Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0006735

Physical Location & Seq

Genomic Coordinates Reverse (-)

72281480 .. 72288035

Gene Structure 6556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG426400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTCCATTTACAAGGTCCTTGCAATCTTCTTATTCTTCCGCACCTGCCACCACTATGTCGACCAAGCCCTCCACCTCCTCGACCACCTTCGCCTCTGTGGCTACCGCACCAACCCGCTCAACCTCAGCAGTGTCATCCACGCTCTCTGCGACTCCAACTGCCTCGAAGAAGCCCACCACCGCTTTTCCCACTCCATTGACTCAGATTGCGTCCCTGACCAGCGCACCTGCAACGTCATCATCGATTCCCAAACCCCACACAGCATGTTGGGTGTTCTTCGGGTTTTGAGTGCACTGAAGCCTGATTTTGTTGCCTCTTTGGTTAATTACAACCGTCTGATAGATCAGCTCTGCTCGCTCCGTGGCCCAATGAGGCTGATAGAGTGTTGTTTGATGAATGGTTACTGCGAAATTGGCGAGTTGGGTAATGCACAGAAGGTGTTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

149

Amino Acids

16.92

Weight (kDa)

6.28

Isoelectric Point (pI)

31.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18020
fragaria_vesca	FvH4_5g17250
malus_domestica	MD06G1231100.v1.1
prunus_persica	Prupe.5G232400_v2.0.a1
pyrus_communis	pycom06g20240
rosa_chinensis	RchiOBHm_Chr7g0178541
rosa_laevigata	RLG00000005439 RLG00000010173
rosa_multiflora	Rmu_sc0000775.1_g000015 Rmu_sc0000961.1_g000015 Rmu_sc0002421.1_g000004 Rmu_sc0003637.1_g000006 Rmu_sc0011483.1_g000001 Rmu_sc0016060.1_g000005 Rmu_ssc0000343.1_g000033
rosa_roxburghii	Rroxscaffold_3G00274830 Rroxscaffold_5G00333820
rosa_rugosa	Rorug06G0417900
rosa_samantha	Rh3CG367500 Rh4AG426400 Rh4DG434700 Rh7AG016400 Rh7BG015900 Rh7CG016600 Rh7DG016500
rosa_wichuraiana	Rw7G001300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	53, 236
Acc36I	ACCTGC	2 cut(s)	53, 236
AccBSI	CCGCTC	1 cut(s)	118
AccI	GTMKAC	1 cut(s)	60
AciI	CCGC	4 cut(s)	40, 106, 116, 181
AcuI	CTGAAG	1 cut(s)	317
AluBI	AGCT	1 cut(s)	349
AluI	AGCT	1 cut(s)	349
Alw21I	GWGCWC	1 cut(s)	295
Alw44I	GTGCAC	1 cut(s)	291
AoxI	GGCC	1 cut(s)	364
ApaLI	GTGCAC	1 cut(s)	291
AspLEI	GCGC	1 cut(s)	225
AspS9I	GGNCC	2 cut(s)	16, 365
AvaII	GGWCC	1 cut(s)	16
BaeGI	GKGCMC	1 cut(s)	295
Bbv12I	GWGCWC	1 cut(s)	295
BbvCI	CCTCAGC	1 cut(s)	125
BfuAI	ACCTGC	2 cut(s)	53, 236
BglI	GCCNNNNNGGC	1 cut(s)	99
Bme18I	GGWCC	1 cut(s)	16
BmgT120I	GGNCC	2 cut(s)	16, 365
Bpu10I	CCTNAGC	1 cut(s)	125
Bsa29I	ATCGAT	1 cut(s)	243
BsaJI	CCNNGG	1 cut(s)	361
BseCI	ATCGAT	1 cut(s)	243
BseDI	CCNNGG	1 cut(s)	361
BseGI	GGATG	1 cut(s)	135
BseMII	CTCAG	2 cut(s)	139, 216
BseRI	GAGGAG	1 cut(s)	68
BseSI	GKGCMC	1 cut(s)	295
BshFI	GGCC	1 cut(s)	366
BshVI	ATCGAT	1 cut(s)	243
BsiHKAI	GWGCWC	1 cut(s)	295
BslFI	GGGAC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	366
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	1 cut(s)	343
BspACI	CCGC	4 cut(s)	40, 106, 116, 181
BspANI	GGCC	1 cut(s)	366
BspCNI	CTCAG	2 cut(s)	138, 215
BspDI	ATCGAT	1 cut(s)	243
BspMI	ACCTGC	2 cut(s)	53, 236
BsrBI	CCGCTC	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	1 cut(s)	343
Bst4CI	ACNGT	1 cut(s)	335
BstC8I	GCNNGC	1 cut(s)	356
BstDEI	CTNAG	2 cut(s)	125, 202
BstDSI	CCRYGG	1 cut(s)	361
BstF5I	GGATG	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	225
BstKTI	GATC	1 cut(s)	346
BstMBI	GATC	1 cut(s)	343
BstMWI	GCNNNNNNNGC	3 cut(s)	99, 355, 414
BstNSI	RCATGY	1 cut(s)	268
