Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006735

Physical Location & Seq

Genomic Coordinates Reverse (-)

66445949 .. 66448021

Gene Structure 2073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00274830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2073 bp

ATGTTCCTCACAACTCTCCCATCCACCAAAACCCCAATCACCCCCAAAACCCTAACCATTCCTCTCACCTTCTTCTTCACACACACCACCTCACCCTCTCACCACGAACAACCCCAAAACCAGCTCGACCAAATAAGCATAGACAACACACCATACTGGACCAAAACCATCCACGACCTCTGCACCCGCCACCGCAATGTCGACCAAGCCCTCCACCTCCTCGACCACCTCCGCCTCCGTGGCTACCGCCCCAACCCGCTCAACCTCAGCAGCATCATCCACGCCCTCTGCGACTTCAACCGCTTCGAAGAAGCCCACCATCGCTTCGCCCACTCCATCGACTCAGACTGCGTCCCTGACCAGCGCACCTGCAACGTCATCATCGCTCGGCTACTCGATTCGGAATCCCCGCACAGCACGTTGGGTGTTCTTCGCGTTTTGAGTGTACTGAAGCCTGATTTTGTTGCCTCTTTGGTTAACTACAACCGTCTGATGGATCAGCTCTGCTCGCTCCGGCGGCCCAGTGAGGCTCATAGAGTGTTGTTTGACATGCTTATTCGAGGGCATTGCCCCAACGCGGTTTCTTACACTACATTGATTAACGGGTACTGCGGCGTTGGCGAGTTGGGTAATGCACACAAGGTGTTTGATGAAATGTGTGAGAGGGGTGTAGCGCCTAATTCGATGACTTATAGTGTGTTGATTCGTGGCGTTCTTCGGAAGCGGGGTATTGGGGGTGCTATGGAATTGATGGGAAGATTGTGGGAGACAATGAAGGCCGAAGATGACACACTTGTGAAAAATGCCGCATTCTCGAATTTGATAGATTCTATGTGTAGAGAAGGGTATTTTCAAGAGGTTTTCGGTATTGCAGAAGATAGGCCACAGGGGGAAAGTGTGAATGAGGAGTTTGCTTATGGACAGATGATAGATTCGCTTTGTCAAGCCGGAAGGCATCATGGGGCGTCGAGAATTGTGTACATCATGAGGCATAGAGGGTTTGTTCCACGCATAACGTCGTATAATTGTATTATACATGGACTGAGCAAGGAGGGGGAGGGAGGTTGTATGAGAGCTTATCAGTTGTTGGAGGATGGGATTGAGTTTGGTTACTTGCCGTCTGAGTACACTTACAAGGTTCTAGTGGAAGGTCTTTGCCAAGAATCTGACATTGACAAGGCGCGGCAGGTTCTTCAATATATGTTAAAGAAGGAAAGAGTGGACAAAACCAGGATGTATAATATATATTTGAGAGCTCTATGTCGTGTTAATAACACGACTGAGCTTTTGAATGTGCTTGTTTCGATGCTCCAGACCGAGTGTCACCCTGATGTGATCACCCTAAACATAGTTGTCAACGGGTTCTGCAAGATGGGGAGAGTGGAAGAAGCTTTAAAGGTACTGGATGATATGATGACTGGAAAATTTTGTGCGCCGAATGTAGTGACCTTCACAACTATCATTAATGGTTTGTTAAATGTTGGTAGAACGCAAGAAGCTCTTGGTATGTTGCATGATGTAATGCCTCAGAAAGGTTTTCGCCCTAATGTTGTGACATATAATGCTGTTCTTCGTGGTTTGTTTAAACTTAATCAAGGAAGGGAAGCAATGGAGATTTTCAATGGCATGGTAACTGAGGGTGTGACTGCTGATAGTACCACTTACACAATTATAATTGATGGGTTATGTGAGTCTGATAAGCTAGAAGAGGCTAAGAGGTTCTGGGATGAGGTTATTTGGCCCTCACAGATCCATGACAATTTTGTATATGCAGCCATCATCAAAGGGATTTGCCATTCAGGAAATTTTGATGAGGCATGTCATTTCCTTTACGAACTTGTAGACTCTGGGGTCTCTCCGAATATATTCAGTTACAACATTGTGATCGACACTGCTTACAAACTAGGTCTGAAGAAAGAGGCATATGAAGTTGTAAGAGAGATGAGGAGAAATGGGCTGGCTCCAGATTCTGTAACTTGGAGGATTCTTGACAAGTTACACGGCAACTCAAGAAAACAGTATGGGGATGATGAGGCTTCAACTTTGCAATTCGGAAACGGACCGCATGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

