pycom06g20230

Ras-related protein RABA6a-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0011926
Physical Location & Seq
Reverse (-)
23341824 .. 23344673
2850 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g20230.1

Sequence Viewer

Length: 681 bp
ATGTTGATGGGTGATTCGATCGATGAAGAGTGTGATTACTTGTTTAAGGCAGTTTTGATCGGAGACTCCGGAGTTGGCAAATCGAATTTGCTATCCAGGTTTTCCAAAGACGAATTCCGGTTGGATTCCAAGCCCACCATCGGCGTCGAATTCGCTTACCGGAATATCAAGGTTGCCGATAGGATCGTCAAGGCTCAAATTTGGGACACTGCCGGCCAAGAAAGATTTAGAGCAATCACGAGCTCATACTACCGTGGGGCGCTTGGCGCCATTCTGGTGTACGACATTTCCCGGAGACAATCCTTCGAAAACGTGAGAAACTGGTTGCGGGAGCTCCGCGAGTTTGGTAATTTCGACATGGTCATTGTCCTCGTCGGAAACAAGTCGGATTTGAGCCAGTCTCGAGAGGTCGACGAGGAAGAAGGCAAAAGTTTTGCAGAGGCAGAAGGGTTGTGCTTCATGGAAACGTCTGCGTTAGAGAATGTGAACGTGGAGCAAGTATTTTTGGTTATGATTTCTAAGATTCATGACATTACGAGGCAGAAAAGTTTGGAAGCAAAAGTGGAAGAAACGAGTGTTGCGAGTAATAGTCTTGGTGGTGCGAAGGAAACCATCCATATTGGTGGTGATGATCATGAAGTTACGGCTACTAAGCCATCTAGTTATTGTTGCTCAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0012505 GO:0016020 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0071944 GO:0097708
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ras

Protein Analysis

227

Amino Acids

25.29

Weight (kDa)

4.93

Isoelectric Point (pI)