BstSLI	GKGCMC	1 cut(s)	295
Bsu15I	ATCGAT	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	366
BsuTUI	ATCGAT	1 cut(s)	243
BtgI	CCRYGG	1 cut(s)	361
BtsCI	GGATG	1 cut(s)	135
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	2 cut(s)	136, 293
BveI	ACCTGC	2 cut(s)	53, 236
Cac8I	GCNNGC	1 cut(s)	356
CfoI	GCGC	1 cut(s)	225
Cfr13I	GGNCC	2 cut(s)	16, 365
ClaI	ATCGAT	1 cut(s)	243
CseI	GACGC	1 cut(s)	199
CviAII	CATG	1 cut(s)	265
CviJI	RGCY	7 cut(s)	68, 102, 173, 301, 349, 366, 376
CviKI_1	RGCY	7 cut(s)	68, 102, 173, 301, 349, 366, 376
DdeI	CTNAG	2 cut(s)	125, 202
DpnI	GATC	1 cut(s)	345
DpnII	GATC	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	317
EcoO109I	RGGNCCY	1 cut(s)	16
FaeI	CATG	1 cut(s)	268
FaiI	YATR	2 cut(s)	57, 266
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	1 cut(s)	264
FauI	CCCGC	1 cut(s)	123
FblI	GTMKAC	1 cut(s)	60
FokI	GGATG	1 cut(s)	122
GlaI	GCGC	1 cut(s)	224
HaeIII	GGCC	1 cut(s)	366
HgaI	GACGC	1 cut(s)	199
HhaI	GCGC	1 cut(s)	225
Hin1II	CATG	1 cut(s)	268
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	3 cut(s)	152, 200, 245
Hpy166II	GTNNAC	2 cut(s)	61, 293
Hpy188I	TCNGA	2 cut(s)	205, 339
Hpy8I	GTNNAC	2 cut(s)	61, 293
HpyAV	CCTTC	2 cut(s)	98, 430
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	4 cut(s)	23, 231, 293, 431
HpyF10VI	GCNNNNNNNGC	3 cut(s)	99, 355, 414
HpyF3I	CTNAG	2 cut(s)	125, 202
HpySE526I	ACGT	1 cut(s)	234
Hsp92II	CATG	1 cut(s)	268
HspAI	GCGC	1 cut(s)	223
Kzo9I	GATC	1 cut(s)	343
LmnI	GCTCC	1 cut(s)	363
LpnPI	CCDG	5 cut(s)	58, 228, 233, 241, 315
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	1 cut(s)	345
MbiI	CCGCTC	1 cut(s)	118
MboI	GATC	1 cut(s)	343
MboII	GAAGA	4 cut(s)	19, 28, 179, 269
MhlI	GDGCHC	1 cut(s)	295
MluCI	AATT	2 cut(s)	325, 411
MlyI	GAGTC	2 cut(s)	146, 194
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	8 cut(s)	80, 86, 89, 104, 134, 173, 325, 366
MseI	TTAA	2 cut(s)	324, 448
MslI	CAYNNNNRTG	1 cut(s)	54
MwoI	GCNNNNNNNGC	3 cut(s)	99, 355, 414
NdeII	GATC	1 cut(s)	343
NlaIII	CATG	1 cut(s)	268
NspI	RCATGY	1 cut(s)	268
PaqCI	CACCTGC	2 cut(s)	53, 236
PcsI	WCGNNNNNNNCGW	2 cut(s)	147, 240
PfeI	GAWTC	1 cut(s)	245
PleI	GAGTC	2 cut(s)	146, 194
PpsI	GAGTC	2 cut(s)	146, 194
PpuMI	RGGWCCY	1 cut(s)	16
Psp5II	RGGWCCY	1 cut(s)	16
PspPI	GGNCC	2 cut(s)	16, 365
PspPPI	RGGWCCY	1 cut(s)	16
RseI	CAYNNNNRTG	1 cut(s)	54
SalI	GTCGAC	1 cut(s)	59
SaqAI	TTAA	2 cut(s)	324, 448
Sau3AI	GATC	1 cut(s)	343
Sau96I	GGNCC	2 cut(s)	16, 365
SchI	GAGTC	2 cut(s)	146, 194
SduI	GDGCHC	1 cut(s)	295
SetI	ASST	9 cut(s)	18, 47, 78, 90, 126, 230, 237, 351, 441
SinI	GGWCC	1 cut(s)	16
SmiMI	CAYNNNNRTG	1 cut(s)	54
Sse9I	AATT	2 cut(s)	325, 411
SsiI	CCGC	4 cut(s)	40, 106, 116, 181
TaaI	ACNGT	1 cut(s)	335
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	4 cut(s)	60, 81, 165, 243
TasI	AATT	2 cut(s)	325, 411
TfiI	GAWTC	1 cut(s)	245
Tru1I	TTAA	2 cut(s)	324, 448
Tru9I	TTAA	2 cut(s)	324, 448
TscAI	CASTG	2 cut(s)	136, 300
TspDTI	ATGAA	1 cut(s)	410
TspGWI	ACGGA	1 cut(s)	350
TspRI	CASTG	2 cut(s)	136, 300
VneI	GTGCAC	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	16
XceI	RCATGY	1 cut(s)	268
XmiI	GTMKAC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.