Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0011926

Physical Location & Seq

Genomic Coordinates Forward (+)

1103571 .. 1106187

Gene Structure 2617 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG016600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGATTTCATCTCCTTATGGCTTCGATTTGGACATATCCCATATATACATATAAATACATATATATATTTGAGCAGTGAGCTTGACTCTTTTTCATTTCTCTTGTGCTTTCCTGCCCCTTTCACAGTTTATTGCTTAACTGGTTTCCCTTCTTGTTTTATTAGTTCCTTCTTGTTGTTGCTTAAGGAATCAGTTATGAAGAACTCATCGGTGTTCATGGTGGATTCCGTTGATGAAGACTGTGATTATCTGTTCAAGGCGGTTTTGATCGGGGACTCTGGAGTTGGGAAATCAAACTTGCTGTCCAGGTTTTCGAAAGGCGAATTCCGGCTGGATTCCAAGCCCACCATCGGTGTCGAGTTCGCTTACCGGAATATCAAGGTTGGTGACAGACTCGTCAAGGCTCAAATATGGGACACTGCCGGCCAAGAAAGATTCAGAGCGATCACCAGTTCATACTACCGTGGAGCGCTTGGTTCGATACTAGTGTATGACATAACTCGGCGAAAATCCTTTGAGAATGTGGAGAAATGGTTGCGTGAGCTCCGGGAGTATGGTAATTCGGATATGGTTATTGTTCTTGTAGGAAACAAATTGGATTTGAGCCACTCGAGAGAGGTCACCGAGGAAGAAGGTAAAAATTTTGCGGAGGCGGAAGGGATATGTTTCATGGAAACTTCGGCTCTAGAGAATGTGAATGTTGACAGACTTTTTTTGGATATGATTTCTAAGATTCATGAAATAACGAGCCACAAGAGTTTGGACACCAAAATGGATGATCAAACTAGTGCGAGTCTTCACGCTGCGAAAGAAATCATTCATATTGATGATGATAATGAAGTCACGGCTACTAAACAATCTAGTTATTGTTGCTCGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0012505 GO:0016020 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0071944 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

293

Amino Acids

33.35

Weight (kDa)

5.25

Isoelectric Point (pI)

