Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0006735

Physical Location & Seq

Genomic Coordinates Forward (+)

1094115 .. 1096187

Gene Structure 2073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG016400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1929 bp

ATGTTCCTCACAACTCTCCCATCCACCAAAACCCCAATCACCCCCAAAACCCTAACCATCCCTCTCACCTTCTTCTTCACACACACCACCTCACCCTCTCACCACGAACAACCCCAAAACCAGCTCGACCAAATAAGCATAGACAACACACCATACTGGACCAAAACCATCCACGACCTCTGCACCCGCCACCGCGATGTCGACCAAGCCCTCCACCTCCTCGACCACCTCCGCCTCCGTGGCTACCGCCCCAACCCGCTCAACCTCAGCAGCGTCATCCACGCCCTCTGCGACTCCAACCGCTTCGAAGAAGCCCACCATCGCTTCGCCCACTCCATCGACTCAGACTGCGTCCCTGACCAGCGCACCTGCAACGTCATCATCGCTCGGCTACTGGATTCGGAAACCCCGCACCGCACGTTGGGTGTTCTTCGCGTTTTGAGTCCACTGAAGCCTGATTTTGTAGCCTCTTTGGTTAATTACAACCGTCTGATGGATCAGCTCTGCTCGCTCCGGCGGCCCAGTGAGGCTCATAGAGTGTTGTTTGACATGCTTATTAGAGGGCATTGCCCCAACGCGCGGGATATTGGGGGTGCTATGGAATTGATGGGAAGATTGTGGGAGACAATGAAGGGTGAAGAGGACACACTTGTGAAAAATGCGGCATTCTCGAATTTGATTGATTCTATGTGTAGAGAAGGGTATTTTCAAGAGGTTTTCGGTATTGCAGAAGATAGGCCACAGGGGGAGAGTGTGAATGAGGAGTTTGCTTATGGACAGATGATAGATTCGCTTTGTCTAGCCGGAAGGCATCATGGGGCGTCGAGAATTGTGTACATCATGAGGCATAGAGGGTTTGTTCCACGCATAACGTCGTATAATTGTATCATACATGGACTGAGCAAGGAGGGGGAGGGAGGTTGTATGAGAGCTTATCAGTTGTTGGAGGAAGGGATTGAGTTTGGTTACTTGCCGTCTGAGTACACTTACAAGGTTCTGGTGGAAGGTCTTTGCCAAGAGTCCGACATTGACAAGGCGCGGCAGGTTCTTCAATATATGTTAAAGAAGGAAAGAGTGGACAAAACCAGGATGTATAATATATATTTGAGAGCTCTATGTCGTGTTAATAACACGACTGAGCTTTTGAATGTGCTTGTTTCGATGCTCCAGACCGAGTGTCAGCCTGATGTGATCACCCTAAACATAGTTGTCAACGGGTTCTGCAAGATGGGGAGAGTGGAAGAAGCTTTAAAGGTACTGGATGATATGATGACTGGAAAATTTTGTGCGCCGAATGTAGTGACCTTCACAACTATCATTAATGGTTTGTTACATGTTGGTAGAACGCAAGAAGCTCTTGGTATGTTGCGTGATGTAATGCCTCAGAAAGGTTTTCGCCCTAATGTTGTGACATATAATGCAATTCTTCGTGGTTTGTTTAAACTTAATCAAGGAAGGGAAGCAATGGAGATTTTCAATGGCATGGTAACTGAGGGTGTGGCTGCTGATAGTACCACTTACACAATTATAATTGATGGGTTATGTGAGTCTGATCAGCTAGAAGAGGCTAAGAGGTTCTGGGATGAGGTTATTTGGCCCTCACAGATCCATGACAATTTTGTATACGCAGCCATCATCAAAGGGATTTGCCATTCAGGAAATTTTGATGAGGCATGTCATTTCCTTTACGAACTTGTAGACTCTGGGGTCTGTCCGAATATATTCAGTTACAACATTGTGATCGACACTGCTTACAAACTAGGTCTGAAGAAAGAGGCATATGAAGTTGTAAGAGAGATGAGAAGAAATGGGCTGGCTCCGGATTCTGTAACTTGGAGGATTCTTGACAAGTTACACAGCAACTCAAGAAAACAATATGGAGATGATGAGGCTTCAACTTTGCAATTCGGAAGTGGACCGCATGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

