 1 cut(s) 155
AgsI TTSAA 1 cut(s) 61
AhlI ACTAGT 2 cut(s) 289, 590
AjnI CCWGG 1 cut(s) 110
AluBI AGCT 1 cut(s) 349
AluI AGCT 1 cut(s) 349
Alw21I GWGCWC 1 cut(s) 351
Ama87I CYCGRG 2 cut(s) 415, 679
Aor51HI AGCGCT 1 cut(s) 276
AoxI GGCC 1 cut(s) 229
ApeKI GCWGC 1 cut(s) 608
ApoI RAATTY 2 cut(s) 128, 445
ArsI GACNNNNNNTTYG 2 cut(s) 92, 124
Asp700I GAANNNNTTC 1 cut(s) 621
AspLEI GCGC 1 cut(s) 277
AsuC2I CCSGG 1 cut(s) 353
AsuHPI GGTGA 3 cut(s) 203, 244, 418
AsuII TTCGAA 1 cut(s) 119
AvaI CYCGRG 2 cut(s) 415, 679
BaeI ACNNNNGTAYC 2 cut(s) 278, 311
BanII GRGCYC 1 cut(s) 351
BbsI GAAGAC 2 cut(s) 48, 593
Bbv12I GWGCWC 1 cut(s) 351
BbvI GCAGC 1 cut(s) 595
BccI CCATC 1 cut(s) 161
BceAI ACGGC 1 cut(s) 666
BciT130I CCWGG 1 cut(s) 112
BclI TGATCA 1 cut(s) 583
BcnI CCSGG 1 cut(s) 353
BcuI ACTAGT 2 cut(s) 289, 590
BfaI CTAG 4 cut(s) 290, 491, 591, 666
BfoI RGCGCY 1 cut(s) 278
BisI GCNGC 1 cut(s) 609
BlsI GCNGC 1 cut(s) 610
Bme1390I CCNGG 2 cut(s) 112, 353
BmeT110I CYCGRG 2 cut(s) 415, 679
BmrFI CCNGG 2 cut(s) 112, 353
BpiI GAAGAC 2 cut(s) 48, 593
BpmI CTGGAG 1 cut(s) 105
Bpu14I TTCGAA 1 cut(s) 119
BpuMI CCSGG 1 cut(s) 353
Bsa29I ATCGAT 1 cut(s) 630
BsaJI CCNNGG 2 cut(s) 268, 429
BsaWI WCCGGW 1 cut(s) 174
BsaXI ACNNNNNCTCC 2 cut(s) 323, 353
Bsc4I CCNNNNNNNGG 1 cut(s) 155
Bse118I RCCGGY 1 cut(s) 227
Bse1I ACTGG 1 cut(s) 255
BseBI CCWGG 1 cut(s) 112
BseCI ATCGAT 1 cut(s) 630
BseDI CCNNGG 2 cut(s) 268, 429
BseGI GGATG 1 cut(s) 586
BseLI CCNNNNNNNGG 1 cut(s) 155
BseNI ACTGG 1 cut(s) 255
BseXI GCAGC 1 cut(s) 595
BshFI GGCC 1 cut(s) 231
BshVI ATCGAT 1 cut(s) 630
BsiHKAI GWGCWC 1 cut(s) 351
BsiHKCI CYCGRG 2 cut(s) 415, 679
BsiSI CCGG 4 cut(s) 133, 175, 228, 352
BslFI GGGAC 2 cut(s) 92, 233
BslI CCNNNNNNNGG 1 cut(s) 155
BsmFI GGGAC 2 cut(s) 92, 233
BsnI GGCC 1 cut(s) 231
BsoBI CYCGRG 2 cut(s) 415, 679
Bsp119I TTCGAA 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 351
Bsp143I GATC 3 cut(s) 72, 249, 583
BspACI CCGC 3 cut(s) 65, 452, 458
BspANI GGCC 1 cut(s) 231
BspDI ATCGAT 1 cut(s) 630
BspHI TCATGA 1 cut(s) 541
BspT104I TTCGAA 1 cut(s) 119
BsrFI RCCGGY 1 cut(s) 227
BsrI ACTGG 1 cut(s) 255
BssAI RCCGGY 1 cut(s) 227
BssECI CCNNGG 2 cut(s) 268, 429
BssMI GATC 3 cut(s) 72, 249, 583
Bst2UI CCWGG 1 cut(s) 112
Bst4CI ACNGT 2 cut(s) 47, 269
BstBI TTCGAA 1 cut(s) 119
BstC8I GCNNGC 1 cut(s) 229
BstDEI CTNAG 1 cut(s) 534
BstDSI CCRYGG 1 cut(s) 268
BstEII GGTNACC 1 cut(s) 424
BstF5I GGATG 1 cut(s) 586
