Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011483.1

Orthogroup ID

OG0006735

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2744

Gene Structure 2744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011483.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 799 bp

ctgtctgatcactcaagtcccccccgttcggcgacaagatcgctaccatgctcgacggccactctctcacggtaccttccggctgaacgcctcatctcgctcaacaactcggcggccccaatttacgccaacgggtcgttgatcatctcagcaccagcaggttcttcgaccgtagattttatggtcgccggagttggccggaggttggccagagtcccgccggagttggccagagacgatctcgccgaccctccctcctctcactctcacctcgatctctctctcaccaccgactccaacgccgcctcgtcttactgctcatctctggctccgccaacaaacctgatcgcaccaatccttcccctccacctcctcgaccacctccacctatgtggctaccgcaccgactcgctcaacctcagcagcgtcatccatgctctctgcgactccaactgcctcgaaaaagcccaccaccgctttgcccactccattgactcagattgcgtccttgaccagtgcacctgcaatgtcatcatcgctaggctccatgattcccaaaccccacacagcatgttgggtgttgttcgcgttttgagtacactgaagcctgattttgttgcctctttggttaattacaaccgtctgatggatcagctctgctcgctctgcggcccaatgaggctgataaagttcgccgggtttcagtcaccagtcttcggatttcagtcaccaataacaggattccggtcatcggtcgccgaagtccgcagccgggcattggtcactggagtctggcaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

266

Amino Acids

28.63

Weight (kDa)

7.28

Isoelectric Point (pI)

