Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000961.1

Orthogroup ID

OG0006735

Physical Location & Seq

Genomic Coordinates Forward (+)

62247 .. 62855

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000961.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ctgacagggacgatctcgccggcccaccctcttctcattcttacctcgatctctctctctcaccatcggttccgacaccgcctcttctcaccgctcgtctccggcttcgccgacaaacctgatcgcaccgatcctttgttttcttctcccactgctgatcaagtccttgcaatcttcttcttcttctgcacctgccaccactatgtcgaccaagccctccacctcctcaaccacctttgcctctgcgtctaccgcaccaacccgctcaacctcagcagtgttatccacgctctctgcgactccaactgcctcgaagaagcccaccaccgctttccccactctattgactcagatcgtgtccctgaccagcgcacctgcaacgtcatcatcgctaggctactcgattcccaaaccccacacagcacgttgggtgttattcgggttttgagtgcactgaagcctgattttgttgcctctttggttaattactactgtctgatggatcagctttgctcgctccgaggcccaatgaggctgatagagtgttgtttgatgaatggttattgcgaaattggcgagttgggtaatgcacagaaggtgtttgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

202

Amino Acids

22.7

Weight (kDa)

6.5

Isoelectric Point (pI)

33.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18020
fragaria_vesca	FvH4_5g17250
malus_domestica	MD06G1231100.v1.1
prunus_persica	Prupe.5G232400_v2.0.a1
pyrus_communis	pycom06g20240
rosa_chinensis	RchiOBHm_Chr7g0178541
rosa_laevigata	RLG00000005439 RLG00000010173
rosa_multiflora	Rmu_sc0000775.1_g000015 Rmu_sc0000961.1_g000015 Rmu_sc0002421.1_g000004 Rmu_sc0003637.1_g000006 Rmu_sc0011483.1_g000001 Rmu_sc0016060.1_g000005 Rmu_ssc0000343.1_g000033
rosa_roxburghii	Rroxscaffold_3G00274830 Rroxscaffold_5G00333820
rosa_rugosa	Rorug06G0417900
rosa_samantha	Rh3CG367500 Rh4AG426400 Rh4DG434700 Rh7AG016400 Rh7BG015900 Rh7CG016600 Rh7DG016500
rosa_wichuraiana	Rw7G001300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	200, 383
Acc36I	ACCTGC	2 cut(s)	200, 383
AccBSI	CCGCTC	2 cut(s)	94, 265
AccI	GTMKAC	2 cut(s)	207, 249
AciI	CCGC	5 cut(s)	79, 92, 253, 263, 328
AclWI	GGATC	2 cut(s)	125, 510
AcuI	CTGAAG	1 cut(s)	476
AluBI	AGCT	1 cut(s)	508
AluI	AGCT	1 cut(s)	508
Alw21I	GWGCWC	1 cut(s)	454
Alw26I	GTCTC	1 cut(s)	103
Alw44I	GTGCAC	1 cut(s)	450
AlwI	GGATC	2 cut(s)	125, 510
AoxI	GGCC	2 cut(s)	21, 523
ApaLI	GTGCAC	1 cut(s)	450
AspLEI	GCGC	1 cut(s)	372
AspS9I	GGNCC	2 cut(s)	22, 524
AsuHPI	GGTGA	2 cut(s)	53, 81
BaeGI	GKGCMC	1 cut(s)	454
Bbv12I	GWGCWC	1 cut(s)	454
BbvCI	CCTCAGC	1 cut(s)	272
BccI	CCATC	2 cut(s)	72, 493