38.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	85 - 212	5.3e-13	ADP-ribosylation factor family
Ras	PF00071	86 - 246	6.7e-61	Ras family
Roc	PF08477	86 - 200	2.2e-33	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18200 AT1G73640
fragaria_vesca	FvH4_5g17230
malus_domestica	MD06G1230900.v1.1 MD14G1235500.v1.1
prunus_persica	Prupe.5G232200_v2.0.a1
pyrus_communis	pycom06g20230 pycom14g19640
rosa_chinensis	RchiOBHm_Chr7g0178561
rosa_laevigata	RLG00000005437
rosa_multiflora	Rmu_sc0012505.1_g000002 Rmu_sc0021447.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274810
rosa_rugosa	Rorug06G0417900
rosa_samantha	Rh7AG016600 Rh7BG016100 Rh7CG016800 Rh7DG016700
rosa_wichuraiana	Rw7G001320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	395
AciI	CCGC	3 cut(s)	260, 647, 653
AcoI	YGGCCR	1 cut(s)	424
AcsI	RAATTY	2 cut(s)	323, 640
AfeI	AGCGCT	1 cut(s)	471
AfiI	CCNNNNNNNGG	1 cut(s)	350
AflII	CTTAAG	1 cut(s)	182
AgsI	TTSAA	1 cut(s)	256
AhlI	ACTAGT	2 cut(s)	484, 785
AjnI	CCWGG	1 cut(s)	305
AluBI	AGCT	2 cut(s)	82, 544
AluI	AGCT	2 cut(s)	82, 544
Alw21I	GWGCWC	1 cut(s)	546
Ama87I	CYCGRG	2 cut(s)	610, 874
Aor51HI	AGCGCT	1 cut(s)	471
AoxI	GGCC	1 cut(s)	424
ApeKI	GCWGC	1 cut(s)	803
ApoI	RAATTY	2 cut(s)	323, 640
ArsI	GACNNNNNNTTYG	2 cut(s)	287, 319
Asp700I	GAANNNNTTC	1 cut(s)	816
AspLEI	GCGC	1 cut(s)	472
AsuC2I	CCSGG	1 cut(s)	548
AsuHPI	GGTGA	3 cut(s)	398, 439, 613
AsuII	TTCGAA	1 cut(s)	314
AvaI	CYCGRG	2 cut(s)	610, 874
BaeI	ACNNNNGTAYC	2 cut(s)	473, 506
BanII	GRGCYC	1 cut(s)	546
BbsI	GAAGAC	2 cut(s)	243, 788
Bbv12I	GWGCWC	1 cut(s)	546
BbvI	GCAGC	1 cut(s)	790
BccI	CCATC	1 cut(s)	356
BceAI	ACGGC	1 cut(s)	861
BciT130I	CCWGG	1 cut(s)	307
BclI	TGATCA	1 cut(s)	778
BcnI	CCSGG	1 cut(s)	548
BcuI	ACTAGT	2 cut(s)	484, 785
BfaI	CTAG	4 cut(s)	485, 686, 786, 861
BfoI	RGCGCY	1 cut(s)	473
BfrI	CTTAAG	1 cut(s)	182
BisI	GCNGC	1 cut(s)	804
BlsI	GCNGC	1 cut(s)	805
Bme1390I	CCNGG	2 cut(s)	307, 548
BmeT110I	CYCGRG	2 cut(s)	610, 874
BmrFI	CCNGG	2 cut(s)	307, 548
BpiI	GAAGAC	2 cut(s)	243, 788
BplI	GAGNNNNNCTC	2 cut(s)	71, 103
BpmI	CTGGAG	1 cut(s)	300
Bpu14I	TTCGAA	1 cut(s)	314
BpuMI	CCSGG	1 cut(s)	548
BsaJI	CCNNGG	2 cut(s)	463, 624
BsaWI	WCCGGW	1 cut(s)	369
BsaXI	ACNNNNNCTCC	2 cut(s)	518, 548
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse118I	RCCGGY	1 cut(s)	422
Bse1I	ACTGG	2 cut(s)	145, 450
BseBI	CCWGG	1 cut(s)	307
BseDI	CCNNGG	2 cut(s)	463, 624
BseGI	GGATG	1 cut(s)	781
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseNI	ACTGG	2 cut(s)	145, 450
BseXI	GCAGC	1 cut(s)	790
BshFI	GGCC	1 cut(s)	426
BsiHKAI	GWGCWC	1 cut(s)	546
BsiHKCI	CYCGRG	2 cut(s)	610, 874
BsiSI	CCGG	4 cut(s)	328, 370, 423, 547
BslFI	GGGAC	2 cut(s)	287, 428
BslI	CCNNNNNNNGG	1 cut(s)	350
BsmFI	GGGAC	2 cut(s)	287, 428