46.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18020
fragaria_vesca	FvH4_5g17250
malus_domestica	MD06G1231100.v1.1
prunus_persica	Prupe.5G232400_v2.0.a1
pyrus_communis	pycom06g20240
rosa_chinensis	RchiOBHm_Chr7g0178541
rosa_laevigata	RLG00000005439 RLG00000010173
rosa_multiflora	Rmu_sc0000775.1_g000015 Rmu_sc0000961.1_g000015 Rmu_sc0002421.1_g000004 Rmu_sc0003637.1_g000006 Rmu_sc0011483.1_g000001 Rmu_sc0016060.1_g000005 Rmu_ssc0000343.1_g000033
rosa_roxburghii	Rroxscaffold_3G00274830 Rroxscaffold_5G00333820
rosa_rugosa	Rorug06G0417900
rosa_samantha	Rh3CG367500 Rh4AG426400 Rh4DG434700 Rh7AG016400 Rh7BG015900 Rh7CG016600 Rh7DG016500
rosa_wichuraiana	Rw7G001300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	530
Acc36I	ACCTGC	2 cut(s)	149, 530
Acc65I	GGTACC	1 cut(s)	72
AccB1I	GGYRCC	1 cut(s)	72
AccII	CGCG	1 cut(s)	588
AciI	CCGC	8 cut(s)	113, 218, 303, 332, 400, 475, 669, 766
AclWI	GGATC	1 cut(s)	657
AcoI	YGGCCR	4 cut(s)	57, 196, 207, 228
AcuI	CTGAAG	1 cut(s)	623
AfaI	GTAC	2 cut(s)	74, 598
AfiI	CCNNNNNNNGG	8 cut(s)	28, 205, 646, 716, 737, 751, 772, 778
AleI	CACNNNNGTG	1 cut(s)	390
AluBI	AGCT	1 cut(s)	655
AluI	AGCT	1 cut(s)	655
Alw21I	GWGCWC	1 cut(s)	521
Alw26I	GTCTC	1 cut(s)	228
Alw44I	GTGCAC	1 cut(s)	517
AlwI	GGATC	1 cut(s)	657
AoxI	GGCC	6 cut(s)	57, 114, 196, 207, 228, 670
ApaLI	GTGCAC	1 cut(s)	517
ApeKI	GCWGC	2 cut(s)	423, 768
Asp718I	GGTACC	1 cut(s)	72
AspS9I	GGNCC	2 cut(s)	115, 671
AsuC2I	CCSGG	2 cut(s)	697, 773
AsuHPI	GGTGA	4 cut(s)	260, 277, 699, 720
BaeGI	GKGCMC	1 cut(s)	521
BalI	TGGCCA	2 cut(s)	209, 230
BanI	GGYRCC	1 cut(s)	72
BbsI	GAAGAC	1 cut(s)	706
Bbv12I	GWGCWC	1 cut(s)	521
BbvCI	CCTCAGC	1 cut(s)	419
BbvI	GCAGC	2 cut(s)	435, 780
BccI	CCATC	1 cut(s)	640
BceAI	ACGGC	1 cut(s)	72
BcgI	CGANNNNNNTGC	2 cut(s)	147, 181
BclI	TGATCA	2 cut(s)	7, 141
BcnI	CCSGG	2 cut(s)	697, 773
BcoDI	GTCTC	1 cut(s)	228
BfaI	CTAG	1 cut(s)	540
BfuAI	ACCTGC	2 cut(s)	149, 530
BisI	GCNGC	5 cut(s)	114, 303, 424, 670, 769
BlsI	GCNGC	5 cut(s)	115, 304, 425, 671, 770
Bme1390I	CCNGG	2 cut(s)	697, 773
BmgT120I	GGNCC	2 cut(s)	115, 671
BmiI	GGNNCC	4 cut(s)	74, 117, 330, 545
BmrFI	CCNGG	2 cut(s)	697, 773
BpiI	GAAGAC	1 cut(s)	706
BplI	GAGNNNNNCTC	2 cut(s)	225, 257
Bpu10I	CCTNAGC	1 cut(s)	419
BpuMI	CCSGG	2 cut(s)	697, 773
BsaWI	WCCGGW	1 cut(s)	744
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bsc4I	CCNNNNNNNGG	8 cut(s)	28, 205, 646, 716, 737, 751, 772, 778
Bse1I	ACTGG	3 cut(s)	514, 710, 790
Bse3DI	GCAATG	1 cut(s)	532
BseGI	GGATG	1 cut(s)	429
BseLI	CCNNNNNNNGG	8 cut(s)	28, 205, 646, 716, 737, 751, 772, 778
BseMI	GCAATG	1 cut(s)	532
BseMII	CTCAG	3 cut(s)	162, 433, 510
BseNI	ACTGG	3 cut(s)	514, 710, 790
BseRI	GAGGAG	2 cut(s)	247, 362
BseSI	GKGCMC	1 cut(s)	521
BseXI	GCAGC	2 cut(s)	435, 780
Bsh1236I	CGCG	1 cut(s)	588
Bsh1285I	CGRYCG	2 cut(s)	171, 756
BshFI	GGCC	6 cut(s)	59, 116, 198, 209, 230, 672