642

Amino Acids

72.96

Weight (kDa)

6.01

Isoelectric Point (pI)

35.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	288 - 339	5e-07	PPR repeat family
PPR_1	PF12854	322 - 353	3.4e-06	PPR repeat
TPR_24	PF23276	326 - 420	8.7e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	364 - 409	1e-08	PPR repeat family
PPR_1	PF12854	392 - 423	6e-13	PPR repeat
PPR_2	PF13041	395 - 444	7.2e-14	PPR repeat family
PPR	PF01535	398 - 424	3.4e-06	PPR repeat
PPR_2	PF13041	431 - 481	1.4e-12	PPR repeat family
PPR_3	PF13812	459 - 512	6.5e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	463 - 496	4.3e-06	PPR repeat
PPR_2	PF13041	467 - 515	1.1e-16	PPR repeat family
PPR_1	PF12854	499 - 529	2e-06	PPR repeat
PPR_2	PF13041	538 - 583	2e-08	PPR repeat family
PPR_2	PF13041	572 - 615	1.5e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0006735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18020
fragaria_vesca	FvH4_5g17250
malus_domestica	MD06G1231100.v1.1
prunus_persica	Prupe.5G232400_v2.0.a1
pyrus_communis	pycom06g20240
rosa_chinensis	RchiOBHm_Chr7g0178541
rosa_laevigata	RLG00000005439 RLG00000010173
rosa_multiflora	Rmu_sc0000775.1_g000015 Rmu_sc0000961.1_g000015 Rmu_sc0002421.1_g000004 Rmu_sc0003637.1_g000006 Rmu_sc0011483.1_g000001 Rmu_sc0016060.1_g000005 Rmu_ssc0000343.1_g000033
rosa_roxburghii	Rroxscaffold_3G00274830 Rroxscaffold_5G00333820
rosa_rugosa	Rorug06G0417900
rosa_samantha	Rh3CG367500 Rh4AG426400 Rh4DG434700 Rh7AG016400 Rh7BG015900 Rh7CG016600 Rh7DG016500
rosa_wichuraiana	Rw7G001300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1529
AarI	CACCTGC	1 cut(s)	377
AasI	GACNNNNNNGTC	1 cut(s)	1706
Acc36I	ACCTGC	2 cut(s)	377, 1033
AccBSI	CCGCTC	1 cut(s)	259
AccI	GTMKAC	3 cut(s)	201, 1623, 1698
AccII	CGCG	5 cut(s)	195, 435, 578, 580, 1039
AccIII	TCCGGA	1 cut(s)	1819
AclWI	GGATC	2 cut(s)	504, 1600
AcsI	RAATTY	3 cut(s)	673, 1280, 1660
AcuI	CTGAAG	2 cut(s)	470, 1787
AcyI	GRCGYC	1 cut(s)	821
AfaI	GTAC	4 cut(s)	836, 983, 1257, 1513
AfiI	CCNNNNNNNGG	4 cut(s)	421, 493, 579, 1388
AflIII	ACRYGT	1 cut(s)	1333
AgsI	TTSAA	5 cut(s)	710, 1052, 1147, 1477, 1896
AhdI	GACNNNNNGTC	1 cut(s)	1176
AjnI	CCWGG	1 cut(s)	1085