37.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 15 - 141 6.2e-14 ADP-ribosylation factor family
Ras PF00071 16 - 176 3.1e-61 Ras family
Roc PF08477 16 - 130 9.7e-34 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011926)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18200 AT1G73640
fragaria_vesca FvH4_5g17230
malus_domestica MD06G1230900.v1.1 MD14G1235500.v1.1
prunus_persica Prupe.5G232200_v2.0.a1
pyrus_communis pycom06g20230 pycom14g19640
rosa_chinensis RchiOBHm_Chr7g0178561
rosa_laevigata RLG00000005437
rosa_multiflora Rmu_sc0012505.1_g000002 Rmu_sc0021447.1_g000001
rosa_roxburghii Rroxscaffold_3G00274810
rosa_rugosa Rorug06G0417900
rosa_samantha Rh7AG016600 Rh7BG016100 Rh7CG016800 Rh7DG016700
rosa_wichuraiana Rw7G001320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 266
AccI GTMKAC 1 cut(s) 411
AccII CGCG 1 cut(s) 339
AccIII TCCGGA 1 cut(s) 68
AciI CCGC 2 cut(s) 328, 337
AclWI GGATC 1 cut(s) 191
AcoI YGGCCR 1 cut(s) 214
AcsI RAATTY 4 cut(s) 85, 113, 149, 198
AcyI GRCGYC 2 cut(s) 144, 267
AfaI GTAC 1 cut(s) 281
AfiI CCNNNNNNNGG 1 cut(s) 140
AjnI CCWGG 1 cut(s) 95
AjuI GAANNNNNNNTTGG 2 cut(s) 98, 130
AluBI AGCT 2 cut(s) 243, 334
AluI AGCT 2 cut(s) 243, 334
Alw21I GWGCWC 2 cut(s) 245, 336
Alw26I GTCTC 3 cut(s) 57, 289, 405
AlwI GGATC 1 cut(s) 191
Ama87I CYCGRG 1 cut(s) 402
Aor13HI TCCGGA 1 cut(s) 68
AoxI GGCC 1 cut(s) 214
ApoI RAATTY 4 cut(s) 85, 113, 149, 198
AspLEI GCGC 2 cut(s) 262, 269
AsuC2I CCSGG 1 cut(s) 292
AsuHPI GGTGA 2 cut(s) 23, 638
AsuII TTCGAA 1 cut(s) 306
AvaI CYCGRG 1 cut(s) 402
BanI GGYRCC 1 cut(s) 266
BanII GRGCYC 2 cut(s) 245, 336
BauI CACGAG 1 cut(s) 238
Bbv12I GWGCWC 2 cut(s) 245, 336
BccI CCATC 3 cut(s) 146, 620, 664
BceAI ACGGC 1 cut(s) 660
BciT130I CCWGG 1 cut(s) 97
BclI TGATCA 1 cut(s) 631
BcnI CCSGG 1 cut(s) 292
BcoDI GTCTC 3 cut(s) 57, 289, 405
BfaI CTAG 1 cut(s) 660
BfoI RGCGCY 2 cut(s) 263, 270
Bme1390I CCNGG 2 cut(s) 97, 292
BmeT110I CYCGRG 1 cut(s) 402
BmiI GGNNCC 1 cut(s) 268
BmrFI CCNGG 2 cut(s) 97, 292
BplI GAGNNNNNCTC 2 cut(s) 385, 417
Bpu14I TTCGAA 1 cut(s) 306
BpuMI CCSGG 1 cut(s) 292
Bsa29I ATCGAT 1 cut(s) 21
BsaHI GRCGYC 2 cut(s) 144, 267
BsaJI CCNNGG 1 cut(s) 253
BsaWI WCCGGW 3 cut(s) 68, 117, 159
Bsc4I CCNNNNNNNGG 1 cut(s) 140
Bse118I RCCGGY 1 cut(s) 212
Bse1I ACTGG 2 cut(s) 326, 397
BseAI TCCGGA 1 cut(s) 68
BseBI CCWGG 1 cut(s) 97
BseCI ATCGAT 1 cut(s) 21
BseDI CCNNGG 1 cut(s) 253
BseGI GGATG 1 cut(s) 612
BseLI CCNNNNNNNGG 1 cut(s) 140
BseNI ACTGG 2 cut(s) 326, 397
Bsh1236I CGCG 1 cut(s) 339
Bsh1285I CGRYCG 1 cut(s) 21
BshFI GGCC 1 cut(s) 216
BshNI GGYRCC 1 cut(s) 266
BshVI ATCGAT 1 cut(s) 21
BsiEI CGRYCG 1 cut(s) 21
BsiHKAI GWGCWC 2 cut(s) 245, 336
BsiHKCI CYCGRG 1 cut(s) 402
BsiSI CCGG 5 cut(s) 69, 118, 160, 213, 292
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 1 cut(s) 140
BsmAI GTCTC 3 cut(s) 57, 289, 405
BsmFI GGGAC 1 cut(s) 218
BsnI GGCC 1 cut(s) 216
BsoBI CYCGRG 1 cut(s) 402
Bsp119I TTCGAA 1 cut(s) 306
Bsp1286I GDGCHC 2 cut(s) 245, 336
Bsp13I TCCGGA 1 cut(s) 68
Bsp143I GATC 4 cut(s) 18, 57, 183, 631
BspACI CCGC 2 cut(s) 328, 337
BspANI GGCC 1 cut(s) 216
BspDI ATCGAT 1 cut(s) 21
BspEI TCCGGA 1 cut(s) 68