BstH2I RGCGCY 1 cut(s) 278
BstHHI GCGC 1 cut(s) 277
BstKTI GATC 3 cut(s) 75, 252, 586
BstMBI GATC 3 cut(s) 72, 249, 583
BstNI CCWGG 1 cut(s) 112
BstPI GGTNACC 1 cut(s) 424
BstSCI CCNGG 2 cut(s) 110, 351
BstV1I GCAGC 1 cut(s) 595
BstV2I GAAGAC 2 cut(s) 48, 593
Bsu15I ATCGAT 1 cut(s) 630
BsuRI GGCC 1 cut(s) 231
BsuTUI ATCGAT 1 cut(s) 630
BtgI CCRYGG 1 cut(s) 268
BtsCI GGATG 1 cut(s) 586
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 1 cut(s) 222
Cac8I GCNNGC 1 cut(s) 229
CciI TCATGA 1 cut(s) 541
CfoI GCGC 1 cut(s) 277
Cfr10I RCCGGY 1 cut(s) 227
ClaI ATCGAT 1 cut(s) 630
CviAII CATG 3 cut(s) 22, 475, 542
CviJI RGCY 9 cut(s) 136, 148, 209, 231, 349, 411, 488, 555, 653
CviKI_1 RGCY 9 cut(s) 136, 148, 209, 231, 349, 411, 488, 555, 653
DdeI CTNAG 1 cut(s) 534
DpnI GATC 3 cut(s) 74, 251, 585
DpnII GATC 3 cut(s) 72, 249, 583
DrdI GACNNNNNNGTC 1 cut(s) 200
DseDI GACNNNNNNGTC 1 cut(s) 200
EaeI YGGCCR 1 cut(s) 229
EciI GGCGGA 1 cut(s) 473
Ecl136II GAGCTC 1 cut(s) 349
Eco24I GRGCYC 1 cut(s) 351
Eco47III AGCGCT 1 cut(s) 276
Eco53kI GAGCTC 1 cut(s) 349
Eco88I CYCGRG 2 cut(s) 415, 679
Eco91I GGTNACC 1 cut(s) 424
EcoICRI GAGCTC 1 cut(s) 349
EcoO65I GGTNACC 1 cut(s) 424
EcoRI GAATTC 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 110
EcoT38I GRGCYC 1 cut(s) 351
FaeI CATG 3 cut(s) 25, 478, 545
FaqI GGGAC 2 cut(s) 92, 233
FatI CATG 3 cut(s) 21, 474, 541
FbaI TGATCA 1 cut(s) 583
Fnu4HI GCNGC 1 cut(s) 609
FokI GGATG 1 cut(s) 593
FriOI GRGCYC 1 cut(s) 351
Fsp4HI GCNGC 1 cut(s) 609
FspBI CTAG 4 cut(s) 290, 491, 591, 666
GlaI GCGC 1 cut(s) 276
GluI GCNGC 1 cut(s) 609
GsuI CTGGAG 1 cut(s) 105
HaeII RGCGCY 1 cut(s) 278
HaeIII GGCC 1 cut(s) 231
HapII CCGG 4 cut(s) 133, 175, 228, 352
HhaI GCGC 1 cut(s) 277
Hin1II CATG 3 cut(s) 25, 478, 545
Hin6I GCGC 1 cut(s) 275
HinP1I GCGC 1 cut(s) 275
HincII GTYRAC 1 cut(s) 508
HindII GTYRAC 1 cut(s) 508
HinfI GANTC 7 cut(s) 29, 80, 140, 198, 240, 538, 598
HpaII CCGG 4 cut(s) 133, 175, 228, 352
HphI GGTGA 3 cut(s) 203, 244, 418
Hpy166II GTNNAC 1 cut(s) 508
Hpy188I TCNGA 2 cut(s) 245, 370
Hpy188III TCNNGA 5 cut(s) 84, 417, 491, 542, 681
Hpy8I GTNNAC 1 cut(s) 508
HpyAV CCTTC 2 cut(s) 431, 455
HpyCH4III ACNGT 2 cut(s) 47, 269
HpyF3I CTNAG 1 cut(s) 534
Hsp92II CATG 3 cut(s) 25, 478, 545
HspAI GCGC 1 cut(s) 275
KroI GCCGGC 1 cut(s) 227
KroNI GCCGGC 1 cut(s) 229
Ksp22I TGATCA 1 cut(s) 583
Kzo9I GATC 3 cut(s) 72, 249, 583
LmnI GCTCC 2 cut(s) 272, 354