AleI	CACNNNNGTG	1 cut(s)	650
AluBI	AGCT	8 cut(s)	124, 502, 932, 1112, 1141, 1247, 1355, 1558
AluI	AGCT	8 cut(s)	124, 502, 932, 1112, 1141, 1247, 1355, 1558
Alw21I	GWGCWC	1 cut(s)	1114
Alw26I	GTCTC	1 cut(s)	617
AlwI	GGATC	2 cut(s)	504, 1600
Aor13HI	TCCGGA	1 cut(s)	1819
AoxI	GGCC	3 cut(s)	518, 737, 1595
ApeKI	GCWGC	3 cut(s)	270, 1502, 1628
ApoI	RAATTY	3 cut(s)	673, 1280, 1660
ArsI	GACNNNNNNTTYG	2 cut(s)	1126, 1158
AseI	ATTAAT	1 cut(s)	1320
Asp700I	GAANNNNTTC	1 cut(s)	1721
AspLEI	GCGC	4 cut(s)	366, 580, 1039, 1291
AspS9I	GGNCC	4 cut(s)	159, 519, 1596, 1916
AsuHPI	GGTGA	6 cut(s)	31, 58, 84, 92, 647, 1186
AsuII	TTCGAA	1 cut(s)	306
AvaII	GGWCC	2 cut(s)	159, 1916
BanII	GRGCYC	1 cut(s)	1114
Bbv12I	GWGCWC	1 cut(s)	1114
BbvCI	CCTCAGC	1 cut(s)	266
BbvI	GCAGC	3 cut(s)	282, 1489, 1640
BceAI	ACGGC	1 cut(s)	958
BciT130I	CCWGG	1 cut(s)	1087
BclI	TGATCA	2 cut(s)	1191, 1552
BcoDI	GTCTC	1 cut(s)	617
BfaI	CTAG	3 cut(s)	800, 1559, 1760
BfuAI	ACCTGC	2 cut(s)	377, 1033
BglI	GCCNNNNNGGC	1 cut(s)	240
BisI	GCNGC	6 cut(s)	271, 518, 663, 1040, 1503, 1629
BlsI	GCNGC	6 cut(s)	272, 519, 664, 1041, 1504, 1630
Bme1390I	CCNGG	1 cut(s)	1087
Bme18I	GGWCC	2 cut(s)	159, 1916
BmeRI	GACNNNNNGTC	1 cut(s)	1176
BmgT120I	GGNCC	4 cut(s)	159, 519, 1596, 1916
BmiI	GGNNCC	1 cut(s)	1818
BmrFI	CCNGG	1 cut(s)	1087
BmrI	ACTGGG	1 cut(s)	516
BmsI	GCATC	2 cut(s)	820, 1152
BmuI	ACTGGG	1 cut(s)	516
BpmI	CTGGAG	1 cut(s)	1151
Bpu10I	CCTNAGC	1 cut(s)	266
Bpu14I	TTCGAA	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	1849
BsaHI	GRCGYC	1 cut(s)	821
BsaJI	CCNNGG	1 cut(s)	238
BsaWI	WCCGGW	1 cut(s)	1819
Bsc4I	CCNNNNNNNGG	4 cut(s)	421, 493, 579, 1388
Bse1I	ACTGG	5 cut(s)	161, 399, 522, 1263, 1279
Bse3DI	GCAATG	2 cut(s)	565, 1470
BseAI	TCCGGA	1 cut(s)	1819
BseBI	CCWGG	1 cut(s)	1087
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	7 cut(s)	20, 57, 168, 276, 1095, 1267, 1588
BseLI	CCNNNNNNNGG	4 cut(s)	421, 493, 579, 1388
BseMI	GCAATG	2 cut(s)	565, 1470
BseMII	CTCAG	7 cut(s)	280, 357, 890, 969, 1128, 1397, 1482
BseNI	ACTGG	5 cut(s)	161, 399, 522, 1263, 1279
BseRI	GAGGAG	2 cut(s)	209, 776
BseXI	GCAGC	3 cut(s)	282, 1489, 1640
BsgI	GTGCAG	1 cut(s)	166
Bsh1236I	CGCG	5 cut(s)	195, 435, 578, 580, 1039
BshFI	GGCC	3 cut(s)	520, 739, 1597