BspFNI CGCG 1 cut(s) 339
BspHI TCATGA 2 cut(s) 526, 634
BspLI GGNNCC 1 cut(s) 268
BspPI GGATC 1 cut(s) 191
BspT104I TTCGAA 1 cut(s) 306
BspT107I GGYRCC 1 cut(s) 266
BsrFI RCCGGY 1 cut(s) 212
BsrI ACTGG 2 cut(s) 326, 397
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 4 cut(s) 18, 57, 183, 631
BssNI GRCGYC 2 cut(s) 144, 267
BssSI CACGAG 1 cut(s) 238
Bst2BI CACGAG 1 cut(s) 238
Bst2UI CCWGG 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 254
Bst6I CTCTTC 1 cut(s) 21
BstACI GRCGYC 2 cut(s) 144, 267
BstBI TTCGAA 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 214
BstDEI CTNAG 2 cut(s) 519, 651
BstDSI CCRYGG 1 cut(s) 253
BstF5I GGATG 1 cut(s) 612
BstFNI CGCG 1 cut(s) 339
BstH2I RGCGCY 2 cut(s) 263, 270
BstHHI GCGC 2 cut(s) 262, 269
BstKTI GATC 4 cut(s) 21, 60, 186, 634
BstMAI GTCTC 3 cut(s) 57, 289, 405
BstMBI GATC 4 cut(s) 18, 57, 183, 631
BstMCI CGRYCG 1 cut(s) 21
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstNI CCWGG 1 cut(s) 97
BstSCI CCNGG 2 cut(s) 95, 290
BstUI CGCG 1 cut(s) 339
BstXI CCANNNNNNTGG 1 cut(s) 623
Bsu15I ATCGAT 1 cut(s) 21
BsuRI GGCC 1 cut(s) 216
BsuTUI ATCGAT 1 cut(s) 21
BtgI CCRYGG 1 cut(s) 253
BtsCI GGATG 1 cut(s) 612
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 1 cut(s) 207
Cac8I GCNNGC 1 cut(s) 214
CciI TCATGA 2 cut(s) 526, 634
CfoI GCGC 2 cut(s) 262, 269
Cfr10I RCCGGY 1 cut(s) 212
ClaI ATCGAT 1 cut(s) 21
CseI GACGC 1 cut(s) 133
Csp6I GTAC 1 cut(s) 280
CviAII CATG 4 cut(s) 358, 460, 527, 635
CviJI RGCY 8 cut(s) 133, 194, 216, 243, 334, 396, 647, 655
CviKI_1 RGCY 8 cut(s) 133, 194, 216, 243, 334, 396, 647, 655
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 2 cut(s) 519, 651
DinI GGCGCC 1 cut(s) 268
DpnI GATC 4 cut(s) 20, 59, 185, 633
DpnII GATC 4 cut(s) 18, 57, 183, 631
EaeI YGGCCR 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
Ecl136II GAGCTC 2 cut(s) 243, 334
Eco24I GRGCYC 2 cut(s) 245, 336
Eco53kI GAGCTC 2 cut(s) 243, 334
Eco88I CYCGRG 1 cut(s) 402
EcoICRI GAGCTC 2 cut(s) 243, 334
EcoRI GAATTC 2 cut(s) 113, 149
EcoRII CCWGG 1 cut(s) 95
EcoT38I GRGCYC 2 cut(s) 245, 336
EgeI GGCGCC 1 cut(s) 268
EheI GGCGCC 1 cut(s) 268
FaeI CATG 4 cut(s) 361, 463, 530, 638
FaiI YATR 7 cut(s) 247, 359, 461, 512, 528, 618, 636
FaqI GGGAC 1 cut(s) 218
FatI CATG 4 cut(s) 357, 459, 526, 634
FauI CCCGC 1 cut(s) 321
FbaI TGATCA 1 cut(s) 631
FblI GTMKAC 1 cut(s) 411
FokI GGATG 1 cut(s) 599
FriOI GRGCYC 2 cut(s) 245, 336
FspBI CTAG 1 cut(s) 660
GlaI GCGC 2 cut(s) 261, 268
HaeII RGCGCY 2 cut(s) 263, 270
HaeIII GGCC 1 cut(s) 216
HapII CCGG 5 cut(s) 69, 118, 160, 213, 292
HgaI GACGC 1 cut(s) 133
HhaI GCGC 2 cut(s) 262, 269
Hin1I GRCGYC 2 cut(s) 144, 267
Hin1II CATG 4 cut(s) 361, 463, 530, 638
Hin6I GCGC 2 cut(s) 260, 267
HinP1I GCGC 2 cut(s) 260, 267
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HinfI GANTC 4 cut(s) 14, 65, 125, 523
HpaII CCGG 5 cut(s) 69, 118, 160, 213, 292
HphI GGTGA 2 cut(s) 23, 638
Hpy166II GTNNAC 3 cut(s) 280, 412, 487
Hpy188I TCNGA 3 cut(s) 62, 377, 388
Hpy188III TCNNGA 6 cut(s) 69, 238, 402, 404, 527, 635
Hpy8I GTNNAC 3 cut(s) 280, 412, 487
Hpy99I CGWCG 3 cut(s) 149, 377, 416
HpyAV CCTTC 4 cut(s) 313, 416, 440, 598