BshNI	GGYRCC	1 cut(s)	72
BsiEI	CGRYCG	2 cut(s)	171, 756
BsiHKAI	GWGCWC	1 cut(s)	521
BsiSI	CCGG	7 cut(s)	80, 189, 199, 221, 696, 745, 772
BslFI	GGGAC	2 cut(s)	3, 200
BslI	CCNNNNNNNGG	8 cut(s)	28, 205, 646, 716, 737, 751, 772, 778
BsmAI	GTCTC	1 cut(s)	228
BsmBI	CGTCTC	1 cut(s)	228
BsmFI	GGGAC	2 cut(s)	3, 200
BsnI	GGCC	6 cut(s)	59, 116, 198, 209, 230, 672
Bsp1286I	GDGCHC	1 cut(s)	521
Bsp143I	GATC	7 cut(s)	7, 38, 141, 238, 274, 345, 649
BspACI	CCGC	8 cut(s)	113, 218, 303, 332, 400, 475, 669, 766
BspANI	GGCC	6 cut(s)	59, 116, 198, 209, 230, 672
BspCNI	CTCAG	3 cut(s)	161, 432, 509
BspFNI	CGCG	1 cut(s)	588
BspLI	GGNNCC	4 cut(s)	74, 117, 330, 545
BspMI	ACCTGC	2 cut(s)	149, 530
BspPI	GGATC	1 cut(s)	657
BspT107I	GGYRCC	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	532
BsrI	ACTGG	3 cut(s)	514, 710, 790
BssMI	GATC	7 cut(s)	7, 38, 141, 238, 274, 345, 649
Bst4CI	ACNGT	3 cut(s)	72, 172, 641
BstC8I	GCNNGC	1 cut(s)	662
BstDEI	CTNAG	3 cut(s)	148, 419, 496
BstF5I	GGATG	1 cut(s)	429
BstFNI	CGCG	1 cut(s)	588
BstKTI	GATC	7 cut(s)	10, 41, 144, 241, 277, 348, 652
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	7 cut(s)	7, 38, 141, 238, 274, 345, 649
BstMCI	CGRYCG	2 cut(s)	171, 756
BstMWI	GCNNNNNNNGC	2 cut(s)	661, 666
BstNSI	RCATGY	1 cut(s)	574
BstSCI	CCNGG	2 cut(s)	695, 771
BstSLI	GKGCMC	1 cut(s)	521
BstUI	CGCG	1 cut(s)	588
BstV1I	GCAGC	2 cut(s)	435, 780
BstV2I	GAAGAC	1 cut(s)	706
BstXI	CCANNNNNNTGG	1 cut(s)	392
BsuRI	GGCC	6 cut(s)	59, 116, 198, 209, 230, 672
BtgZI	GCGATG	1 cut(s)	520
BtsCI	GGATG	1 cut(s)	429
BtsIMutI	CAGTG	3 cut(s)	521, 599, 783
BveI	ACCTGC	2 cut(s)	149, 530
Cac8I	GCNNGC	1 cut(s)	662
Cfr13I	GGNCC	2 cut(s)	115, 671
CseI	GACGC	2 cut(s)	415, 493
Csp6I	GTAC	2 cut(s)	73, 597
CviAII	CATG	4 cut(s)	48, 434, 548, 571
CviQI	GTAC	2 cut(s)	73, 597
DdeI	CTNAG	3 cut(s)	148, 419, 496
DpnI	GATC	7 cut(s)	9, 40, 143, 240, 276, 347, 651
DpnII	GATC	7 cut(s)	7, 38, 141, 238, 274, 345, 649
EaeI	YGGCCR	4 cut(s)	57, 196, 207, 228
EciI	GGCGGA	1 cut(s)	321
Eco57I	CTGAAG	1 cut(s)	623
Esp3I	CGTCTC	1 cut(s)	228
FaeI	CATG	4 cut(s)	51, 437, 551, 574
FaiI	YATR	6 cut(s)	49, 182, 391, 435, 549, 572
FaqI	GGGAC	2 cut(s)	3, 200
FatI	CATG	4 cut(s)	47, 433, 547, 570
FauI	CCCGC	1 cut(s)	225
FbaI	TGATCA	2 cut(s)	7, 141
Fnu4HI	GCNGC	5 cut(s)	114, 303, 424, 670, 769
FokI	GGATG	1 cut(s)	416
Fsp4HI	GCNGC	5 cut(s)	114, 303, 424, 670, 769
FspBI	CTAG	1 cut(s)	540
GluI	GCNGC	5 cut(s)	114, 303, 424, 670, 769
HaeIII	GGCC	6 cut(s)	59, 116, 198, 209, 230, 672
HapII	CCGG	7 cut(s)	80, 189, 199, 221, 696, 745, 772
HgaI	GACGC	2 cut(s)	415, 493
Hin1II	CATG	4 cut(s)	51, 437, 551, 574
HinfI	GANTC	8 cut(s)	213, 293, 407, 446, 494, 551, 741, 789
HpaII	CCGG	7 cut(s)	80, 189, 199, 221, 696, 745, 772
HphI	GGTGA	4 cut(s)	260, 277, 699, 720
Hpy166II	GTNNAC	2 cut(s)	519, 599
Hpy188I	TCNGA	4 cut(s)	7, 499, 645, 719