BsiHKAI	GWGCWC	1 cut(s)	1114
BsiSI	CCGG	3 cut(s)	514, 804, 1820
BslFI	GGGAC	1 cut(s)	338
BslI	CCNNNNNNNGG	4 cut(s)	421, 493, 579, 1388
BsmAI	GTCTC	1 cut(s)	617
BsmFI	GGGAC	1 cut(s)	338
BsmI	GAATGC	1 cut(s)	665
BsnI	GGCC	3 cut(s)	520, 739, 1597
Bsp119I	TTCGAA	1 cut(s)	306
Bsp1286I	GDGCHC	1 cut(s)	1114
Bsp13I	TCCGGA	1 cut(s)	1819
Bsp1407I	TGTACA	1 cut(s)	834
Bsp143I	GATC	5 cut(s)	496, 1191, 1552, 1605, 1740
BspANI	GGCC	3 cut(s)	520, 739, 1597
BspCNI	CTCAG	7 cut(s)	279, 356, 891, 970, 1129, 1396, 1483
BspEI	TCCGGA	1 cut(s)	1819
BspFNI	CGCG	5 cut(s)	195, 435, 578, 580, 1039
BspHI	TCATGA	1 cut(s)	840
BspLI	GGNNCC	1 cut(s)	1818
BspMI	ACCTGC	2 cut(s)	377, 1033
BspPI	GGATC	2 cut(s)	504, 1600
BspT104I	TTCGAA	1 cut(s)	306
BsrBI	CCGCTC	1 cut(s)	259
BsrDI	GCAATG	2 cut(s)	565, 1470
BsrGI	TGTACA	1 cut(s)	834
BsrI	ACTGG	5 cut(s)	161, 399, 522, 1263, 1279
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	5 cut(s)	496, 1191, 1552, 1605, 1740
BssNAI	GTATAC	1 cut(s)	1624
BssNI	GRCGYC	1 cut(s)	821
Bst1107I	GTATAC	1 cut(s)	1624
Bst2UI	CCWGG	1 cut(s)	1087
Bst4CI	ACNGT	1 cut(s)	488
Bst6I	CTCTTC	2 cut(s)	633, 1557
BstACI	GRCGYC	1 cut(s)	821
BstAUI	TGTACA	1 cut(s)	834
BstBI	TTCGAA	1 cut(s)	306
BstC8I	GCNNGC	2 cut(s)	509, 1815
BstDEI	CTNAG	8 cut(s)	266, 343, 899, 978, 1137, 1383, 1491, 1569
BstDSI	CCRYGG	1 cut(s)	238
BstENI	CCTNNNNNAGG	1 cut(s)	1386
BstF5I	GGATG	7 cut(s)	20, 57, 168, 276, 1095, 1267, 1588
BstFNI	CGCG	5 cut(s)	195, 435, 578, 580, 1039
BstHHI	GCGC	4 cut(s)	366, 580, 1039, 1291
BstKTI	GATC	5 cut(s)	499, 1194, 1555, 1608, 1743
BstMAI	GTCTC	1 cut(s)	617
BstMBI	GATC	5 cut(s)	496, 1191, 1552, 1605, 1740
BstMWI	GCNNNNNNNGC	3 cut(s)	240, 508, 517
BstNI	CCWGG	1 cut(s)	1087
BstNSI	RCATGY	3 cut(s)	553, 1337, 1677
BstSCI	CCNGG	1 cut(s)	1085
BstUI	CGCG	5 cut(s)	195, 435, 578, 580, 1039
BstV1I	GCAGC	3 cut(s)	282, 1489, 1640
BstX2I	RGATCY	1 cut(s)	1605
BstYI	RGATCY	1 cut(s)	1605
BstZ17I	GTATAC	1 cut(s)	1624
BsuRI	GGCC	3 cut(s)	520, 739, 1597
BtgI	CCRYGG	1 cut(s)	238
BtgZI	GCGATG	3 cut(s)	210, 305, 367
BtsCI	GGATG	7 cut(s)	20, 57, 168, 276, 1095, 1267, 1588
BtsI	GCAGTG	1 cut(s)	1746
BtsIMutI	CAGTG	3 cut(s)	446, 529, 1746
BveI	ACCTGC	2 cut(s)	377, 1033
Cac8I	GCNNGC	2 cut(s)	509, 1815
