Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002421.1

Orthogroup ID

OG0006735

Physical Location & Seq

Genomic Coordinates Forward (+)

17269 .. 18050

Gene Structure 782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002421.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atgttcctcacaactctcccatccaccaaaaccccaatcacccccaaaaccctaaccatccctctcaccttcttcttcacacacaccacctcaccctctcaccacgaacaaccccaaaaccagctcgaccaaataagcatagacaacacaccatactggaccaaaaccatccacgacctctgcacccgccaccgcgatgtcgaccaagccctccacctcctcgaccacctccgcctccgtggctaccgccccaacccgctcaacctcagcagcatcatccacgccctctgcgactccaaccgcttcgaagaagcccaccatcgcttcgcccactccatcgactcagactgcgtccctgaccagcgcacctgcaacgtcatcatcgctcggctactcgattcggaaaccccgcacagcacgttgggtgttcttcgcgttttgagtccactgaagcctgattttgtagcctctttggttaattacaaccgtctgatggatcagctctgctcgctccggcggcccagtgaggctcatagagtgttgtttgacatgcttattagagggcattgccccaacgcggtttctttcactacattgattaacgggtactgcggcgttggcgagttgggtaatgcacacaaggtgtttgatgaaatgtcgggatattgggggtgctatggaattgatgggaagattgtgggagacaatgaagggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

238

Amino Acids

26.9

Weight (kDa)

6.41

Isoelectric Point (pI)

