Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006735

Physical Location & Seq

Genomic Coordinates Reverse (-)

55706782 .. 55709070

Gene Structure 2289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0417900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGAAGTGAAGCAAATACTTCACATGAACAAAGGGGATGACGAAACTAGTTACGCCAAAAATTCCAAAATTCAGTGCAAAATACTATCCATAACAAAGCCAATCATTGAGGAAACAGTACTGAAAATCTTGGGTTCAGATCTTGTGCCAAAACAAAGTTTTGGCATAGCAGATTTGGGTTGCTCATCTGGACCAAACTCCTTGTTACTCATTTCAGAGGTCATGGATGTCATACATGCGGAATACAGTCGCCTGACCCAGCCGAGCCTCCAGCTCCAGTCATCCACACGGGAGTTTAGAGTGTATCTCAATGACCTCTTTAGCAACGACTTCAACACCATTTTCGTGTCACTGCCAGAGTTCTACGACAAGTTCAAGCAAGACTTCAAGGATACTACTACTAGTGAGGGGCCTAATCTCTTTATTTCTGCTGTGCCTGGTTCTTTTTATGGTAGATTATTTCCCAACAAGAGCTTGCACTTTGTTCACTCTTCCTCTAGTCTTCATTGGCTCTCCCAGGTTCCCCCTGGACTAGATACAGCCTTAAACAAGGGGAAGATCTACATATCTAAGAGCAGCCCAGAATGTGTGAAGGAGGCATATTCACAGCAATTCCACAAGGACTTTTCTGTGTTTCTAAAGTCTCGCGCTGAAGAAATTGTATCCGGAGGACGAATGGTTCTGTCATTCATGGGAAGGCGATTGTCAGACCCTACAATTGAAGAGAGTTGCTATCTCCAGTGGGAGCTCTTAGCCAATGCATTAATGACCTTGGTTTTAGAGGGCTCTATTGAAGAAGAAAAAGTTGAATCGTTCCATGCTCCCTACTATGCTCCATGTCCGGACGAATTGAATTTGCAGTTACAAAAAGAAGGATCATTCGTAATGGACCGCCTTGAAGCATTCGAAATTGATTGGGATGGTGGTGCTGATCTGGATGAAAACACGAATAACACAACCAATGAAACTGTAGCAAGCAGTGGCGAGCGAGTAGCCAAGACCATAAGAGCCGTGGTGGAGTCAATGCTCGAGTCTCATTTTGGTGAAGATCTTATGATGGATACTTTGTTTCAGAGATCATTCTTGGCTTTCACGAACAATATCTATCAATCGATCTGTACGTGTGTATTGTTTTCGAATAGTTGTTTCGAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

385

Amino Acids

43.35

Weight (kDa)

4.83

Isoelectric Point (pI)