Hpy8I	GTNNAC	2 cut(s)	519, 599
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	2 cut(s)	86, 368
HpyCH4III	ACNGT	3 cut(s)	72, 172, 641
HpyCH4V	TGCA	2 cut(s)	519, 525
HpyF10VI	GCNNNNNNNGC	2 cut(s)	661, 666
HpyF3I	CTNAG	3 cut(s)	148, 419, 496
Hsp92II	CATG	4 cut(s)	51, 437, 551, 574
KpnI	GGTACC	1 cut(s)	76
Ksp22I	TGATCA	2 cut(s)	7, 141
Kzo9I	GATC	7 cut(s)	7, 38, 141, 238, 274, 345, 649
LmnI	GCTCC	2 cut(s)	334, 549
Lsp1109I	GCAGC	2 cut(s)	435, 780
MaeI	CTAG	1 cut(s)	540
MaeIII	GTNAC	3 cut(s)	705, 726, 781
MalI	GATC	7 cut(s)	9, 40, 143, 240, 276, 347, 651
MboI	GATC	7 cut(s)	7, 38, 141, 238, 274, 345, 649
MboII	GAAGA	2 cut(s)	156, 706
MhlI	GDGCHC	1 cut(s)	521
MlsI	TGGCCA	2 cut(s)	209, 230
MluCI	AATT	2 cut(s)	120, 631
MluNI	TGGCCA	2 cut(s)	209, 230
MlyI	GAGTC	6 cut(s)	222, 287, 401, 440, 488, 798
MmeI	TCCRAC	2 cut(s)	321, 474
Mox20I	TGGCCA	2 cut(s)	209, 230
MscI	TGGCCA	2 cut(s)	209, 230
MseI	TTAA	1 cut(s)	630
MslI	CAYNNNNRTG	1 cut(s)	390
Msp20I	TGGCCA	2 cut(s)	209, 230
MspI	CCGG	7 cut(s)	80, 189, 199, 221, 696, 745, 772
MspR9I	CCNGG	2 cut(s)	697, 773
MvnI	CGCG	1 cut(s)	588
MwoI	GCNNNNNNNGC	2 cut(s)	661, 666
NciI	CCSGG	2 cut(s)	697, 773
NdeII	GATC	7 cut(s)	7, 38, 141, 238, 274, 345, 649
NlaIII	CATG	4 cut(s)	51, 437, 551, 574
NlaIV	GGNNCC	4 cut(s)	74, 117, 330, 545
NmeAIII	GCCGAG	1 cut(s)	89
NmuCI	GTSAC	3 cut(s)	705, 726, 781
NspI	RCATGY	1 cut(s)	574
OliI	CACNNNNGTG	1 cut(s)	390
PaqCI	CACCTGC	1 cut(s)	530
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	551, 741
PkrI	GCNGC	5 cut(s)	115, 304, 425, 671, 770
PleI	GAGTC	6 cut(s)	221, 287, 401, 440, 488, 797
PpsI	GAGTC	6 cut(s)	221, 287, 401, 440, 488, 797
PspN4I	GGNNCC	4 cut(s)	74, 117, 330, 545
PspPI	GGNCC	2 cut(s)	115, 671
RsaI	GTAC	2 cut(s)	74, 598
RsaNI	GTAC	2 cut(s)	73, 597
RseI	CAYNNNNRTG	1 cut(s)	390
SaqAI	TTAA	1 cut(s)	630
SatI	GCNGC	5 cut(s)	114, 303, 424, 670, 769
Sau3AI	GATC	7 cut(s)	7, 38, 141, 238, 274, 345, 649
Sau96I	GGNCC	2 cut(s)	115, 671
SchI	GAGTC	6 cut(s)	222, 287, 401, 440, 488, 798
ScrFI	CCNGG	2 cut(s)	697, 773
SduI	GDGCHC	1 cut(s)	521
SmiMI	CAYNNNNRTG	1 cut(s)	390
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
Sse9I	AATT	2 cut(s)	120, 631
SsiI	CCGC	8 cut(s)	113, 218, 303, 332, 400, 475, 669, 766
SspMI	CTAG	1 cut(s)	540
StyD4I	CCNGG	2 cut(s)	695, 771
TaaI	ACNGT	3 cut(s)	72, 172, 641
TaqI	TCGA	5 cut(s)	53, 167, 273, 375, 459
TaqII	GACCGA	1 cut(s)	742
TasI	AATT	2 cut(s)	120, 631
TatI	WGTACW	1 cut(s)	596
TauI	GCSGC	3 cut(s)	116, 305, 672
TfiI	GAWTC	2 cut(s)	551, 741
Tru1I	TTAA	1 cut(s)	630
Tru9I	TTAA	1 cut(s)	630
TscAI	CASTG	3 cut(s)	521, 606, 790
TseFI	GTSAC	3 cut(s)	705, 726, 781
TseI	GCWGC	2 cut(s)	423, 768
Tsp45I	GTSAC	3 cut(s)	705, 726, 781
TspRI	CASTG	3 cut(s)	521, 606, 790
VneI	GTGCAC	1 cut(s)	517
XceI	RCATGY	1 cut(s)	574
XspI	CTAG	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.