29.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18020
fragaria_vesca	FvH4_5g17250
malus_domestica	MD06G1231100.v1.1
prunus_persica	Prupe.5G232400_v2.0.a1
pyrus_communis	pycom06g20240
rosa_chinensis	RchiOBHm_Chr7g0178541
rosa_laevigata	RLG00000005439 RLG00000010173
rosa_multiflora	Rmu_sc0000775.1_g000015 Rmu_sc0000961.1_g000015 Rmu_sc0002421.1_g000004 Rmu_sc0003637.1_g000006 Rmu_sc0011483.1_g000001 Rmu_sc0016060.1_g000005 Rmu_ssc0000343.1_g000033
rosa_roxburghii	Rroxscaffold_3G00274830 Rroxscaffold_5G00333820
rosa_rugosa	Rorug06G0417900
rosa_samantha	Rh3CG367500 Rh4AG426400 Rh4DG434700 Rh7AG016400 Rh7BG015900 Rh7CG016600 Rh7DG016500
rosa_wichuraiana	Rw7G001300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	377
Acc36I	ACCTGC	1 cut(s)	377
AccBSI	CCGCTC	1 cut(s)	259
AccI	GTMKAC	1 cut(s)	201
AccII	CGCG	3 cut(s)	195, 435, 578
AclWI	GGATC	1 cut(s)	504
AcuI	CTGAAG	1 cut(s)	470
AdeI	CACNNNGTG	1 cut(s)	643
AfaI	GTAC	1 cut(s)	608
AfiI	CCNNNNNNNGG	2 cut(s)	493, 577
AluBI	AGCT	2 cut(s)	124, 502
AluI	AGCT	2 cut(s)	124, 502
Alw26I	GTCTC	1 cut(s)	696
AlwI	GGATC	1 cut(s)	504
AoxI	GGCC	1 cut(s)	518
ApeKI	GCWGC	1 cut(s)	270
AspLEI	GCGC	1 cut(s)	366
AspS9I	GGNCC	2 cut(s)	159, 519
AsuHPI	GGTGA	4 cut(s)	31, 58, 84, 92
AsuII	TTCGAA	1 cut(s)	306
AvaII	GGWCC	1 cut(s)	159
BbvCI	CCTCAGC	1 cut(s)	266
BbvI	GCAGC	1 cut(s)	282
BccI	CCATC	7 cut(s)	28, 65, 176, 327, 344, 487, 680
BcoDI	GTCTC	1 cut(s)	696
BfuAI	ACCTGC	1 cut(s)	377
BglI	GCCNNNNNGGC	1 cut(s)	240
BisI	GCNGC	3 cut(s)	271, 518, 613
BlsI	GCNGC	3 cut(s)	272, 519, 614
Bme18I	GGWCC	1 cut(s)	159
BmgT120I	GGNCC	2 cut(s)	159, 519
BmrI	ACTGGG	1 cut(s)	516
BmsI	GCATC	1 cut(s)	282
BmuI	ACTGGG	1 cut(s)	516
Bpu10I	CCTNAGC	1 cut(s)	266
Bpu14I	TTCGAA	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	2 cut(s)	493, 577
Bse1I	ACTGG	2 cut(s)	161, 522
Bse3DI	GCAATG	1 cut(s)	565
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	4 cut(s)	20, 57, 168, 276
BseLI	CCNNNNNNNGG	2 cut(s)	493, 577
BseMI	GCAATG	1 cut(s)	565
BseMII	CTCAG	2 cut(s)	280, 357
BseNI	ACTGG	2 cut(s)	161, 522
BseRI	GAGGAG	1 cut(s)	209
BseXI	GCAGC	1 cut(s)	282
BsgI	GTGCAG	1 cut(s)	166
Bsh1236I	CGCG	3 cut(s)	195, 435, 578
BshFI	GGCC	1 cut(s)	520
BsiSI	CCGG	1 cut(s)	514
BslFI	GGGAC	1 cut(s)	338
BslI	CCNNNNNNNGG	2 cut(s)	493, 577
BsmAI	GTCTC	1 cut(s)	696
BsmFI	GGGAC	1 cut(s)	338
BsnI	GGCC	1 cut(s)	520
Bsp119I	TTCGAA	1 cut(s)	306
Bsp143I	GATC	1 cut(s)	496
BspANI	GGCC	1 cut(s)	520
BspCNI	CTCAG	2 cut(s)	279, 356
BspFNI	CGCG	3 cut(s)	195, 435, 578
BspMI	ACCTGC	1 cut(s)	377
BspPI	GGATC	1 cut(s)	504
BspT104I	TTCGAA	1 cut(s)	306
BsrBI	CCGCTC	1 cut(s)	259
BsrDI	GCAATG	1 cut(s)	565
BsrI	ACTGG	2 cut(s)	161, 522
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	1 cut(s)	496
Bst4CI	ACNGT	1 cut(s)	488
BstBI	TTCGAA	1 cut(s)	306
BstC8I	GCNNGC	1 cut(s)	509
BstDEI	CTNAG	2 cut(s)	266, 343
BstDSI	CCRYGG	1 cut(s)	238
BstF5I	GGATG	4 cut(s)	20, 57, 168, 276
BstFNI	CGCG	3 cut(s)	195, 435, 578
BstHHI	GCGC	1 cut(s)	366
BstKTI	GATC	1 cut(s)	499
BstMAI	GTCTC	1 cut(s)	696
BstMBI	GATC	1 cut(s)	496
BstMWI	GCNNNNNNNGC	4 cut(s)	240, 508, 517, 618
BstNSI	RCATGY	1 cut(s)	553
BstUI	CGCG	3 cut(s)	195, 435, 578
BstV1I	GCAGC	1 cut(s)	282
BsuRI	GGCC	1 cut(s)	520
BtgI	CCRYGG	1 cut(s)	238
BtgZI	GCGATG	3 cut(s)	210, 305, 367
BtsCI	GGATG	4 cut(s)	20, 57, 168, 276
BtsIMutI	CAGTG	2 cut(s)	446, 529
BveI	ACCTGC	1 cut(s)	377