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4IV ACGT 3 cut(s) 312, 467, 489
HpyCH4V TGCA 1 cut(s) 437
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpyF3I CTNAG 2 cut(s) 519, 651
HpySE526I ACGT 3 cut(s) 312, 467, 489
Hsp92I GRCGYC 2 cut(s) 144, 267
Hsp92II CATG 4 cut(s) 361, 463, 530, 638
HspAI GCGC 2 cut(s) 260, 267
KasI GGCGCC 1 cut(s) 266
Kpn2I TCCGGA 1 cut(s) 68
KroI GCCGGC 1 cut(s) 212
KroNI GCCGGC 1 cut(s) 214
Ksp22I TGATCA 1 cut(s) 631
Kzo9I GATC 4 cut(s) 18, 57, 183, 631
LmnI GCTCC 3 cut(s) 331, 339, 493
MaeI CTAG 1 cut(s) 660
MaeII ACGT 3 cut(s) 312, 467, 489
MaeIII GTNAC 1 cut(s) 640
MalI GATC 4 cut(s) 20, 59, 185, 633
MboI GATC 4 cut(s) 18, 57, 183, 631
MboII GAAGA 3 cut(s) 38, 431, 578
MhlI GDGCHC 2 cut(s) 245, 336
MluCI AATT 6 cut(s) 85, 113, 149, 198, 349, 676
Mly113I GGCGCC 1 cut(s) 267
MlyI GAGTC 1 cut(s) 59
MmeI TCCRAC 3 cut(s) 102, 355, 366
MnlI CCTC 5 cut(s) 380, 400, 409, 433, 531
MroI TCCGGA 1 cut(s) 68
MroNI GCCGGC 1 cut(s) 212
MseI TTAA 1 cut(s) 45
MslI CAYNNNNRTG 2 cut(s) 275, 621
MspI CCGG 5 cut(s) 69, 118, 160, 213, 292
MspR9I CCNGG 2 cut(s) 97, 292
MvaI CCWGG 1 cut(s) 97
MvnI CGCG 1 cut(s) 339
MwoI GCNNNNNNNGC 1 cut(s) 266
NaeI GCCGGC 1 cut(s) 214
NarI GGCGCC 1 cut(s) 267
NciI CCSGG 1 cut(s) 292
NdeII GATC 4 cut(s) 18, 57, 183, 631
NgoMIV GCCGGC 1 cut(s) 212
NlaIII CATG 4 cut(s) 361, 463, 530, 638
NlaIV GGNNCC 1 cut(s) 268
NspV TTCGAA 1 cut(s) 306
PaeR7I CTCGAG 1 cut(s) 402
PagI TCATGA 2 cut(s) 526, 634
PcsI WCGNNNNNNNCGW 1 cut(s) 578
PdiI GCCGGC 1 cut(s) 214
PfeI GAWTC 3 cut(s) 14, 125, 523
PflFI GACNNNGTC 1 cut(s) 359
PfoI TCCNGGA 1 cut(s) 290
Ple19I CGATCG 1 cut(s) 21
PleI GAGTC 1 cut(s) 59
PluTI GGCGCC 1 cut(s) 270
PpsI GAGTC 1 cut(s) 59
Psp124BI GAGCTC 2 cut(s) 245, 336
Psp6I CCWGG 1 cut(s) 95
PspGI CCWGG 1 cut(s) 95
PspN4I GGNNCC 1 cut(s) 268
PsyI GACNNNGTC 1 cut(s) 359
PvuI CGATCG 1 cut(s) 21
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
RseI CAYNNNNRTG 2 cut(s) 275, 621
SacI GAGCTC 2 cut(s) 245, 336
SalI GTCGAC 1 cut(s) 410
SaqAI TTAA 1 cut(s) 45
Sau3AI GATC 4 cut(s) 18, 57, 183, 631
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 2 cut(s) 97, 292
SduI GDGCHC 2 cut(s) 245, 336
SetI ASST 8 cut(s) 101, 174, 245, 315, 336, 411, 470, 492
SfoI GGCGCC 1 cut(s) 268
Sfr274I CTCGAG 1 cut(s) 402
SfuI TTCGAA 1 cut(s) 306
SlaI CTCGAG 1 cut(s) 402
SmiMI CAYNNNNRTG 2 cut(s) 275, 621
SmlI CTYRAG 1 cut(s) 402
SmoI CTYRAG 1 cut(s) 402
Sse9I AATT 6 cut(s) 85, 113, 149, 198, 349, 676
SsiI CCGC 2 cut(s) 328, 337
SspDI GGCGCC 1 cut(s) 266
SspMI CTAG 1 cut(s) 660
SstI GAGCTC 2 cut(s) 245, 336
StyD4I CCNGG 2 cut(s) 95, 290
TaaI ACNGT 1 cut(s) 254
TaiI ACGT 3 cut(s) 315, 470, 492
TaqI TCGA 8 cut(s) 17, 21, 83, 147, 306, 354, 403, 411
TasI AATT 6 cut(s) 85, 113, 149, 198, 349, 676
TfiI GAWTC 3 cut(s) 14, 125, 523
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 1 cut(s) 214
TspDTI ATGAA 4 cut(s) 39, 448, 515, 651
TspRI CASTG 1 cut(s) 214
Tth111I GACNNNGTC 1 cut(s) 359
XapI RAATTY 4 cut(s) 85, 113, 149, 198
XhoI CTCGAG 1 cut(s) 402
XmiI GTMKAC 1 cut(s) 411
XspI CTAG 1 cut(s) 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.