CciI	TCATGA	1 cut(s)	840
CfoI	GCGC	4 cut(s)	366, 580, 1039, 1291
Cfr13I	GGNCC	4 cut(s)	159, 519, 1596, 1916
CseI	GACGC	3 cut(s)	262, 340, 810
Csp6I	GTAC	4 cut(s)	835, 982, 1256, 1512
CviAII	CATG	9 cut(s)	550, 815, 841, 893, 1334, 1483, 1610, 1674, 1922
CviQI	GTAC	4 cut(s)	835, 982, 1256, 1512
DdeI	CTNAG	8 cut(s)	266, 343, 899, 978, 1137, 1383, 1491, 1569
DpnI	GATC	5 cut(s)	498, 1193, 1554, 1607, 1742
DpnII	GATC	5 cut(s)	496, 1191, 1552, 1605, 1740
DraI	TTTAAA	2 cut(s)	1251, 1441
DrdI	GACNNNNNNGTC	1 cut(s)	1706
DriI	GACNNNNNGTC	1 cut(s)	1176
DseDI	GACNNNNNNGTC	1 cut(s)	1706
Eam1104I	CTCTTC	2 cut(s)	633, 1557
Eam1105I	GACNNNNNGTC	1 cut(s)	1176
EarI	CTCTTC	2 cut(s)	633, 1557
EciI	GGCGGA	1 cut(s)	221
Ecl136II	GAGCTC	1 cut(s)	1112
Eco24I	GRGCYC	1 cut(s)	1114
Eco47I	GGWCC	2 cut(s)	159, 1916
Eco53kI	GAGCTC	1 cut(s)	1112
Eco57I	CTGAAG	2 cut(s)	470, 1787
EcoICRI	GAGCTC	1 cut(s)	1112
EcoNI	CCTNNNNNAGG	1 cut(s)	1386
EcoRII	CCWGG	1 cut(s)	1085
EcoT38I	GRGCYC	1 cut(s)	1114
FaeI	CATG	9 cut(s)	553, 818, 844, 896, 1337, 1486, 1613, 1677, 1925
FalI	AAGNNNNNCTT	2 cut(s)	1341, 1373
FaqI	GGGAC	1 cut(s)	338
FatI	CATG	9 cut(s)	549, 814, 840, 892, 1333, 1482, 1609, 1673, 1921
FauI	CCCGC	4 cut(s)	194, 264, 417, 573
FauNDI	CATATG	1 cut(s)	1780
FbaI	TGATCA	2 cut(s)	1191, 1552
FblI	GTMKAC	3 cut(s)	201, 1623, 1698
Fnu4HI	GCNGC	6 cut(s)	271, 518, 663, 1040, 1503, 1629
FokI	GGATG	7 cut(s)	7, 44, 155, 263, 1102, 1274, 1595
FriOI	GRGCYC	1 cut(s)	1114
Fsp4HI	GCNGC	6 cut(s)	271, 518, 663, 1040, 1503, 1629
FspBI	CTAG	3 cut(s)	800, 1559, 1760
GlaI	GCGC	4 cut(s)	365, 579, 1038, 1290
GluI	GCNGC	6 cut(s)	271, 518, 663, 1040, 1503, 1629
GsuI	CTGGAG	1 cut(s)	1151
HaeIII	GGCC	3 cut(s)	520, 739, 1597
HapII	CCGG	3 cut(s)	514, 804, 1820
HgaI	GACGC	3 cut(s)	262, 340, 810
HhaI	GCGC	4 cut(s)	366, 580, 1039, 1291
Hin1I	GRCGYC	1 cut(s)	821
Hin1II	CATG	9 cut(s)	553, 818, 844, 896, 1337, 1486, 1613, 1677, 1925
Hin6I	GCGC	4 cut(s)	364, 578, 1037, 1289
HinP1I	GCGC	4 cut(s)	364, 578, 1037, 1289
HincII	GTYRAC	2 cut(s)	202, 1213
HindII	GTYRAC	2 cut(s)	202, 1213
HindIII	AAGCTT	1 cut(s)	1245
HpaII	CCGG	3 cut(s)	514, 804, 1820
HphI	GGTGA	6 cut(s)	31, 58, 84, 92, 647, 1186
Hpy166II	GTNNAC	9 cut(s)	202, 446, 835, 984, 1078, 1213, 1624, 1699, 1916