Cac8I	GCNNGC	1 cut(s)	509
CfoI	GCGC	1 cut(s)	366
Cfr13I	GGNCC	2 cut(s)	159, 519
CseI	GACGC	1 cut(s)	340
Csp6I	GTAC	1 cut(s)	607
CviAII	CATG	1 cut(s)	550
CviQI	GTAC	1 cut(s)	607
DdeI	CTNAG	2 cut(s)	266, 343
DpnI	GATC	1 cut(s)	498
DpnII	GATC	1 cut(s)	496
DraIII	CACNNNGTG	1 cut(s)	643
EciI	GGCGGA	1 cut(s)	221
Eco47I	GGWCC	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	470
FaeI	CATG	1 cut(s)	553
FaiI	YATR	5 cut(s)	140, 154, 534, 551, 678
FaqI	GGGAC	1 cut(s)	338
FatI	CATG	1 cut(s)	549
FauI	CCCGC	3 cut(s)	194, 264, 417
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	3 cut(s)	271, 518, 613
FokI	GGATG	4 cut(s)	7, 44, 155, 263
Fsp4HI	GCNGC	3 cut(s)	271, 518, 613
GlaI	GCGC	1 cut(s)	365
GluI	GCNGC	3 cut(s)	271, 518, 613
HaeIII	GGCC	1 cut(s)	520
HapII	CCGG	1 cut(s)	514
HgaI	GACGC	1 cut(s)	340
HhaI	GCGC	1 cut(s)	366
Hin1II	CATG	1 cut(s)	553
Hin6I	GCGC	1 cut(s)	364
HinP1I	GCGC	1 cut(s)	364
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	4 cut(s)	293, 341, 398, 442
HpaII	CCGG	1 cut(s)	514
HphI	GGTGA	4 cut(s)	31, 58, 84, 92
Hpy166II	GTNNAC	2 cut(s)	202, 446
Hpy188I	TCNGA	3 cut(s)	346, 403, 492
Hpy188III	TCNNGA	1 cut(s)	660
Hpy8I	GTNNAC	2 cut(s)	202, 446
HpyAV	CCTTC	2 cut(s)	79, 704
HpyCH4III	ACNGT	1 cut(s)	488
HpyCH4IV	ACGT	2 cut(s)	375, 419
HpyCH4V	TGCA	3 cut(s)	183, 372, 635
HpyF10VI	GCNNNNNNNGC	4 cut(s)	240, 508, 517, 618
HpyF3I	CTNAG	2 cut(s)	266, 343
HpySE526I	ACGT	2 cut(s)	375, 419
Hsp92II	CATG	1 cut(s)	553
HspAI	GCGC	1 cut(s)	364
Kzo9I	GATC	1 cut(s)	496
LmnI	GCTCC	1 cut(s)	516
LpnPI	CCDG	8 cut(s)	134, 142, 369, 374, 382, 468, 527, 535
Lsp1109I	GCAGC	1 cut(s)	282
LweI	GCATC	1 cut(s)	282
MaeII	ACGT	2 cut(s)	375, 419
MalI	GATC	1 cut(s)	498
MbiI	CCGCTC	1 cut(s)	259
MboI	GATC	1 cut(s)	496
MboII	GAAGA	5 cut(s)	64, 67, 320, 422, 703
MluCI	AATT	2 cut(s)	478, 681
MlyI	GAGTC	3 cut(s)	287, 335, 451
MmeI	TCCRAC	1 cut(s)	321
MseI	TTAA	2 cut(s)	477, 600
MslI	CAYNNNNRTG	1 cut(s)	195
MspI	CCGG	1 cut(s)	514
MvnI	CGCG	3 cut(s)	195, 435, 578
MwoI	GCNNNNNNNGC	4 cut(s)	240, 508, 517, 618
NdeII	GATC	1 cut(s)	496
NlaIII	CATG	1 cut(s)	553
NmeAIII	GCCGAG	1 cut(s)	367
NspI	RCATGY	1 cut(s)	553
NspV	TTCGAA	1 cut(s)	306
PaqCI	CACCTGC	1 cut(s)	377
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	398
PflFI	GACNNNGTC	1 cut(s)	350
PkrI	GCNGC	3 cut(s)	272, 519, 614
PleI	GAGTC	3 cut(s)	287, 335, 450
PpsI	GAGTC	3 cut(s)	287, 335, 450
PspPI	GGNCC	2 cut(s)	159, 519
PsyI	GACNNNGTC	1 cut(s)	350
RsaI	GTAC	1 cut(s)	608
RsaNI	GTAC	1 cut(s)	607
RseI	CAYNNNNRTG	1 cut(s)	195
SalI	GTCGAC	1 cut(s)	200
SaqAI	TTAA	2 cut(s)	477, 600
SatI	GCNGC	3 cut(s)	271, 518, 613
Sau3AI	GATC	1 cut(s)	496
Sau96I	GGNCC	2 cut(s)	159, 519
SchI	GAGTC	3 cut(s)	287, 335, 451
SfaNI	GCATC	1 cut(s)	282
SfuI	TTCGAA	1 cut(s)	306
SinI	GGWCC	1 cut(s)	159
SmiMI	CAYNNNNRTG	1 cut(s)	195
Sse9I	AATT	2 cut(s)	478, 681
TaaI	ACNGT	1 cut(s)	488
TaiI	ACGT	2 cut(s)	378, 422
TaqI	TCGA	6 cut(s)	126, 201, 222, 306, 339, 396
TasI	AATT	2 cut(s)	478, 681
TauI	GCSGC	2 cut(s)	520, 615
TfiI	GAWTC	1 cut(s)	398
Tru1I	TTAA	2 cut(s)	477, 600
Tru9I	TTAA	2 cut(s)	477, 600
TscAI	CASTG	2 cut(s)	453, 529
TseI	GCWGC	1 cut(s)	270
TspDTI	ATGAA	1 cut(s)	666
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	2 cut(s)	453, 529
Tth111I	GACNNNGTC	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	159
XceI	RCATGY	1 cut(s)	553
XmiI	GTMKAC	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.