51.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_7	PF03492	50 - 361	1.2e-115	SAM dependent carboxyl methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18020
fragaria_vesca	FvH4_5g17250
malus_domestica	MD06G1231100.v1.1
prunus_persica	Prupe.5G232400_v2.0.a1
pyrus_communis	pycom06g20240
rosa_chinensis	RchiOBHm_Chr7g0178541
rosa_laevigata	RLG00000005439 RLG00000010173
rosa_multiflora	Rmu_sc0000775.1_g000015 Rmu_sc0000961.1_g000015 Rmu_sc0002421.1_g000004 Rmu_sc0003637.1_g000006 Rmu_sc0011483.1_g000001 Rmu_sc0016060.1_g000005 Rmu_ssc0000343.1_g000033
rosa_roxburghii	Rroxscaffold_3G00274830 Rroxscaffold_5G00333820
rosa_rugosa	Rorug06G0417900
rosa_samantha	Rh3CG367500 Rh4AG426400 Rh4DG434700 Rh7AG016400 Rh7BG015900 Rh7CG016600 Rh7DG016500
rosa_wichuraiana	Rw7G001300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	648
AccIII	TCCGGA	2 cut(s)	665, 841
AciI	CCGC	2 cut(s)	239, 892
AclWI	GGATC	1 cut(s)	883
AcsI	RAATTY	3 cut(s)	61, 69, 853
AcuI	CTGAAG	1 cut(s)	672
AfaI	GTAC	2 cut(s)	120, 1120
AflIII	ACRYGT	1 cut(s)	1121
AgsI	TTSAA	8 cut(s)	334, 376, 388, 722, 794, 809, 853, 899
AhlI	ACTAGT	2 cut(s)	47, 401
AjnI	CCWGG	3 cut(s)	436, 516, 526
AloI	GAACNNNNNNTCC	2 cut(s)	663, 695
AluBI	AGCT	3 cut(s)	274, 474, 748
AluI	AGCT	3 cut(s)	274, 474, 748
Alw21I	GWGCWC	1 cut(s)	750
Alw26I	GTCTC	2 cut(s)	648, 1038
AlwI	GGATC	1 cut(s)	883
Ama87I	CYCGRG	1 cut(s)	1028
Aor13HI	TCCGGA	2 cut(s)	665, 841
AoxI	GGCC	1 cut(s)	410
ApeKI	GCWGC	1 cut(s)	576
ApoI	RAATTY	3 cut(s)	61, 69, 853
AseI	ATTAAT	1 cut(s)	764
AspLEI	GCGC	1 cut(s)	650
AspS9I	GGNCC	3 cut(s)	191, 410, 889
AsuHPI	GGTGA	1 cut(s)	1055
AsuII	TTCGAA	2 cut(s)	906, 1136
AvaI	CYCGRG	1 cut(s)	1028
AvaII	GGWCC	2 cut(s)	191, 889
BanII	GRGCYC	2 cut(s)	750, 788
BbsI	GAAGAC	1 cut(s)	494
Bbv12I	GWGCWC	1 cut(s)	750
BbvI	GCAGC	1 cut(s)	588
BccI	CCATC	2 cut(s)	914, 1051
BceAI	ACGGC	1 cut(s)	995
BciT130I	CCWGG	3 cut(s)	438, 518, 528
BciVI	GTATCC	3 cut(s)	385, 673, 1054
BcoDI	GTCTC	2 cut(s)	648, 1038
BcuI	ACTAGT	2 cut(s)	47, 401
BfaI	CTAG	4 cut(s)	48, 402, 498, 533
BfmI	CTRYAG	1 cut(s)	969
BfuI	GTATCC	3 cut(s)	385, 673, 1054
BglII	AGATCT	3 cut(s)	139, 558, 1048
BisI	GCNGC	1 cut(s)	577
BlsI	GCNGC	1 cut(s)	578
BmcAI	AGTACT	1 cut(s)	120
Bme1390I	CCNGG	3 cut(s)	438, 518, 528
Bme18I	GGWCC	2 cut(s)	191, 889
BmeT110I	CYCGRG	1 cut(s)	1028
BmgT120I	GGNCC	3 cut(s)	191, 410, 889
BmiI	GGNNCC	2 cut(s)	411, 522
BmrFI	CCNGG	3 cut(s)	438, 518, 528
BpiI	GAAGAC	1 cut(s)	494
BplI	GAGNNNNNCTC	2 cut(s)	291, 323
BpmI	CTGGAG	3 cut(s)	254, 260, 722
Bpu14I	TTCGAA	2 cut(s)	906, 1136
Bsa29I	ATCGAT	1 cut(s)	1112
