Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0006735

Physical Location & Seq

Genomic Coordinates Reverse (-)

63824202 .. 63831733

Gene Structure 7532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG434700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAAGCCCTCAGTTCGGCAAACAGCGGCACAGTCGCTATACCTAAAGCAAGTTCCAATGAACGTGCTGCCCAGAGACTCATCAGTCGCAACCTTAGCAACCATTGCATTTGGCCCCGTCCCTGCATGTAACACATATTGCGTCCCTGACCAGCGCACCTGCAACGTCATCATCGATTCCCAAACCCCACACAGCATGTTGGGTGTTCTTCGGGTTTTGAGTGCACTGAAGCCTGATTTTGTTGCCTCTTTGGTTAATTACAACCGTCTGATAGATCAGCTCTGCTCGCTCCGTGGCCCAATGAGGCTGATAGAGTGTTGTTTGATGAATGGTTACTGCGAAATTGGCGAGTTGGGTAATGCACAGAAGGTGTTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

126

Amino Acids

13.82

Weight (kDa)

8.19

Isoelectric Point (pI)

38.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18020
fragaria_vesca	FvH4_5g17250
malus_domestica	MD06G1231100.v1.1
prunus_persica	Prupe.5G232400_v2.0.a1
pyrus_communis	pycom06g20240
rosa_chinensis	RchiOBHm_Chr7g0178541
rosa_laevigata	RLG00000005439 RLG00000010173
rosa_multiflora	Rmu_sc0000775.1_g000015 Rmu_sc0000961.1_g000015 Rmu_sc0002421.1_g000004 Rmu_sc0003637.1_g000006 Rmu_sc0011483.1_g000001 Rmu_sc0016060.1_g000005 Rmu_ssc0000343.1_g000033
rosa_roxburghii	Rroxscaffold_3G00274830 Rroxscaffold_5G00333820
rosa_rugosa	Rorug06G0417900
rosa_samantha	Rh3CG367500 Rh4AG426400 Rh4DG434700 Rh7AG016400 Rh7BG015900 Rh7CG016600 Rh7DG016500
rosa_wichuraiana	Rw7G001300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	167
AasI	GACNNNNNNGTC	1 cut(s)	83
Acc36I	ACCTGC	1 cut(s)	167
AciI	CCGC	1 cut(s)	26
AcuI	CTGAAG	1 cut(s)	248
AfiI	CCNNNNNNNGG	1 cut(s)	15
AluBI	AGCT	1 cut(s)	280
AluI	AGCT	1 cut(s)	280
Alw21I	GWGCWC	1 cut(s)	226
Alw26I	GTCTC	1 cut(s)	69
Alw44I	GTGCAC	1 cut(s)	222
AoxI	GGCC	2 cut(s)	112, 295
ApaLI	GTGCAC	1 cut(s)	222
ApeKI	GCWGC	1 cut(s)	67
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	2 cut(s)	113, 296
BaeGI	GKGCMC	1 cut(s)	226
Bbv12I	GWGCWC	1 cut(s)	226
BbvI	GCAGC	1 cut(s)	54
BcoDI	GTCTC	1 cut(s)	69
BfuAI	ACCTGC	1 cut(s)	167
BisI	GCNGC	2 cut(s)	27, 68
BlsI	GCNGC	2 cut(s)	28, 69
BmgT120I	GGNCC	2 cut(s)	113, 296
BmiI	GGNNCC	1 cut(s)	115
Bpu10I	CCTNAGC	1 cut(s)	94
Bsa29I	ATCGAT	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	292
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
Bse3DI	GCAATG	1 cut(s)	102
BseCI	ATCGAT	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	292
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	24
BseSI	GKGCMC	1 cut(s)	226
BseXI	GCAGC	1 cut(s)	54
BshFI	GGCC	2 cut(s)	114, 297
BshVI	ATCGAT	1 cut(s)	174
BsiHKAI	GWGCWC	1 cut(s)	226
BslFI	GGGAC	2 cut(s)	104, 128
BslI	CCNNNNNNNGG	1 cut(s)	15
BsmAI	GTCTC	1 cut(s)	69
BsmFI	GGGAC	2 cut(s)	104, 128
BsnI	GGCC	2 cut(s)	114, 297
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp143I	GATC	1 cut(s)	274
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	2 cut(s)	114, 297
BspCNI	CTCAG	1 cut(s)	23
BspDI	ATCGAT	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	115
BspMI	ACCTGC	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	292
BssMI	GATC	1 cut(s)	274
Bst4CI	ACNGT	2 cut(s)	33, 266
BstAPI	GCANNNNNTGC	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	287
BstDEI	CTNAG	2 cut(s)	10, 94
BstDSI	CCRYGG	1 cut(s)	292
