Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0011926

Physical Location & Seq

Genomic Coordinates Reverse (-)

9845385 .. 9847896

Gene Structure 2512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g17230.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGAAGAACTCATCGGTGTTCATGGCGGATTCCGTTGATGAAGACTGTGATTATCTGTTCAAGGCGGTTTTGATCGGGGACTCTGGAGTTGGGAAATCAAACTTGCTGTCCAGGTTTTCCAAAGACGAATTCCGGCTGGATTCCAAGCCCACCATCGGTGTCGAATTCGCTTACCGGAATATCAAGGTTGGTGATAAACTCGTCAAGGCTCAGATATGGGACACTGCCGGCCAAGAAAGATTCAGAGCGATCACCAGTTCATACTACCGTGGAGCGCTAGGTTCGATACTAGTGTATGACATAACACGGCGAAAATCCTTCGACAATGTGGATAAATGGTTGCGTGAGCTCCGCGAGTATGGTAATTCCGATATGGTTATAGTTCTTGTGGGGAACAAATCGGATTTGAGTTACTCGAGAGAGGTCACCGAGGAAGAAGGTAAAAATTTTGCAGAGGCAGAAGGGATATGTTTCATGGAAACTTCAGCTCTAGAGAATGTGAACGTCGAGAGACTATTCTTGGATATGATTTCTAAGATTCACGAAATAACGAGCCAAAAGATTTTGGACACCAAAATGGATGATCAAACTAGTGCAAGTCTTCAGTCTGCGAAAGAAATCATACATATTGATGATGATAGTGAAGTCACGGCTACTAAACAATCAAGTTATTGTTGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0012505 GO:0016020 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0071944 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

228

Amino Acids

25.63

Weight (kDa)

4.84

Isoelectric Point (pI)