BclI	TGATCA	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	103
BfaI	CTAG	1 cut(s)	393
BfuAI	ACCTGC	2 cut(s)	200, 383
BmgT120I	GGNCC	2 cut(s)	22, 524
BmiI	GGNNCC	1 cut(s)	71
Bpu10I	CCTNAGC	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	520
Bse118I	RCCGGY	1 cut(s)	19
BseDI	CCNNGG	1 cut(s)	520
BseMII	CTCAG	2 cut(s)	286, 363
BseRI	GAGGAG	1 cut(s)	215
BseSI	GKGCMC	1 cut(s)	454
BsgI	GTGCAG	1 cut(s)	172
BshFI	GGCC	2 cut(s)	23, 525
BsiHKAI	GWGCWC	1 cut(s)	454
BsiSI	CCGG	2 cut(s)	20, 102
BslFI	GGGAC	2 cut(s)	22, 344
BsmAI	GTCTC	1 cut(s)	103
BsmBI	CGTCTC	1 cut(s)	103
BsmFI	GGGAC	2 cut(s)	22, 344
BsnI	GGCC	2 cut(s)	23, 525
Bsp1286I	GDGCHC	1 cut(s)	454
Bsp143I	GATC	7 cut(s)	12, 48, 121, 130, 157, 352, 502
BspACI	CCGC	5 cut(s)	79, 92, 253, 263, 328
BspANI	GGCC	2 cut(s)	23, 525
BspCNI	CTCAG	2 cut(s)	285, 362
BspLI	GGNNCC	1 cut(s)	71
BspMI	ACCTGC	2 cut(s)	200, 383
BspPI	GGATC	2 cut(s)	125, 510
BsrBI	CCGCTC	2 cut(s)	94, 265
BsrFI	RCCGGY	1 cut(s)	19
BssAI	RCCGGY	1 cut(s)	19
BssECI	CCNNGG	1 cut(s)	520
BssMI	GATC	7 cut(s)	12, 48, 121, 130, 157, 352, 502
Bst4CI	ACNGT	1 cut(s)	494
Bst6I	CTCTTC	2 cut(s)	36, 89
BstC8I	GCNNGC	2 cut(s)	21, 515
BstDEI	CTNAG	2 cut(s)	272, 349
BstHHI	GCGC	1 cut(s)	372
BstKTI	GATC	7 cut(s)	15, 51, 124, 133, 160, 355, 505
BstMAI	GTCTC	1 cut(s)	103
BstMBI	GATC	7 cut(s)	12, 48, 121, 130, 157, 352, 502
BstMWI	GCNNNNNNNGC	3 cut(s)	252, 514, 573
BstSLI	GKGCMC	1 cut(s)	454
BsuRI	GGCC	2 cut(s)	23, 525
BtgZI	GCGATG	1 cut(s)	373
BtsI	GCAGTG	2 cut(s)	150, 283
BtsIMutI	CAGTG	3 cut(s)	150, 283, 452
BveI	ACCTGC	2 cut(s)	200, 383
Cac8I	GCNNGC	2 cut(s)	21, 515
CfoI	GCGC	1 cut(s)	372
Cfr10I	RCCGGY	1 cut(s)	19
Cfr13I	GGNCC	2 cut(s)	22, 524
CseI	GACGC	1 cut(s)	235
CviJI	RGCY	9 cut(s)	23, 105, 215, 320, 397, 460, 508, 525, 535
CviKI_1	RGCY	9 cut(s)	23, 105, 215, 320, 397, 460, 508, 525, 535
DdeI	CTNAG	2 cut(s)	272, 349
DpnI	GATC	7 cut(s)	14, 50, 123, 132, 159, 354, 504
DpnII	GATC	7 cut(s)	12, 48, 121, 130, 157, 352, 502
Eam1104I	CTCTTC	2 cut(s)	36, 89
EarI	CTCTTC	2 cut(s)	36, 89
Eco57I	CTGAAG	1 cut(s)	476
Esp3I	CGTCTC	1 cut(s)	103
FaiI	YATR	1 cut(s)	204
FaqI	GGGAC	2 cut(s)	22, 344
FauI	CCCGC	1 cut(s)	270
FbaI	TGATCA	1 cut(s)	157
FblI	GTMKAC	2 cut(s)	207, 249
FspBI	CTAG	1 cut(s)	393
GlaI	GCGC	1 cut(s)	371
HaeIII	GGCC	2 cut(s)	23, 525
HapII	CCGG	2 cut(s)	20, 102
HgaI	GACGC	1 cut(s)	235
HhaI	GCGC	1 cut(s)	372
Hin6I	GCGC	1 cut(s)	370
HinP1I	GCGC	1 cut(s)	370