BsaAI	YACGTR	1 cut(s)	1122
BsaJI	CCNNGG	4 cut(s)	516, 526, 771, 1011
BsaWI	WCCGGW	2 cut(s)	665, 841
Bse1I	ACTGG	2 cut(s)	277, 739
BseAI	TCCGGA	2 cut(s)	665, 841
BseBI	CCWGG	3 cut(s)	438, 518, 528
BseCI	ATCGAT	1 cut(s)	1112
BseDI	CCNNGG	4 cut(s)	516, 526, 771, 1011
BseGI	GGATG	5 cut(s)	43, 232, 281, 925, 943
BseNI	ACTGG	2 cut(s)	277, 739
BseXI	GCAGC	1 cut(s)	588
BseYI	CCCAGC	1 cut(s)	258
Bsh1236I	CGCG	1 cut(s)	648
BshFI	GGCC	1 cut(s)	412
BshVI	ATCGAT	1 cut(s)	1112
BsiHKAI	GWGCWC	1 cut(s)	750
BsiHKCI	CYCGRG	1 cut(s)	1028
BsiSI	CCGG	2 cut(s)	666, 842
BsmAI	GTCTC	2 cut(s)	648, 1038
BsmI	GAATGC	1 cut(s)	902
BsnI	GGCC	1 cut(s)	412
BsoBI	CYCGRG	1 cut(s)	1028
Bsp119I	TTCGAA	2 cut(s)	906, 1136
Bsp1286I	GDGCHC	2 cut(s)	750, 788
Bsp13I	TCCGGA	2 cut(s)	665, 841
Bsp143I	GATC	7 cut(s)	139, 558, 875, 931, 1048, 1076, 1113
BspACI	CCGC	2 cut(s)	239, 892
BspANI	GGCC	1 cut(s)	412
BspDI	ATCGAT	1 cut(s)	1112
BspEI	TCCGGA	2 cut(s)	665, 841
BspFNI	CGCG	1 cut(s)	648
BspLI	GGNNCC	2 cut(s)	411, 522
BspPI	GGATC	1 cut(s)	883
BspT104I	TTCGAA	2 cut(s)	906, 1136
BsrI	ACTGG	2 cut(s)	277, 739
BssECI	CCNNGG	4 cut(s)	516, 526, 771, 1011
BssMI	GATC	7 cut(s)	139, 558, 875, 931, 1048, 1076, 1113
BssT1I	CCWWGG	1 cut(s)	771
Bst2UI	CCWGG	3 cut(s)	438, 518, 528
Bst4CI	ACNGT	3 cut(s)	118, 248, 970
Bst6I	CTCTTC	2 cut(s)	496, 717
BstBAI	YACGTR	1 cut(s)	1122
BstBI	TTCGAA	2 cut(s)	906, 1136
BstC8I	GCNNGC	3 cut(s)	476, 976, 986
BstDEI	CTNAG	2 cut(s)	570, 751
BstDSI	CCRYGG	1 cut(s)	1011
BstF5I	GGATG	5 cut(s)	43, 232, 281, 925, 943
BstFNI	CGCG	1 cut(s)	648
BstHHI	GCGC	1 cut(s)	650
BstKTI	GATC	7 cut(s)	142, 561, 878, 934, 1051, 1079, 1116
BstMAI	GTCTC	2 cut(s)	648, 1038
BstMBI	GATC	7 cut(s)	139, 558, 875, 931, 1048, 1076, 1113
BstNI	CCWGG	3 cut(s)	438, 518, 528
BstNSI	RCATGY	1 cut(s)	239
BstSCI	CCNGG	3 cut(s)	436, 516, 526
BstSFI	CTRYAG	1 cut(s)	969
BstUI	CGCG	1 cut(s)	648
BstV1I	GCAGC	1 cut(s)	588
BstV2I	GAAGAC	1 cut(s)	494
BstX2I	RGATCY	3 cut(s)	139, 558, 1048
BstYI	RGATCY	3 cut(s)	139, 558, 1048
Bsu15I	ATCGAT	1 cut(s)	1112
BsuI	GTATCC	3 cut(s)	385, 673, 1054
BsuRI	GGCC	1 cut(s)	412
BsuTUI	ATCGAT	1 cut(s)	1112
BtgI	CCRYGG	1 cut(s)	1011
BtsCI	GGATG	5 cut(s)	43, 232, 281, 925, 943
BtsI	GCAGTG	2 cut(s)	350, 985
BtsIMutI	CAGTG	4 cut(s)	80, 350, 746, 985
Cac8I	GCNNGC	3 cut(s)	476, 976, 986
CfoI	GCGC	1 cut(s)	650
Cfr13I	GGNCC	3 cut(s)	191, 410, 889
ClaI	ATCGAT	1 cut(s)	1112
Csp6I	GTAC	2 cut(s)	119, 1119
CviAII	CATG	6 cut(s)	25, 223, 236, 691, 818, 837
CviQI	GTAC	2 cut(s)	119, 1119
DdeI	CTNAG	2 cut(s)	570, 751
DpnI	GATC	7 cut(s)	141, 560, 877, 933, 1050, 1078, 1115