Hpy188III	TCNNGA	9 cut(s)	670, 710, 825, 841, 1168, 1656, 1820, 1844, 1866
Hpy8I	GTNNAC	9 cut(s)	202, 446, 835, 984, 1078, 1213, 1624, 1699, 1916
Hpy99I	CGWCG	2 cut(s)	826, 877
HpyAV	CCTTC	9 cut(s)	79, 625, 692, 801, 944, 998, 1060, 1315, 1449
HpyCH4III	ACNGT	1 cut(s)	488
HpyCH4IV	ACGT	3 cut(s)	375, 419, 872
HpyCH4V	TGCA	6 cut(s)	183, 372, 728, 1224, 1421, 1903
HpyF10VI	GCNNNNNNNGC	3 cut(s)	240, 508, 517
HpyF3I	CTNAG	8 cut(s)	266, 343, 899, 978, 1137, 1383, 1491, 1569
HpySE526I	ACGT	3 cut(s)	375, 419, 872
Hsp92I	GRCGYC	1 cut(s)	821
Hsp92II	CATG	9 cut(s)	553, 818, 844, 896, 1337, 1486, 1613, 1677, 1925
HspAI	GCGC	4 cut(s)	364, 578, 1037, 1289
Kpn2I	TCCGGA	1 cut(s)	1819
Ksp22I	TGATCA	2 cut(s)	1191, 1552
Kzo9I	GATC	5 cut(s)	496, 1191, 1552, 1605, 1740
LmnI	GCTCC	3 cut(s)	516, 1170, 1822
Lsp1109I	GCAGC	3 cut(s)	282, 1489, 1640
LweI	GCATC	2 cut(s)	820, 1152
MaeI	CTAG	3 cut(s)	800, 1559, 1760
MaeII	ACGT	3 cut(s)	375, 419, 872
MaeIII	GTNAC	8 cut(s)	965, 1300, 1329, 1408, 1486, 1727, 1828, 1851
MalI	GATC	5 cut(s)	498, 1193, 1554, 1607, 1742
MbiI	CCGCTC	1 cut(s)	259
MboI	GATC	5 cut(s)	496, 1191, 1552, 1605, 1740
MflI	RGATCY	1 cut(s)	1605
MhlI	GDGCHC	1 cut(s)	1114
MlyI	GAGTC	6 cut(s)	287, 335, 451, 1028, 1556, 1694
MmeI	TCCRAC	3 cut(s)	321, 924, 1047
MroI	TCCGGA	1 cut(s)	1819
MroXI	GAANNNNTTC	1 cut(s)	1721
MseI	TTAA	7 cut(s)	477, 1061, 1125, 1250, 1320, 1440, 1446
MslI	CAYNNNNRTG	2 cut(s)	195, 650
MspI	CCGG	3 cut(s)	514, 804, 1820
MspR9I	CCNGG	1 cut(s)	1087
MssI	GTTTAAAC	1 cut(s)	1441
Mva1269I	GAATGC	1 cut(s)	665
MvaI	CCWGG	1 cut(s)	1087
MvnI	CGCG	5 cut(s)	195, 435, 578, 580, 1039
MwoI	GCNNNNNNNGC	3 cut(s)	240, 508, 517
NdeI	CATATG	1 cut(s)	1780
NdeII	GATC	5 cut(s)	496, 1191, 1552, 1605, 1740
NlaIII	CATG	9 cut(s)	553, 818, 844, 896, 1337, 1486, 1613, 1677, 1925
NlaIV	GGNNCC	1 cut(s)	1818
NmeAIII	GCCGAG	1 cut(s)	367
NmuCI	GTSAC	2 cut(s)	1300, 1408
NspI	RCATGY	3 cut(s)	553, 1337, 1677
NspV	TTCGAA	1 cut(s)	306
OliI	CACNNNNGTG	1 cut(s)	650
PagI	TCATGA	1 cut(s)	840
PaqCI	CACCTGC	1 cut(s)	377
PciI	ACATGT	1 cut(s)	1333
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PctI	GAATGC	1 cut(s)	665
PdmI	GAANNNNTTC	1 cut(s)	1721
PfeI	GAWTC	5 cut(s)	398, 683, 788, 1823, 1840