690

Amino Acids

78.09

Weight (kDa)

6.18

Isoelectric Point (pI)

32.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	158 - 204	7.2e-11	PPR repeat family
PPR_3	PF13812	180 - 235	1.1e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	187 - 219	2.2e-11	PPR repeat
PPR_2	PF13041	191 - 238	2.4e-17	PPR repeat family
PPR	PF01535	194 - 224	2e-07	PPR repeat
PPR_2	PF13041	336 - 387	8.6e-07	PPR repeat family
PPR_1	PF12854	370 - 401	3.7e-06	PPR repeat
PPR_2	PF13041	412 - 457	2.4e-08	PPR repeat family
PPR_1	PF12854	440 - 471	5.9e-13	PPR repeat
PPR_2	PF13041	443 - 492	8.2e-14	PPR repeat family
PPR	PF01535	446 - 472	3.7e-06	PPR repeat
PPR_2	PF13041	479 - 529	9.8e-13	PPR repeat family
PPR_3	PF13812	506 - 560	1.4e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	515 - 563	1.8e-16	PPR repeat family
PPR_1	PF12854	547 - 577	5.1e-07	PPR repeat
PPR_2	PF13041	586 - 631	5.2e-09	PPR repeat family
PPR_2	PF13041	621 - 663	1.3e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0006735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18020
fragaria_vesca	FvH4_5g17250
malus_domestica	MD06G1231100.v1.1
prunus_persica	Prupe.5G232400_v2.0.a1
pyrus_communis	pycom06g20240
rosa_chinensis	RchiOBHm_Chr7g0178541
rosa_laevigata	RLG00000005439 RLG00000010173
rosa_multiflora	Rmu_sc0000775.1_g000015 Rmu_sc0000961.1_g000015 Rmu_sc0002421.1_g000004 Rmu_sc0003637.1_g000006 Rmu_sc0011483.1_g000001 Rmu_sc0016060.1_g000005 Rmu_ssc0000343.1_g000033
rosa_roxburghii	Rroxscaffold_3G00274830 Rroxscaffold_5G00333820
rosa_rugosa	Rorug06G0417900
rosa_samantha	Rh3CG367500 Rh4AG426400 Rh4DG434700 Rh7AG016400 Rh7BG015900 Rh7CG016600 Rh7DG016500
rosa_wichuraiana	Rw7G001300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1673
AarI	CACCTGC	1 cut(s)	377
AasI	GACNNNNNNGTC	1 cut(s)	1850
Acc36I	ACCTGC	2 cut(s)	377, 1177
AccBSI	CCGCTC	1 cut(s)	259
AccI	GTMKAC	2 cut(s)	201, 1842
AccII	CGCG	3 cut(s)	435, 578, 1183
AclWI	GGATC	2 cut(s)	504, 1744
AcsI	RAATTY	3 cut(s)	817, 1424, 1804
AcuI	CTGAAG	2 cut(s)	470, 1931
AcyI	GRCGYC	1 cut(s)	965
AdeI	CACNNNGTG	1 cut(s)	643
AfaI	GTAC	6 cut(s)	447, 608, 980, 1127, 1401, 1657
AfiI	CCNNNNNNNGG	3 cut(s)	493, 577, 1532
AgsI	TTSAA	6 cut(s)	298, 854, 1196, 1291, 1621, 2040
AhdI	GACNNNNNGTC	1 cut(s)	1320
AjnI	CCWGG	1 cut(s)	1229
AleI	CACNNNNGTG	1 cut(s)	794
AluBI	AGCT	8 cut(s)	124, 502, 1076, 1256, 1285, 1391, 1499, 1702
AluI	AGCT	8 cut(s)	124, 502, 1076, 1256, 1285, 1391, 1499, 1702
Alw21I	GWGCWC	1 cut(s)	1258
Alw26I	GTCTC	2 cut(s)	761, 1858
AlwI	GGATC	2 cut(s)	504, 1744
AlwNI	CAGNNNCTG	1 cut(s)	1970