DpnII	GATC	7 cut(s)	139, 558, 875, 931, 1048, 1076, 1113
Eam1104I	CTCTTC	2 cut(s)	496, 717
EarI	CTCTTC	2 cut(s)	496, 717
Ecl136II	GAGCTC	1 cut(s)	748
Eco130I	CCWWGG	1 cut(s)	771
Eco24I	GRGCYC	2 cut(s)	750, 788
Eco47I	GGWCC	2 cut(s)	191, 889
Eco53kI	GAGCTC	1 cut(s)	748
Eco57I	CTGAAG	1 cut(s)	672
Eco88I	CYCGRG	1 cut(s)	1028
EcoICRI	GAGCTC	1 cut(s)	748
EcoO109I	RGGNCCY	1 cut(s)	410
EcoRII	CCWGG	3 cut(s)	436, 516, 526
EcoT14I	CCWWGG	1 cut(s)	771
EcoT22I	ATGCAT	1 cut(s)	763
EcoT38I	GRGCYC	2 cut(s)	750, 788
ErhI	CCWWGG	1 cut(s)	771
FaeI	CATG	6 cut(s)	28, 226, 239, 694, 821, 840
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FatI	CATG	6 cut(s)	24, 222, 235, 690, 817, 836
Fnu4HI	GCNGC	1 cut(s)	577
FokI	GGATG	5 cut(s)	50, 239, 268, 932, 950
FriOI	GRGCYC	2 cut(s)	750, 788
Fsp4HI	GCNGC	1 cut(s)	577
FspBI	CTAG	4 cut(s)	48, 402, 498, 533
GlaI	GCGC	1 cut(s)	649
GluI	GCNGC	1 cut(s)	577
GsaI	CCCAGC	1 cut(s)	262
GsuI	CTGGAG	3 cut(s)	254, 260, 722
HaeIII	GGCC	1 cut(s)	412
HapII	CCGG	2 cut(s)	666, 842
HhaI	GCGC	1 cut(s)	650
Hin1II	CATG	6 cut(s)	28, 226, 239, 694, 821, 840
Hin6I	GCGC	1 cut(s)	648
HinP1I	GCGC	1 cut(s)	648
HinfI	GANTC	3 cut(s)	809, 1019, 1031
HpaII	CCGG	2 cut(s)	666, 842
HphI	GGTGA	1 cut(s)	1055
Hpy166II	GTNNAC	1 cut(s)	487
Hpy188I	TCNGA	4 cut(s)	139, 217, 709, 1074
Hpy188III	TCNNGA	6 cut(s)	189, 666, 842, 935, 1093, 1150
Hpy8I	GTNNAC	1 cut(s)	487
HpyAV	CCTTC	3 cut(s)	586, 690, 866
HpyCH4III	ACNGT	3 cut(s)	118, 248, 970
HpyCH4IV	ACGT	1 cut(s)	1121
HpyCH4V	TGCA	4 cut(s)	78, 478, 761, 859
HpyF3I	CTNAG	2 cut(s)	570, 751
HpySE526I	ACGT	1 cut(s)	1121
Hsp92II	CATG	6 cut(s)	28, 226, 239, 694, 821, 840
HspAI	GCGC	1 cut(s)	648
Kpn2I	TCCGGA	2 cut(s)	665, 841
Kzo9I	GATC	7 cut(s)	139, 558, 875, 931, 1048, 1076, 1113
LmnI	GCTCC	4 cut(s)	279, 745, 826, 838
Lsp1109I	GCAGC	1 cut(s)	588
MaeI	CTAG	4 cut(s)	48, 402, 498, 533
MaeII	ACGT	1 cut(s)	1121
MaeIII	GTNAC	4 cut(s)	50, 204, 348, 861
MalI	GATC	7 cut(s)	141, 560, 877, 933, 1050, 1078, 1115
MboI	GATC	7 cut(s)	139, 558, 875, 931, 1048, 1076, 1113
MboII	GAAGA	8 cut(s)	483, 494, 568, 665, 734, 806, 809, 1058
MfeI	CAATTG	1 cut(s)	717
MflI	RGATCY	3 cut(s)	139, 558, 1048
MhlI	GDGCHC	2 cut(s)	750, 788
MluCI	AATT	8 cut(s)	61, 69, 611, 657, 717, 848, 853, 909
MlyI	GAGTC	2 cut(s)	1028, 1040
MnlI	CCTC	9 cut(s)	103, 211, 278, 326, 400, 505, 589, 662, 775
Mph1103I	ATGCAT	1 cut(s)	763
MroI	TCCGGA	2 cut(s)	665, 841
MseI	TTAA	3 cut(s)	545, 764, 1156
MslI	CAYNNNNRTG	2 cut(s)	344, 1041
MspI	CCGG	2 cut(s)	666, 842
MspR9I	CCNGG	3 cut(s)	438, 518, 528
MunI	CAATTG	1 cut(s)	717
Mva1269I	GAATGC	1 cut(s)	902