PflFI	GACNNNGTC	1 cut(s)	350
PkrI	GCNGC	6 cut(s)	272, 519, 664, 1041, 1504, 1630
PleI	GAGTC	6 cut(s)	287, 335, 450, 1027, 1555, 1694
PmeI	GTTTAAAC	1 cut(s)	1441
PpsI	GAGTC	6 cut(s)	287, 335, 450, 1027, 1555, 1694
PscI	ACATGT	1 cut(s)	1333
PshBI	ATTAAT	1 cut(s)	1320
PsiI	TTATAA	1 cut(s)	1529
Psp124BI	GAGCTC	1 cut(s)	1114
Psp6I	CCWGG	1 cut(s)	1085
PspGI	CCWGG	1 cut(s)	1085
PspN4I	GGNNCC	1 cut(s)	1818
PspPI	GGNCC	4 cut(s)	159, 519, 1596, 1916
PsuI	RGATCY	1 cut(s)	1605
PsyI	GACNNNGTC	1 cut(s)	350
RsaI	GTAC	4 cut(s)	836, 983, 1257, 1513
RsaNI	GTAC	4 cut(s)	835, 982, 1256, 1512
RseI	CAYNNNNRTG	2 cut(s)	195, 650
SacI	GAGCTC	1 cut(s)	1114
SalI	GTCGAC	1 cut(s)	200
SaqAI	TTAA	7 cut(s)	477, 1061, 1125, 1250, 1320, 1440, 1446
SatI	GCNGC	6 cut(s)	271, 518, 663, 1040, 1503, 1629
Sau3AI	GATC	5 cut(s)	496, 1191, 1552, 1605, 1740
Sau96I	GGNCC	4 cut(s)	159, 519, 1596, 1916
SchI	GAGTC	6 cut(s)	287, 335, 451, 1028, 1556, 1694
ScrFI	CCNGG	1 cut(s)	1087
SduI	GDGCHC	1 cut(s)	1114
SfaNI	GCATC	2 cut(s)	820, 1152
SfuI	TTCGAA	1 cut(s)	306
SinI	GGWCC	2 cut(s)	159, 1916
SmiMI	CAYNNNNRTG	2 cut(s)	195, 650
SmlI	CTYRAG	1 cut(s)	1864
SmoI	CTYRAG	1 cut(s)	1864
SspMI	CTAG	3 cut(s)	800, 1559, 1760
SstI	GAGCTC	1 cut(s)	1114
StyD4I	CCNGG	1 cut(s)	1085
TaaI	ACNGT	1 cut(s)	488
TaiI	ACGT	3 cut(s)	378, 422, 875
TaqI	TCGA	9 cut(s)	126, 201, 222, 306, 339, 671, 824, 1160, 1743
TaqII	GACCGA	1 cut(s)	1187
TatI	WGTACW	2 cut(s)	834, 981
TauI	GCSGC	3 cut(s)	520, 665, 1042
TfiI	GAWTC	5 cut(s)	398, 683, 788, 1823, 1840
Tru1I	TTAA	7 cut(s)	477, 1061, 1125, 1250, 1320, 1440, 1446
Tru9I	TTAA	7 cut(s)	477, 1061, 1125, 1250, 1320, 1440, 1446
TscAI	CASTG	3 cut(s)	453, 529, 1753
TseFI	GTSAC	2 cut(s)	1300, 1408
TseI	GCWGC	3 cut(s)	270, 1502, 1628
Tsp45I	GTSAC	2 cut(s)	1300, 1408
TspDTI	ATGAA	2 cut(s)	644, 1797
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	3 cut(s)	453, 529, 1753
Tth111I	GACNNNGTC	1 cut(s)	350
VpaK11BI	GGWCC	2 cut(s)	159, 1916
VspI	ATTAAT	1 cut(s)	1320
XagI	CCTNNNNNAGG	1 cut(s)	1386
XapI	RAATTY	3 cut(s)	673, 1280, 1660
XceI	RCATGY	3 cut(s)	553, 1337, 1677
XmiI	GTMKAC	3 cut(s)	201, 1623, 1698
XmnI	GAANNNNTTC	1 cut(s)	1721
XspI	CTAG	3 cut(s)	800, 1559, 1760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.