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	3 cut(s)	299, 347, 404
HpaII	CCGG	2 cut(s)	20, 102
HphI	GGTGA	2 cut(s)	53, 81
Hpy166II	GTNNAC	3 cut(s)	208, 250, 452
Hpy188I	TCNGA	4 cut(s)	74, 352, 498, 521
Hpy8I	GTNNAC	3 cut(s)	208, 250, 452
HpyAV	CCTTC	1 cut(s)	589
HpyCH4III	ACNGT	1 cut(s)	494
HpyCH4IV	ACGT	2 cut(s)	381, 425
HpyCH4V	TGCA	5 cut(s)	170, 189, 378, 452, 590
HpyF10VI	GCNNNNNNNGC	3 cut(s)	252, 514, 573
HpyF3I	CTNAG	2 cut(s)	272, 349
HpySE526I	ACGT	2 cut(s)	381, 425
HspAI	GCGC	1 cut(s)	370
KroI	GCCGGC	1 cut(s)	19
KroNI	GCCGGC	1 cut(s)	21
Ksp22I	TGATCA	1 cut(s)	157
Kzo9I	GATC	7 cut(s)	12, 48, 121, 130, 157, 352, 502
LmnI	GCTCC	1 cut(s)	522
LpnPI	CCDG	8 cut(s)	33, 115, 132, 205, 375, 380, 388, 474
MaeI	CTAG	1 cut(s)	393
MaeII	ACGT	2 cut(s)	381, 425
MalI	GATC	7 cut(s)	14, 50, 123, 132, 159, 354, 504
MbiI	CCGCTC	2 cut(s)	94, 265
MboI	GATC	7 cut(s)	12, 48, 121, 130, 157, 352, 502
MboII	GAAGA	8 cut(s)	23, 76, 135, 166, 169, 172, 175, 326
MhlI	GDGCHC	1 cut(s)	454
MluCI	AATT	2 cut(s)	484, 570
MlyI	GAGTC	2 cut(s)	293, 341
MmeI	TCCRAC	2 cut(s)	97, 327
MroNI	GCCGGC	1 cut(s)	19
MseI	TTAA	2 cut(s)	483, 607
MslI	CAYNNNNRTG	1 cut(s)	201
MspI	CCGG	2 cut(s)	20, 102
MwoI	GCNNNNNNNGC	3 cut(s)	252, 514, 573
NaeI	GCCGGC	1 cut(s)	21
NdeII	GATC	7 cut(s)	12, 48, 121, 130, 157, 352, 502
NgoMIV	GCCGGC	1 cut(s)	19
NlaIV	GGNNCC	1 cut(s)	71
PaqCI	CACCTGC	2 cut(s)	200, 383
PcsI	WCGNNNNNNNCGW	1 cut(s)	294
PdiI	GCCGGC	1 cut(s)	21
PfeI	GAWTC	1 cut(s)	404
PleI	GAGTC	2 cut(s)	293, 341
PpsI	GAGTC	2 cut(s)	293, 341
PspN4I	GGNNCC	1 cut(s)	71
PspPI	GGNCC	2 cut(s)	22, 524
RseI	CAYNNNNRTG	1 cut(s)	201
SalI	GTCGAC	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	483, 607
Sau3AI	GATC	7 cut(s)	12, 48, 121, 130, 157, 352, 502
Sau96I	GGNCC	2 cut(s)	22, 524
SchI	GAGTC	2 cut(s)	293, 341
SduI	GDGCHC	1 cut(s)	454
SmiMI	CAYNNNNRTG	1 cut(s)	201
Sse9I	AATT	2 cut(s)	484, 570
SsiI	CCGC	5 cut(s)	79, 92, 253, 263, 328
SspMI	CTAG	1 cut(s)	393
TaaI	ACNGT	1 cut(s)	494
TaiI	ACGT	2 cut(s)	384, 428
TaqI	TCGA	4 cut(s)	47, 207, 312, 402
TasI	AATT	2 cut(s)	484, 570
TfiI	GAWTC	1 cut(s)	404
Tru1I	TTAA	2 cut(s)	483, 607
Tru9I	TTAA	2 cut(s)	483, 607
TscAI	CASTG	3 cut(s)	157, 283, 459
TspDTI	ATGAA	1 cut(s)	569
TspRI	CASTG	3 cut(s)	157, 283, 459
VneI	GTGCAC	1 cut(s)	450
XmiI	GTMKAC	2 cut(s)	207, 249
XspI	CTAG	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.