MvaI	CCWGG	3 cut(s)	438, 518, 528
MvnI	CGCG	1 cut(s)	648
NdeII	GATC	7 cut(s)	139, 558, 875, 931, 1048, 1076, 1113
NlaIII	CATG	6 cut(s)	28, 226, 239, 694, 821, 840
NlaIV	GGNNCC	2 cut(s)	411, 522
NmeAIII	GCCGAG	1 cut(s)	288
NmuCI	GTSAC	1 cut(s)	348
NsiI	ATGCAT	1 cut(s)	763
NspI	RCATGY	1 cut(s)	239
NspV	TTCGAA	2 cut(s)	906, 1136
PaeR7I	CTCGAG	1 cut(s)	1028
PcsI	WCGNNNNNNNCGW	1 cut(s)	1118
PctI	GAATGC	1 cut(s)	902
PfeI	GAWTC	1 cut(s)	809
PkrI	GCNGC	1 cut(s)	578
PleI	GAGTC	2 cut(s)	1027, 1039
PpsI	GAGTC	2 cut(s)	1027, 1039
Ppu21I	YACGTR	1 cut(s)	1122
PshBI	ATTAAT	1 cut(s)	764
Psp124BI	GAGCTC	1 cut(s)	750
Psp6I	CCWGG	3 cut(s)	436, 516, 526
PspFI	CCCAGC	1 cut(s)	258
PspGI	CCWGG	3 cut(s)	436, 516, 526
PspN4I	GGNNCC	2 cut(s)	411, 522
PspPI	GGNCC	3 cut(s)	191, 410, 889
PspXI	VCTCGAGB	1 cut(s)	1028
PsuI	RGATCY	3 cut(s)	139, 558, 1048
RsaI	GTAC	2 cut(s)	120, 1120
RsaNI	GTAC	2 cut(s)	119, 1119
RseI	CAYNNNNRTG	2 cut(s)	344, 1041
SacI	GAGCTC	1 cut(s)	750
SaqAI	TTAA	3 cut(s)	545, 764, 1156
SatI	GCNGC	1 cut(s)	577
Sau3AI	GATC	7 cut(s)	139, 558, 875, 931, 1048, 1076, 1113
Sau96I	GGNCC	3 cut(s)	191, 410, 889
ScaI	AGTACT	1 cut(s)	120
SchI	GAGTC	2 cut(s)	1028, 1040
ScrFI	CCNGG	3 cut(s)	438, 518, 528
SduI	GDGCHC	2 cut(s)	750, 788
SetI	ASST	8 cut(s)	222, 276, 318, 476, 522, 750, 773, 1124
SfcI	CTRYAG	1 cut(s)	969
Sfr274I	CTCGAG	1 cut(s)	1028
SfuI	TTCGAA	2 cut(s)	906, 1136
SinI	GGWCC	2 cut(s)	191, 889
SlaI	CTCGAG	1 cut(s)	1028
SmiMI	CAYNNNNRTG	2 cut(s)	344, 1041
SmlI	CTYRAG	1 cut(s)	1028
SmoI	CTYRAG	1 cut(s)	1028
SpeI	ACTAGT	2 cut(s)	47, 401
Sse9I	AATT	8 cut(s)	61, 69, 611, 657, 717, 848, 853, 909
SsiI	CCGC	2 cut(s)	239, 892
SspMI	CTAG	4 cut(s)	48, 402, 498, 533
SstI	GAGCTC	1 cut(s)	750
StyD4I	CCNGG	3 cut(s)	436, 516, 526
StyI	CCWWGG	1 cut(s)	771
TaaI	ACNGT	3 cut(s)	118, 248, 970
TaiI	ACGT	1 cut(s)	1124
TaqI	TCGA	5 cut(s)	906, 1029, 1112, 1136, 1149
TasI	AATT	8 cut(s)	61, 69, 611, 657, 717, 848, 853, 909
TatI	WGTACW	1 cut(s)	118
TfiI	GAWTC	1 cut(s)	809
Tru1I	TTAA	3 cut(s)	545, 764, 1156
Tru9I	TTAA	3 cut(s)	545, 764, 1156
TscAI	CASTG	4 cut(s)	80, 357, 746, 985
TseFI	GTSAC	1 cut(s)	348
TseI	GCWGC	1 cut(s)	576
Tsp45I	GTSAC	1 cut(s)	348
TspDTI	ATGAA	5 cut(s)	41, 494, 679, 954, 978
TspRI	CASTG	4 cut(s)	80, 357, 746, 985
VpaK11BI	GGWCC	2 cut(s)	191, 889
VspI	ATTAAT	1 cut(s)	764
XapI	RAATTY	3 cut(s)	61, 69, 853
XceI	RCATGY	1 cut(s)	239
XcmI	CCANNNNNNNNNTGG	2 cut(s)	524, 1009
XhoI	CTCGAG	1 cut(s)	1028
XspI	CTAG	4 cut(s)	48, 402, 498, 533
ZrmI	AGTACT	1 cut(s)	120
Zsp2I	ATGCAT	1 cut(s)	763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.