Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000775.1

Orthogroup ID

OG0006735

Physical Location & Seq

Genomic Coordinates Reverse (-)

70987 .. 72407

Gene Structure 1421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000775.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atgcgtaaataccagttacaggtcctcgcaatcttcttcttcttctacacctgccaccacaatgtcgaccaagccctccacctcctcgaccacctccgcctctgtggctaccacaccgaccttctaaaccacagcagcatcatccacgctcactgcgactccaactgcctcgaagaagcccaccaccgctttgcccactccattgactcagattgcgtccctgaccagcgcacctgcaacgtcatcatcgctaggctactcgattctcaaaccccacatagcacgttgggtgttcttcgtgttttgagtgcactgaagcctgattttgttgcctcattggttaattacaaccgtctgatggatcagctctgctcgctccgcggcccaattaggctgatagagtgttgtttgatgaatggttattgcaaaattggtgagttgggtaatgcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

150

Amino Acids

17.09

Weight (kDa)

6.61

Isoelectric Point (pI)

30.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18020
fragaria_vesca	FvH4_5g17250
malus_domestica	MD06G1231100.v1.1
prunus_persica	Prupe.5G232400_v2.0.a1
pyrus_communis	pycom06g20240
rosa_chinensis	RchiOBHm_Chr7g0178541
rosa_laevigata	RLG00000005439 RLG00000010173
rosa_multiflora	Rmu_sc0000775.1_g000015 Rmu_sc0000961.1_g000015 Rmu_sc0002421.1_g000004 Rmu_sc0003637.1_g000006 Rmu_sc0011483.1_g000001 Rmu_sc0016060.1_g000005 Rmu_ssc0000343.1_g000033
rosa_roxburghii	Rroxscaffold_3G00274830 Rroxscaffold_5G00333820
rosa_rugosa	Rorug06G0417900
rosa_samantha	Rh3CG367500 Rh4AG426400 Rh4DG434700 Rh7AG016400 Rh7BG015900 Rh7CG016600 Rh7DG016500
rosa_wichuraiana	Rw7G001300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	59, 242
Acc36I	ACCTGC	2 cut(s)	59, 242
AccI	GTMKAC	1 cut(s)	66
AccII	CGCG	1 cut(s)	381
AciI	CCGC	4 cut(s)	97, 187, 379, 381
AclWI	GGATC	1 cut(s)	369
AcuI	CTGAAG	1 cut(s)	335
AfiI	CCNNNNNNNGG	2 cut(s)	19, 358
AluBI	AGCT	1 cut(s)	367
AluI	AGCT	1 cut(s)	367
Alw21I	GWGCWC	1 cut(s)	313
Alw44I	GTGCAC	1 cut(s)	309
AlwI	GGATC	1 cut(s)	369
AoxI	GGCC	1 cut(s)	382
ApaLI	GTGCAC	1 cut(s)	309
ApeKI	GCWGC	1 cut(s)	135
AspLEI	GCGC	1 cut(s)	231
AspS9I	GGNCC	2 cut(s)	22, 383
AsuHPI	GGTGA	1 cut(s)	446
AvaII	GGWCC	1 cut(s)	22
BaeGI	GKGCMC	1 cut(s)	313
Bbv12I	GWGCWC	1 cut(s)	313
BbvI	GCAGC	1 cut(s)	147
BccI	CCATC	1 cut(s)	352
BfaI	CTAG	1 cut(s)	252
BfuAI	ACCTGC	2 cut(s)	59, 242
BglI	GCCNNNNNGGC	1 cut(s)	105
BisI	GCNGC	2 cut(s)	136, 382
BlsI	GCNGC	2 cut(s)	137, 383
Bme18I	GGWCC	1 cut(s)	22
BmgT120I	GGNCC	2 cut(s)	22, 383