36.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	20 - 145	2.6e-13	ADP-ribosylation factor family
Ras	PF00071	21 - 181	3.5e-61	Ras family
Roc	PF08477	21 - 135	7e-34	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	22 - 129	1.6e-06	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18200 AT1G73640
fragaria_vesca	FvH4_5g17230
malus_domestica	MD06G1230900.v1.1 MD14G1235500.v1.1
prunus_persica	Prupe.5G232200_v2.0.a1
pyrus_communis	pycom06g20230 pycom14g19640
rosa_chinensis	RchiOBHm_Chr7g0178561
rosa_laevigata	RLG00000005437
rosa_multiflora	Rmu_sc0012505.1_g000002 Rmu_sc0021447.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274810
rosa_rugosa	Rorug06G0417900
rosa_samantha	Rh7AG016600 Rh7BG016100 Rh7CG016800 Rh7DG016700
rosa_wichuraiana	Rw7G001320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	354
AciI	CCGC	3 cut(s)	26, 65, 352
AcoI	YGGCCR	1 cut(s)	229
AcsI	RAATTY	3 cut(s)	128, 164, 445
AcuI	CTGAAG	2 cut(s)	468, 587
AfeI	AGCGCT	1 cut(s)	276
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	61
AhlI	ACTAGT	2 cut(s)	289, 590
AjnI	CCWGG	1 cut(s)	110
AjuI	GAANNNNNNNTTGG	2 cut(s)	113, 145
AluBI	AGCT	2 cut(s)	349, 488
AluI	AGCT	2 cut(s)	349, 488
Alw21I	GWGCWC	1 cut(s)	351
Alw26I	GTCTC	1 cut(s)	505
Ama87I	CYCGRG	1 cut(s)	415
Aor51HI	AGCGCT	1 cut(s)	276
AoxI	GGCC	1 cut(s)	229
ApoI	RAATTY	3 cut(s)	128, 164, 445
ArsI	GACNNNNNNTTYG	2 cut(s)	92, 124
AspLEI	GCGC	1 cut(s)	277
AsuHPI	GGTGA	3 cut(s)	203, 244, 418
AvaI	CYCGRG	1 cut(s)	415
BaeI	ACNNNNGTAYC	2 cut(s)	278, 311
BanII	GRGCYC	1 cut(s)	351
BbsI	GAAGAC	2 cut(s)	48, 593
Bbv12I	GWGCWC	1 cut(s)	351
BccI	CCATC	1 cut(s)	161
BceAI	ACGGC	2 cut(s)	323, 666
BciT130I	CCWGG	1 cut(s)	112
BclI	TGATCA	1 cut(s)	583
BcoDI	GTCTC	1 cut(s)	505
BcuI	ACTAGT	2 cut(s)	289, 590
BfaI	CTAG	4 cut(s)	278, 290, 491, 591
BfoI	RGCGCY	1 cut(s)	278
Bme1390I	CCNGG	1 cut(s)	112
BmeT110I	CYCGRG	1 cut(s)	415
BmrFI	CCNGG	1 cut(s)	112
BpiI	GAAGAC	2 cut(s)	48, 593
BpmI	CTGGAG	1 cut(s)	105
BsaJI	CCNNGG	2 cut(s)	268, 429
BsaWI	WCCGGW	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse118I	RCCGGY	1 cut(s)	227
Bse1I	ACTGG	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	112
BseDI	CCNNGG	2 cut(s)	268, 429
BseGI	GGATG	1 cut(s)	586
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMII	CTCAG	1 cut(s)	224
BseNI	ACTGG	1 cut(s)	255
Bsh1236I	CGCG	1 cut(s)	354
BshFI	GGCC	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	351
BsiHKCI	CYCGRG	1 cut(s)	415
BsiSI	CCGG	3 cut(s)	133, 175, 228
BslFI	GGGAC	2 cut(s)	92, 233
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmAI	GTCTC	1 cut(s)	505
BsmFI	GGGAC	2 cut(s)	92, 233
BsnI	GGCC	1 cut(s)	231
BsoBI	CYCGRG	1 cut(s)	415
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	3 cut(s)	72, 249, 583
BspACI	CCGC	3 cut(s)	26, 65, 352
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	1 cut(s)	223
BspFNI	CGCG	1 cut(s)	354
BspHI	TCATGA	1 cut(s)	680
BsrFI	RCCGGY	1 cut(s)	227
BsrI	ACTGG	1 cut(s)	255
BssAI	RCCGGY	1 cut(s)	227
BssECI	CCNNGG	2 cut(s)	268, 429
BssMI	GATC	3 cut(s)	72, 249, 583
Bst2UI	CCWGG	1 cut(s)	112
Bst4CI	ACNGT	2 cut(s)	47, 269
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	2 cut(s)	210, 534
BstDSI	CCRYGG	1 cut(s)	268
BstEII	GGTNACC	1 cut(s)	424
BstF5I	GGATG	1 cut(s)	586
BstFNI	CGCG	1 cut(s)	354
BstH2I	RGCGCY	1 cut(s)	278
BstHHI	GCGC	1 cut(s)	277
BstKTI	GATC	3 cut(s)	75, 252, 586
BstMAI	GTCTC	1 cut(s)	505
BstMBI	GATC	3 cut(s)	72, 249, 583
BstNI	CCWGG	1 cut(s)	112
BstPI	GGTNACC	1 cut(s)	424
BstSCI	CCNGG	1 cut(s)	110
BstUI	CGCG	1 cut(s)	354
BstV2I	GAAGAC	2 cut(s)	48, 593
BsuRI	GGCC	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	268
BtsCI	GGATG	1 cut(s)	586
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	1 cut(s)	229
CciI	TCATGA	1 cut(s)	680
CfoI	GCGC	1 cut(s)	277
Cfr10I	RCCGGY	1 cut(s)	227
CviAII	CATG	3 cut(s)	22, 475, 681