BsnI	GGCC	1 cut(s)	426
BsoBI	CYCGRG	2 cut(s)	610, 874
Bsp119I	TTCGAA	1 cut(s)	314
Bsp1286I	GDGCHC	1 cut(s)	546
Bsp143I	GATC	3 cut(s)	267, 444, 778
BspACI	CCGC	3 cut(s)	260, 647, 653
BspANI	GGCC	1 cut(s)	426
BspHI	TCATGA	1 cut(s)	736
BspT104I	TTCGAA	1 cut(s)	314
BspTI	CTTAAG	1 cut(s)	182
BsrFI	RCCGGY	1 cut(s)	422
BsrI	ACTGG	2 cut(s)	145, 450
BssAI	RCCGGY	1 cut(s)	422
BssECI	CCNNGG	2 cut(s)	463, 624
BssMI	GATC	3 cut(s)	267, 444, 778
Bst2UI	CCWGG	1 cut(s)	307
Bst4CI	ACNGT	3 cut(s)	127, 242, 464
BstAFI	CTTAAG	1 cut(s)	182
BstBI	TTCGAA	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	424
BstDEI	CTNAG	1 cut(s)	729
BstDSI	CCRYGG	1 cut(s)	463
BstEII	GGTNACC	1 cut(s)	619
BstF5I	GGATG	1 cut(s)	781
BstH2I	RGCGCY	1 cut(s)	473
BstHHI	GCGC	1 cut(s)	472
BstKTI	GATC	3 cut(s)	270, 447, 781
BstMBI	GATC	3 cut(s)	267, 444, 778
BstNI	CCWGG	1 cut(s)	307
BstPI	GGTNACC	1 cut(s)	619
BstSCI	CCNGG	2 cut(s)	305, 546
BstV1I	GCAGC	1 cut(s)	790
BstV2I	GAAGAC	2 cut(s)	243, 788
BsuRI	GGCC	1 cut(s)	426
BtgI	CCRYGG	1 cut(s)	463
BtsCI	GGATG	1 cut(s)	781
BtsI	GCAGTG	2 cut(s)	82, 417
BtsIMutI	CAGTG	2 cut(s)	82, 417
Cac8I	GCNNGC	1 cut(s)	424
CciI	TCATGA	1 cut(s)	736
CfoI	GCGC	1 cut(s)	472
Cfr10I	RCCGGY	1 cut(s)	422
CviAII	CATG	3 cut(s)	217, 670, 737
DdeI	CTNAG	1 cut(s)	729
DpnI	GATC	3 cut(s)	269, 446, 780
DpnII	GATC	3 cut(s)	267, 444, 778
DrdI	GACNNNNNNGTC	1 cut(s)	395
DseDI	GACNNNNNNGTC	1 cut(s)	395
EaeI	YGGCCR	1 cut(s)	424
EciI	GGCGGA	1 cut(s)	668
Ecl136II	GAGCTC	1 cut(s)	544
Eco24I	GRGCYC	1 cut(s)	546
Eco47III	AGCGCT	1 cut(s)	471
Eco53kI	GAGCTC	1 cut(s)	544
Eco88I	CYCGRG	2 cut(s)	610, 874
Eco91I	GGTNACC	1 cut(s)	619
EcoICRI	GAGCTC	1 cut(s)	544
EcoO65I	GGTNACC	1 cut(s)	619
EcoRI	GAATTC	1 cut(s)	323
EcoRII	CCWGG	1 cut(s)	305
EcoT38I	GRGCYC	1 cut(s)	546
FaeI	CATG	3 cut(s)	220, 673, 740
FaqI	GGGAC	2 cut(s)	287, 428
FatI	CATG	3 cut(s)	216, 669, 736
FbaI	TGATCA	1 cut(s)	778
Fnu4HI	GCNGC	1 cut(s)	804
FokI	GGATG	1 cut(s)	788
FriOI	GRGCYC	1 cut(s)	546
Fsp4HI	GCNGC	1 cut(s)	804
FspBI	CTAG	4 cut(s)	485, 686, 786, 861
GlaI	GCGC	1 cut(s)	471
GluI	GCNGC	1 cut(s)	804
GsuI	CTGGAG	1 cut(s)	300
HaeII	RGCGCY	1 cut(s)	473
HaeIII	GGCC	1 cut(s)	426
HapII	CCGG	4 cut(s)	328, 370, 423, 547
HhaI	GCGC	1 cut(s)	472
Hin1II	CATG	3 cut(s)	220, 673, 740
Hin6I	GCGC	1 cut(s)	470
HinP1I	GCGC	1 cut(s)	470
HincII	GTYRAC	1 cut(s)	703
HindII	GTYRAC	1 cut(s)	703
HinfI	GANTC	9 cut(s)	86, 188, 224, 275, 335, 393, 435, 733, 793
HpaII	CCGG	4 cut(s)	328, 370, 423, 547
HphI	GGTGA	3 cut(s)	398, 439, 613
Hpy166II	GTNNAC	1 cut(s)	703
Hpy188I	TCNGA	2 cut(s)	440, 565
Hpy188III	TCNNGA	5 cut(s)	279, 612, 686, 737, 876
Hpy8I	GTNNAC	1 cut(s)	703
HpyAV	CCTTC	4 cut(s)	159, 178, 626, 650
HpyCH4III	ACNGT	3 cut(s)	127, 242, 464
HpyF3I	CTNAG	1 cut(s)	729