AoxI	GGCC	4 cut(s)	518, 777, 881, 1739
ApeKI	GCWGC	2 cut(s)	270, 1772
ApoI	RAATTY	3 cut(s)	817, 1424, 1804
ArsI	GACNNNNNNTTYG	2 cut(s)	1270, 1302
AseI	ATTAAT	1 cut(s)	1464
Asp700I	GAANNNNTTC	1 cut(s)	1865
AspLEI	GCGC	4 cut(s)	366, 676, 1183, 1435
AspS9I	GGNCC	4 cut(s)	159, 519, 1740, 2060
AsuHPI	GGTGA	6 cut(s)	31, 58, 84, 92, 1316, 1330
AsuII	TTCGAA	1 cut(s)	306
AvaII	GGWCC	2 cut(s)	159, 2060
BanII	GRGCYC	1 cut(s)	1258
Bbv12I	GWGCWC	1 cut(s)	1258
BbvCI	CCTCAGC	1 cut(s)	266
BbvI	GCAGC	2 cut(s)	282, 1784
BceAI	ACGGC	2 cut(s)	1102, 2017
BcgI	CGANNNNNNTGC	2 cut(s)	549, 583
BciT130I	CCWGG	1 cut(s)	1231
BclI	TGATCA	1 cut(s)	1335
BcoDI	GTCTC	2 cut(s)	761, 1858
BfaI	CTAG	3 cut(s)	1142, 1703, 1904
BfoI	RGCGCY	1 cut(s)	677
BfuAI	ACCTGC	2 cut(s)	377, 1177
BglI	GCCNNNNNGGC	1 cut(s)	240
BisI	GCNGC	6 cut(s)	271, 518, 613, 807, 1184, 1773
BlsI	GCNGC	6 cut(s)	272, 519, 614, 808, 1185, 1774
Bme1390I	CCNGG	1 cut(s)	1231
Bme18I	GGWCC	2 cut(s)	159, 2060
BmeRI	GACNNNNNGTC	1 cut(s)	1320
BmgT120I	GGNCC	4 cut(s)	159, 519, 1740, 2060
BmiI	GGNNCC	1 cut(s)	1962
BmrFI	CCNGG	1 cut(s)	1231
BmrI	ACTGGG	1 cut(s)	516
BmsI	GCATC	3 cut(s)	282, 964, 1296
BmuI	ACTGGG	1 cut(s)	516
BpmI	CTGGAG	2 cut(s)	1295, 1947
Bpu10I	CCTNAGC	1 cut(s)	266
Bpu14I	TTCGAA	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	1993
BsaHI	GRCGYC	1 cut(s)	965
BsaI	GGTCTC	1 cut(s)	1858
BsaJI	CCNNGG	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	3 cut(s)	493, 577, 1532
Bse1I	ACTGG	4 cut(s)	161, 522, 1407, 1423
Bse3DI	GCAATG	3 cut(s)	202, 565, 1614
BseBI	CCWGG	1 cut(s)	1231
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	8 cut(s)	20, 168, 276, 1099, 1239, 1411, 1732, 2032
BseLI	CCNNNNNNNGG	3 cut(s)	493, 577, 1532
BseMI	GCAATG	3 cut(s)	202, 565, 1614
BseMII	CTCAG	7 cut(s)	280, 357, 1034, 1113, 1272, 1541, 1626
BseNI	ACTGG	4 cut(s)	161, 522, 1407, 1423
BseRI	GAGGAG	3 cut(s)	209, 920, 1960
BseXI	GCAGC	2 cut(s)	282, 1784
BsgI	GTGCAG	1 cut(s)	166
Bsh1236I	CGCG	3 cut(s)	435, 578, 1183
BshFI	GGCC	4 cut(s)	520, 779, 883, 1741
BsiHKAI	GWGCWC	1 cut(s)	1258
BsiSI	CCGG	2 cut(s)	514, 948
BslFI	GGGAC	1 cut(s)	338
BslI	CCNNNNNNNGG	3 cut(s)	493, 577, 1532
BsmAI	GTCTC	2 cut(s)	761, 1858
BsmFI	GGGAC	1 cut(s)	338
BsmI	GAATGC	1 cut(s)	809
BsnI	GGCC	4 cut(s)	520, 779, 883, 1741
Bso31I	GGTCTC	1 cut(s)	1858
Bsp119I	TTCGAA	1 cut(s)	306
Bsp1286I	GDGCHC	1 cut(s)	1258
Bsp1407I	TGTACA	1 cut(s)	978
Bsp143I	GATC	4 cut(s)	496, 1335, 1749, 1884
BspANI	GGCC	4 cut(s)	520, 779, 883, 1741
BspCNI	CTCAG	7 cut(s)	279, 356, 1035, 1114, 1273, 1540, 1627