BmsI	GCATC	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	379
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 358
Bse1I	ACTGG	1 cut(s)	13
BseDI	CCNNGG	1 cut(s)	379
BseGI	GGATG	1 cut(s)	141
BseLI	CCNNNNNNNGG	2 cut(s)	19, 358
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	13
BseRI	GAGGAG	1 cut(s)	74
BseSI	GKGCMC	1 cut(s)	313
BseXI	GCAGC	1 cut(s)	147
Bsh1236I	CGCG	1 cut(s)	381
BshFI	GGCC	1 cut(s)	384
BsiHKAI	GWGCWC	1 cut(s)	313
BslFI	GGGAC	1 cut(s)	203
BslI	CCNNNNNNNGG	2 cut(s)	19, 358
BsmFI	GGGAC	1 cut(s)	203
BsnI	GGCC	1 cut(s)	384
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp143I	GATC	1 cut(s)	361
BspACI	CCGC	4 cut(s)	97, 187, 379, 381
BspANI	GGCC	1 cut(s)	384
BspCNI	CTCAG	1 cut(s)	221
BspFNI	CGCG	1 cut(s)	381
BspMI	ACCTGC	2 cut(s)	59, 242
BspPI	GGATC	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	13
BssECI	CCNNGG	1 cut(s)	379
BssMI	GATC	1 cut(s)	361
Bst4CI	ACNGT	1 cut(s)	353
BstC8I	GCNNGC	1 cut(s)	374
BstDEI	CTNAG	1 cut(s)	208
BstDSI	CCRYGG	1 cut(s)	379
BstF5I	GGATG	1 cut(s)	141
BstFNI	CGCG	1 cut(s)	381
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	1 cut(s)	364
BstMBI	GATC	1 cut(s)	361
BstMWI	GCNNNNNNNGC	3 cut(s)	105, 373, 378
BstSLI	GKGCMC	1 cut(s)	313
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	1 cut(s)	147
BsuRI	GGCC	1 cut(s)	384
BtgI	CCRYGG	1 cut(s)	379
BtgZI	GCGATG	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	141
BtsI	GCAGTG	1 cut(s)	151
BtsIMutI	CAGTG	2 cut(s)	151, 311
BveI	ACCTGC	2 cut(s)	59, 242
Cac8I	GCNNGC	1 cut(s)	374
CfoI	GCGC	1 cut(s)	231
Cfr13I	GGNCC	2 cut(s)	22, 383
Cfr42I	CCGCGG	1 cut(s)	382
CseI	GACGC	1 cut(s)	205
CviJI	RGCY	8 cut(s)	74, 108, 179, 256, 319, 367, 384, 394
CviKI_1	RGCY	8 cut(s)	74, 108, 179, 256, 319, 367, 384, 394
DdeI	CTNAG	1 cut(s)	208
DpnI	GATC	1 cut(s)	363
DpnII	GATC	1 cut(s)	361
EciI	GGCGGA	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	22
Eco57I	CTGAAG	1 cut(s)	335
EcoO109I	RGGNCCY	1 cut(s)	22
EcoT22I	ATGCAT	1 cut(s)	451
FaiI	YATR	2 cut(s)	279, 451
FaqI	GGGAC	1 cut(s)	203
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	2 cut(s)	136, 382
FokI	GGATG	1 cut(s)	128
Fsp4HI	GCNGC	2 cut(s)	136, 382
FspBI	CTAG	1 cut(s)	252
GlaI	GCGC	1 cut(s)	230
GluI	GCNGC	2 cut(s)	136, 382
HaeIII	GGCC	1 cut(s)	384
HgaI	GACGC	1 cut(s)	205
HhaI	GCGC	1 cut(s)	231
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HinfI	GANTC	3 cut(s)	158, 206, 263
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	2 cut(s)	67, 311