Hsp92II	CATG	3 cut(s)	220, 673, 740
HspAI	GCGC	1 cut(s)	470
KroI	GCCGGC	1 cut(s)	422
KroNI	GCCGGC	1 cut(s)	424
Ksp22I	TGATCA	1 cut(s)	778
Kzo9I	GATC	3 cut(s)	267, 444, 778
LmnI	GCTCC	2 cut(s)	467, 549
Lsp1109I	GCAGC	1 cut(s)	790
MaeI	CTAG	4 cut(s)	485, 686, 786, 861
MaeIII	GTNAC	3 cut(s)	386, 619, 841
MalI	GATC	3 cut(s)	269, 446, 780
MboI	GATC	3 cut(s)	267, 444, 778
MboII	GAAGA	4 cut(s)	211, 248, 641, 788
MhlI	GDGCHC	1 cut(s)	546
MluCI	AATT	4 cut(s)	323, 559, 593, 640
MlyI	GAGTC	4 cut(s)	80, 269, 387, 802
MnlI	CCTC	3 cut(s)	610, 619, 643
MroNI	GCCGGC	1 cut(s)	422
MroXI	GAANNNNTTC	1 cut(s)	816
MseI	TTAA	2 cut(s)	137, 183
MslI	CAYNNNNRTG	2 cut(s)	770, 825
MspCI	CTTAAG	1 cut(s)	182
MspI	CCGG	4 cut(s)	328, 370, 423, 547
MspR9I	CCNGG	2 cut(s)	307, 548
MvaI	CCWGG	1 cut(s)	307
NaeI	GCCGGC	1 cut(s)	424
NciI	CCSGG	1 cut(s)	548
NdeII	GATC	3 cut(s)	267, 444, 778
NgoMIV	GCCGGC	1 cut(s)	422
NlaIII	CATG	3 cut(s)	220, 673, 740
NmeAIII	GCCGAG	1 cut(s)	481
NmuCI	GTSAC	3 cut(s)	386, 619, 841
NspV	TTCGAA	1 cut(s)	314
PaeR7I	CTCGAG	2 cut(s)	610, 874
PagI	TCATGA	1 cut(s)	736
PdiI	GCCGGC	1 cut(s)	424
PdmI	GAANNNNTTC	1 cut(s)	816
PfeI	GAWTC	5 cut(s)	188, 224, 335, 435, 733
PfoI	TCCNGGA	1 cut(s)	546
PkrI	GCNGC	1 cut(s)	805
PleI	GAGTC	4 cut(s)	80, 269, 387, 801
PpsI	GAGTC	4 cut(s)	80, 269, 387, 801
Psp124BI	GAGCTC	1 cut(s)	546
Psp6I	CCWGG	1 cut(s)	305
PspEI	GGTNACC	1 cut(s)	619
PspGI	CCWGG	1 cut(s)	305
RseI	CAYNNNNRTG	2 cut(s)	770, 825
SacI	GAGCTC	1 cut(s)	546
SaqAI	TTAA	2 cut(s)	137, 183
SatI	GCNGC	1 cut(s)	804
Sau3AI	GATC	3 cut(s)	267, 444, 778
SchI	GAGTC	4 cut(s)	80, 269, 387, 802
ScrFI	CCNGG	2 cut(s)	307, 548
SduI	GDGCHC	1 cut(s)	546
SetI	ASST	6 cut(s)	84, 311, 384, 546, 621, 637
Sfr274I	CTCGAG	2 cut(s)	610, 874
SfuI	TTCGAA	1 cut(s)	314
SlaI	CTCGAG	2 cut(s)	610, 874
SmiMI	CAYNNNNRTG	2 cut(s)	770, 825
SmlI	CTYRAG	3 cut(s)	182, 610, 874
SmoI	CTYRAG	3 cut(s)	182, 610, 874
SpeI	ACTAGT	2 cut(s)	484, 785
Sse9I	AATT	4 cut(s)	323, 559, 593, 640
SsiI	CCGC	3 cut(s)	260, 647, 653
SspMI	CTAG	4 cut(s)	485, 686, 786, 861
SstI	GAGCTC	1 cut(s)	546
StyD4I	CCNGG	2 cut(s)	305, 546
TaaI	ACNGT	3 cut(s)	127, 242, 464
TaqI	TCGA	6 cut(s)	25, 314, 357, 479, 611, 875
TasI	AATT	4 cut(s)	323, 559, 593, 640
TfiI	GAWTC	5 cut(s)	188, 224, 335, 435, 733
Tru1I	TTAA	2 cut(s)	137, 183
Tru9I	TTAA	2 cut(s)	137, 183
TscAI	CASTG	2 cut(s)	82, 424
TseFI	GTSAC	3 cut(s)	386, 619, 841
TseI	GCWGC	1 cut(s)	803
Tsp45I	GTSAC	3 cut(s)	386, 619, 841
TspGWI	ACGGA	1 cut(s)	217
TspRI	CASTG	2 cut(s)	82, 424
Vha464I	CTTAAG	1 cut(s)	182
XapI	RAATTY	2 cut(s)	323, 640
XbaI	TCTAGA	1 cut(s)	685
XhoI	CTCGAG	2 cut(s)	610, 874
XmnI	GAANNNNTTC	1 cut(s)	816
XspI	CTAG	4 cut(s)	485, 686, 786, 861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.