LpnPI CCDG 9 cut(s) 69, 97, 122, 124, 146, 188, 241, 268, 365
Lsp1109I GCAGC 1 cut(s) 595
MaeI CTAG 4 cut(s) 290, 491, 591, 666
MaeIII GTNAC 3 cut(s) 191, 424, 646
MalI GATC 3 cut(s) 74, 251, 585
MboI GATC 3 cut(s) 72, 249, 583
MboII GAAGA 4 cut(s) 16, 53, 446, 593
MhlI GDGCHC 1 cut(s) 351
MluCI AATT 4 cut(s) 128, 364, 398, 445
MlyI GAGTC 3 cut(s) 74, 192, 607
MnlI CCTC 3 cut(s) 415, 424, 448
MroNI GCCGGC 1 cut(s) 227
MroXI GAANNNNTTC 1 cut(s) 621
MslI CAYNNNNRTG 2 cut(s) 575, 630
MspI CCGG 4 cut(s) 133, 175, 228, 352
MspR9I CCNGG 2 cut(s) 112, 353
MvaI CCWGG 1 cut(s) 112
NaeI GCCGGC 1 cut(s) 229
NciI CCSGG 1 cut(s) 353
NdeII GATC 3 cut(s) 72, 249, 583
NgoMIV GCCGGC 1 cut(s) 227
NlaIII CATG 3 cut(s) 25, 478, 545
NmeAIII GCCGAG 1 cut(s) 286
NmuCI GTSAC 3 cut(s) 191, 424, 646
NspV TTCGAA 1 cut(s) 119
PaeR7I CTCGAG 2 cut(s) 415, 679
PagI TCATGA 1 cut(s) 541
PdiI GCCGGC 1 cut(s) 229
PdmI GAANNNNTTC 1 cut(s) 621
PfeI GAWTC 4 cut(s) 29, 140, 240, 538
PfoI TCCNGGA 1 cut(s) 351
PkrI GCNGC 1 cut(s) 610
PleI GAGTC 3 cut(s) 74, 192, 606
PpsI GAGTC 3 cut(s) 74, 192, 606
Psp124BI GAGCTC 1 cut(s) 351
Psp6I CCWGG 1 cut(s) 110
PspEI GGTNACC 1 cut(s) 424
PspGI CCWGG 1 cut(s) 110
RseI CAYNNNNRTG 2 cut(s) 575, 630
SacI GAGCTC 1 cut(s) 351
SatI GCNGC 1 cut(s) 609
Sau3AI GATC 3 cut(s) 72, 249, 583
SchI GAGTC 3 cut(s) 74, 192, 607
ScrFI CCNGG 2 cut(s) 112, 353
SduI GDGCHC 1 cut(s) 351
SetI ASST 5 cut(s) 116, 189, 351, 426, 442
Sfr274I CTCGAG 2 cut(s) 415, 679
SfuI TTCGAA 1 cut(s) 119
SlaI CTCGAG 2 cut(s) 415, 679
SmiMI CAYNNNNRTG 2 cut(s) 575, 630
SmlI CTYRAG 2 cut(s) 415, 679
SmoI CTYRAG 2 cut(s) 415, 679
SpeI ACTAGT 2 cut(s) 289, 590
Sse9I AATT 4 cut(s) 128, 364, 398, 445
SsiI CCGC 3 cut(s) 65, 452, 458
SspMI CTAG 4 cut(s) 290, 491, 591, 666
SstI GAGCTC 1 cut(s) 351
StyD4I CCNGG 2 cut(s) 110, 351
TaaI ACNGT 2 cut(s) 47, 269
TaqI TCGA 6 cut(s) 119, 162, 284, 416, 630, 680
TasI AATT 4 cut(s) 128, 364, 398, 445
TfiI GAWTC 4 cut(s) 29, 140, 240, 538
TscAI CASTG 1 cut(s) 229
TseFI GTSAC 3 cut(s) 191, 424, 646
TseI GCWGC 1 cut(s) 608
Tsp45I GTSAC 3 cut(s) 191, 424, 646
TspDTI ATGAA 9 cut(s) 10, 17, 54, 249, 463, 530, 558, 614, 657
TspGWI ACGGA 1 cut(s) 22
TspRI CASTG 1 cut(s) 229
XapI RAATTY 2 cut(s) 128, 445
XbaI TCTAGA 1 cut(s) 490
XhoI CTCGAG 2 cut(s) 415, 679
XmnI GAANNNNTTC 1 cut(s) 621
XspI CTAG 4 cut(s) 290, 491, 591, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.