CviJI	RGCY	8 cut(s)	136, 148, 209, 231, 349, 488, 555, 653
CviKI_1	RGCY	8 cut(s)	136, 148, 209, 231, 349, 488, 555, 653
DdeI	CTNAG	2 cut(s)	210, 534
DpnI	GATC	3 cut(s)	74, 251, 585
DpnII	GATC	3 cut(s)	72, 249, 583
EaeI	YGGCCR	1 cut(s)	229
EciI	GGCGGA	1 cut(s)	41
Ecl136II	GAGCTC	1 cut(s)	349
Eco24I	GRGCYC	1 cut(s)	351
Eco47III	AGCGCT	1 cut(s)	276
Eco53kI	GAGCTC	1 cut(s)	349
Eco57I	CTGAAG	2 cut(s)	468, 587
Eco88I	CYCGRG	1 cut(s)	415
Eco91I	GGTNACC	1 cut(s)	424
EcoICRI	GAGCTC	1 cut(s)	349
EcoO65I	GGTNACC	1 cut(s)	424
EcoRI	GAATTC	2 cut(s)	128, 164
EcoRII	CCWGG	1 cut(s)	110
EcoT38I	GRGCYC	1 cut(s)	351
FaeI	CATG	3 cut(s)	25, 478, 684
FaqI	GGGAC	2 cut(s)	92, 233
FatI	CATG	3 cut(s)	21, 474, 680
FbaI	TGATCA	1 cut(s)	583
FokI	GGATG	1 cut(s)	593
FriOI	GRGCYC	1 cut(s)	351
FspBI	CTAG	4 cut(s)	278, 290, 491, 591
GlaI	GCGC	1 cut(s)	276
GsuI	CTGGAG	1 cut(s)	105
HaeII	RGCGCY	1 cut(s)	278
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	3 cut(s)	133, 175, 228
HhaI	GCGC	1 cut(s)	277
Hin1II	CATG	3 cut(s)	25, 478, 684
Hin6I	GCGC	1 cut(s)	275
HinP1I	GCGC	1 cut(s)	275
HinfI	GANTC	5 cut(s)	29, 80, 140, 240, 538
HpaII	CCGG	3 cut(s)	133, 175, 228
HphI	GGTGA	3 cut(s)	203, 244, 418
Hpy166II	GTNNAC	1 cut(s)	502
Hpy188I	TCNGA	4 cut(s)	213, 245, 370, 403
Hpy188III	TCNNGA	6 cut(s)	84, 417, 491, 508, 542, 681
Hpy8I	GTNNAC	1 cut(s)	502
Hpy99I	CGWCG	1 cut(s)	509
HpyAV	CCTTC	3 cut(s)	328, 431, 455
HpyCH4III	ACNGT	2 cut(s)	47, 269
HpyCH4IV	ACGT	1 cut(s)	504
HpyCH4V	TGCA	2 cut(s)	452, 596
HpyF3I	CTNAG	2 cut(s)	210, 534
HpySE526I	ACGT	1 cut(s)	504
Hsp92II	CATG	3 cut(s)	25, 478, 684
HspAI	GCGC	1 cut(s)	275
KroI	GCCGGC	1 cut(s)	227
KroNI	GCCGGC	1 cut(s)	229
Ksp22I	TGATCA	1 cut(s)	583
Kzo9I	GATC	3 cut(s)	72, 249, 583
LmnI	GCTCC	2 cut(s)	272, 354
LpnPI	CCDG	8 cut(s)	69, 97, 122, 124, 146, 188, 241, 268
MaeI	CTAG	4 cut(s)	278, 290, 491, 591
MaeII	ACGT	1 cut(s)	504
MaeIII	GTNAC	3 cut(s)	410, 424, 646
MalI	GATC	3 cut(s)	74, 251, 585
MboI	GATC	3 cut(s)	72, 249, 583
MboII	GAAGA	4 cut(s)	16, 53, 446, 593
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	4 cut(s)	128, 164, 364, 445
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	3 cut(s)	415, 424, 448
MroNI	GCCGGC	1 cut(s)	227
MslI	CAYNNNNRTG	2 cut(s)	575, 630
MspI	CCGG	3 cut(s)	133, 175, 228
MspR9I	CCNGG	1 cut(s)	112
MvaI	CCWGG	1 cut(s)	112
MvnI	CGCG	1 cut(s)	354
NaeI	GCCGGC	1 cut(s)	229
NdeII	GATC	3 cut(s)	72, 249, 583
NgoMIV	GCCGGC	1 cut(s)	227
NlaIII	CATG	3 cut(s)	25, 478, 684
NmuCI	GTSAC	2 cut(s)	424, 646
PaeR7I	CTCGAG	1 cut(s)	415
PagI	TCATGA	1 cut(s)	680
PdiI	GCCGGC	1 cut(s)	229
PfeI	GAWTC	4 cut(s)	29, 140, 240, 538
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
Psp124BI	GAGCTC	1 cut(s)	351
Psp6I	CCWGG	1 cut(s)	110
PspEI	GGTNACC	1 cut(s)	424
PspGI	CCWGG	1 cut(s)	110
RseI	CAYNNNNRTG	2 cut(s)	575, 630
SacI	GAGCTC	1 cut(s)	351
Sau3AI	GATC	3 cut(s)	72, 249, 583
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	1 cut(s)	112
SduI	GDGCHC	1 cut(s)	351
SetI	ASST	8 cut(s)	116, 189, 283, 351, 426, 442, 490, 507
Sfr274I	CTCGAG	1 cut(s)	415
SlaI	CTCGAG	1 cut(s)	415
SmiMI	CAYNNNNRTG	2 cut(s)	575, 630
SmlI	CTYRAG	1 cut(s)	415
SmoI	CTYRAG	1 cut(s)	415
SpeI	ACTAGT	2 cut(s)	289, 590
Sse9I	AATT	4 cut(s)	128, 164, 364, 445
SsiI	CCGC	3 cut(s)	26, 65, 352
SspMI	CTAG	4 cut(s)	278, 290, 491, 591
SstI	GAGCTC	1 cut(s)	351
StyD4I	CCNGG	1 cut(s)	110
TaaI	ACNGT	2 cut(s)	47, 269
TaiI	ACGT	1 cut(s)	507
TaqI	TCGA	5 cut(s)	162, 284, 321, 416, 507
TasI	AATT	4 cut(s)	128, 164, 364, 445
TfiI	GAWTC	4 cut(s)	29, 140, 240, 538
TscAI	CASTG	1 cut(s)	229
TseFI	GTSAC	2 cut(s)	424, 646
Tsp45I	GTSAC	2 cut(s)	424, 646
TspDTI	ATGAA	5 cut(s)	10, 17, 54, 249, 463
TspGWI	ACGGA	1 cut(s)	22
TspRI	CASTG	1 cut(s)	229
XapI	RAATTY	3 cut(s)	128, 164, 445
XbaI	TCTAGA	1 cut(s)	490
XhoI	CTCGAG	1 cut(s)	415
XspI	CTAG	4 cut(s)	278, 290, 491, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.