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	1 cut(s)	277
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	1 cut(s)	274
BstMWI	GCNNNNNNNGC	4 cut(s)	95, 104, 286, 345
BstNSI	RCATGY	2 cut(s)	129, 199
BstSLI	GKGCMC	1 cut(s)	226
BstV1I	GCAGC	1 cut(s)	54
Bsu15I	ATCGAT	1 cut(s)	174
BsuRI	GGCC	2 cut(s)	114, 297
BsuTUI	ATCGAT	1 cut(s)	174
BtgI	CCRYGG	1 cut(s)	292
BtsIMutI	CAGTG	1 cut(s)	224
BveI	ACCTGC	1 cut(s)	167
Cac8I	GCNNGC	1 cut(s)	287
CfoI	GCGC	1 cut(s)	156
Cfr13I	GGNCC	2 cut(s)	113, 296
ClaI	ATCGAT	1 cut(s)	174
CseI	GACGC	1 cut(s)	130
CviAII	CATG	2 cut(s)	126, 196
CviJI	RGCY	6 cut(s)	7, 114, 232, 280, 297, 307
CviKI_1	RGCY	6 cut(s)	7, 114, 232, 280, 297, 307
DdeI	CTNAG	2 cut(s)	10, 94
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
DrdI	GACNNNNNNGTC	1 cut(s)	83
DseDI	GACNNNNNNGTC	1 cut(s)	83
Eco57I	CTGAAG	1 cut(s)	248
FaeI	CATG	2 cut(s)	129, 199
FaiI	YATR	4 cut(s)	40, 127, 136, 197
FaqI	GGGAC	2 cut(s)	104, 128
FatI	CATG	2 cut(s)	125, 195
Fnu4HI	GCNGC	2 cut(s)	27, 68
Fsp4HI	GCNGC	2 cut(s)	27, 68
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	2 cut(s)	27, 68
HaeIII	GGCC	2 cut(s)	114, 297
HgaI	GACGC	1 cut(s)	130
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	2 cut(s)	129, 199
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HinfI	GANTC	2 cut(s)	77, 176
Hpy166II	GTNNAC	1 cut(s)	224
Hpy188I	TCNGA	1 cut(s)	270
Hpy8I	GTNNAC	1 cut(s)	224
HpyAV	CCTTC	1 cut(s)	361
HpyCH4III	ACNGT	2 cut(s)	33, 266
HpyCH4IV	ACGT	2 cut(s)	63, 165
HpyCH4V	TGCA	5 cut(s)	107, 125, 162, 224, 362
HpyF10VI	GCNNNNNNNGC	4 cut(s)	95, 104, 286, 345
HpyF3I	CTNAG	2 cut(s)	10, 94
HpySE526I	ACGT	2 cut(s)	63, 165
Hsp92II	CATG	2 cut(s)	129, 199
HspAI	GCGC	1 cut(s)	154
Kzo9I	GATC	1 cut(s)	274
LmnI	GCTCC	1 cut(s)	294
LpnPI	CCDG	6 cut(s)	85, 135, 159, 164, 172, 246
Lsp1109I	GCAGC	1 cut(s)	54
MaeII	ACGT	2 cut(s)	63, 165
MaeIII	GTNAC	2 cut(s)	128, 332
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MboII	GAAGA	1 cut(s)	200
MhlI	GDGCHC	1 cut(s)	226
MluCI	AATT	2 cut(s)	256, 342
MlyI	GAGTC	1 cut(s)	71
MnlI	CCTC	3 cut(s)	19, 256, 297
MseI	TTAA	2 cut(s)	255, 379
MspA1I	CMGCKG	1 cut(s)	26
MwoI	GCNNNNNNNGC	4 cut(s)	95, 104, 286, 345
NdeII	GATC	1 cut(s)	274
NlaIII	CATG	2 cut(s)	129, 199
NlaIV	GGNNCC	1 cut(s)	115
NspI	RCATGY	2 cut(s)	129, 199
PaqCI	CACCTGC	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	176
PkrI	GCNGC	2 cut(s)	28, 69
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
PspN4I	GGNNCC	1 cut(s)	115
PspPI	GGNCC	2 cut(s)	113, 296
SaqAI	TTAA	2 cut(s)	255, 379
SatI	GCNGC	2 cut(s)	27, 68
Sau3AI	GATC	1 cut(s)	274
Sau96I	GGNCC	2 cut(s)	113, 296
SchI	GAGTC	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	226
SetI	ASST	7 cut(s)	45, 66, 95, 161, 168, 282, 372
Sse9I	AATT	2 cut(s)	256, 342
SsiI	CCGC	1 cut(s)	26
TaaI	ACNGT	2 cut(s)	33, 266
TaiI	ACGT	2 cut(s)	66, 168
TaqI	TCGA	1 cut(s)	174
TasI	AATT	2 cut(s)	256, 342
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	176
Tru1I	TTAA	2 cut(s)	255, 379
Tru9I	TTAA	2 cut(s)	255, 379
TscAI	CASTG	1 cut(s)	231
TseI	GCWGC	1 cut(s)	67
TspDTI	ATGAA	3 cut(s)	17, 74, 341
TspGWI	ACGGA	1 cut(s)	281
TspRI	CASTG	1 cut(s)	231
VneI	GTGCAC	1 cut(s)	222
XceI	RCATGY	2 cut(s)	129, 199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.