Hpy188I	TCNGA	2 cut(s)	211, 357
Hpy8I	GTNNAC	2 cut(s)	67, 311
HpyAV	CCTTC	1 cut(s)	131
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4IV	ACGT	2 cut(s)	240, 284
HpyCH4V	TGCA	4 cut(s)	237, 311, 426, 449
HpyF10VI	GCNNNNNNNGC	3 cut(s)	105, 373, 378
HpyF3I	CTNAG	1 cut(s)	208
HpySE526I	ACGT	2 cut(s)	240, 284
HspAI	GCGC	1 cut(s)	229
KspI	CCGCGG	1 cut(s)	382
Kzo9I	GATC	1 cut(s)	361
LmnI	GCTCC	1 cut(s)	381
LpnPI	CCDG	7 cut(s)	5, 26, 64, 234, 239, 247, 333
Lsp1109I	GCAGC	1 cut(s)	147
LweI	GCATC	1 cut(s)	147
MaeI	CTAG	1 cut(s)	252
MaeII	ACGT	2 cut(s)	240, 284
MaeIII	GTNAC	1 cut(s)	15
MalI	GATC	1 cut(s)	363
MboI	GATC	1 cut(s)	361
MboII	GAAGA	6 cut(s)	25, 28, 31, 34, 185, 287
MhlI	GDGCHC	1 cut(s)	313
MluCI	AATT	3 cut(s)	343, 387, 429
MlyI	GAGTC	2 cut(s)	152, 200
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	8 cut(s)	35, 86, 92, 95, 104, 110, 179, 343
Mph1103I	ATGCAT	1 cut(s)	451
MseI	TTAA	1 cut(s)	342
MslI	CAYNNNNRTG	1 cut(s)	60
MspA1I	CMGCKG	1 cut(s)	381
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	3 cut(s)	105, 373, 378
NdeII	GATC	1 cut(s)	361
NsiI	ATGCAT	1 cut(s)	451
PaqCI	CACCTGC	2 cut(s)	59, 242
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	263
PkrI	GCNGC	2 cut(s)	137, 383
PleI	GAGTC	2 cut(s)	152, 200
PpsI	GAGTC	2 cut(s)	152, 200
PpuMI	RGGWCCY	1 cut(s)	22
Psp5II	RGGWCCY	1 cut(s)	22
PspPI	GGNCC	2 cut(s)	22, 383
PspPPI	RGGWCCY	1 cut(s)	22
RseI	CAYNNNNRTG	1 cut(s)	60
SacII	CCGCGG	1 cut(s)	382
SalI	GTCGAC	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	2 cut(s)	136, 382
Sau3AI	GATC	1 cut(s)	361
Sau96I	GGNCC	2 cut(s)	22, 383
SchI	GAGTC	2 cut(s)	152, 200
SduI	GDGCHC	1 cut(s)	313
SetI	ASST	9 cut(s)	24, 53, 84, 96, 123, 236, 243, 287, 369
SfaNI	GCATC	1 cut(s)	147
Sfr303I	CCGCGG	1 cut(s)	382
SgrBI	CCGCGG	1 cut(s)	382
SinI	GGWCC	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	60
Sse9I	AATT	3 cut(s)	343, 387, 429
SsiI	CCGC	4 cut(s)	97, 187, 379, 381
SspMI	CTAG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	353
TaiI	ACGT	2 cut(s)	243, 287
TaqI	TCGA	4 cut(s)	66, 87, 171, 261
TasI	AATT	3 cut(s)	343, 387, 429
TauI	GCSGC	1 cut(s)	384
TfiI	GAWTC	1 cut(s)	263
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	2 cut(s)	158, 318
TseI	GCWGC	1 cut(s)	135
TspDTI	ATGAA	1 cut(s)	428
TspRI	CASTG	2 cut(s)	158, 318
VneI	GTGCAC	1 cut(s)	309
VpaK11BI	GGWCC	1 cut(s)	22
XmiI	GTMKAC	1 cut(s)	66
XspI	CTAG	1 cut(s)	252
Zsp2I	ATGCAT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.