BspFNI	CGCG	3 cut(s)	435, 578, 1183
BspHI	TCATGA	1 cut(s)	984
BspLI	GGNNCC	1 cut(s)	1962
BspMI	ACCTGC	2 cut(s)	377, 1177
BspPI	GGATC	2 cut(s)	504, 1744
BspT104I	TTCGAA	1 cut(s)	306
BspTNI	GGTCTC	1 cut(s)	1858
BsrBI	CCGCTC	1 cut(s)	259
BsrDI	GCAATG	3 cut(s)	202, 565, 1614
BsrGI	TGTACA	1 cut(s)	978
BsrI	ACTGG	4 cut(s)	161, 522, 1407, 1423
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	4 cut(s)	496, 1335, 1749, 1884
BssNI	GRCGYC	1 cut(s)	965
Bst2UI	CCWGG	1 cut(s)	1231
Bst4CI	ACNGT	2 cut(s)	488, 2019
Bst6I	CTCTTC	1 cut(s)	1701
BstACI	GRCGYC	1 cut(s)	965
BstAUI	TGTACA	1 cut(s)	978
BstBI	TTCGAA	1 cut(s)	306
BstC8I	GCNNGC	2 cut(s)	509, 1959
BstDEI	CTNAG	8 cut(s)	266, 343, 1043, 1122, 1281, 1527, 1635, 1713
BstDSI	CCRYGG	1 cut(s)	238
BstENI	CCTNNNNNAGG	1 cut(s)	1530
BstF5I	GGATG	8 cut(s)	20, 168, 276, 1099, 1239, 1411, 1732, 2032
BstFNI	CGCG	3 cut(s)	435, 578, 1183
BstH2I	RGCGCY	1 cut(s)	677
BstHHI	GCGC	4 cut(s)	366, 676, 1183, 1435
BstKTI	GATC	4 cut(s)	499, 1338, 1752, 1887
BstMAI	GTCTC	2 cut(s)	761, 1858
BstMBI	GATC	4 cut(s)	496, 1335, 1749, 1884
BstMWI	GCNNNNNNNGC	4 cut(s)	240, 508, 517, 618
BstNI	CCWGG	1 cut(s)	1231
BstNSI	RCATGY	2 cut(s)	553, 1821
BstSCI	CCNGG	1 cut(s)	1229
BstUI	CGCG	3 cut(s)	435, 578, 1183
BstV1I	GCAGC	2 cut(s)	282, 1784
BstX2I	RGATCY	1 cut(s)	1749
BstYI	RGATCY	1 cut(s)	1749
BsuRI	GGCC	4 cut(s)	520, 779, 883, 1741
BtgI	CCRYGG	1 cut(s)	238
BtgZI	GCGATG	2 cut(s)	305, 367
BtsCI	GGATG	8 cut(s)	20, 168, 276, 1099, 1239, 1411, 1732, 2032
BtsI	GCAGTG	1 cut(s)	1890
BtsIMutI	CAGTG	2 cut(s)	529, 1890
BveI	ACCTGC	2 cut(s)	377, 1177
Cac8I	GCNNGC	2 cut(s)	509, 1959
CaiI	CAGNNNCTG	1 cut(s)	1970
CciI	TCATGA	1 cut(s)	984
CfoI	GCGC	4 cut(s)	366, 676, 1183, 1435
Cfr13I	GGNCC	4 cut(s)	159, 519, 1740, 2060
CpoI	CGGWCCG	1 cut(s)	2060
CseI	GACGC	2 cut(s)	340, 954
Csp6I	GTAC	6 cut(s)	446, 607, 979, 1126, 1400, 1656
CspI	CGGWCCG	1 cut(s)	2060
CviAII	CATG	9 cut(s)	550, 959, 985, 1037, 1514, 1627, 1754, 1818, 2066
CviQI	GTAC	6 cut(s)	446, 607, 979, 1126, 1400, 1656
DdeI	CTNAG	8 cut(s)	266, 343, 1043, 1122, 1281, 1527, 1635, 1713
DpnI	GATC	4 cut(s)	498, 1337, 1751, 1886
DpnII	GATC	4 cut(s)	496, 1335, 1749, 1884
DraI	TTTAAA	2 cut(s)	1395, 1585
DraIII	CACNNNGTG	1 cut(s)	643
DrdI	GACNNNNNNGTC	1 cut(s)	1850
DriI	GACNNNNNGTC	1 cut(s)	1320
DseDI	GACNNNNNNGTC	1 cut(s)	1850
Eam1104I	CTCTTC	1 cut(s)	1701
Eam1105I	GACNNNNNGTC	1 cut(s)	1320
EarI	CTCTTC	1 cut(s)	1701
EciI	GGCGGA	1 cut(s)	221
Ecl136II	GAGCTC	1 cut(s)	1256
Eco24I	GRGCYC	1 cut(s)	1258
Eco31I	GGTCTC	1 cut(s)	1858
Eco47I	GGWCC	2 cut(s)	159, 2060
Eco53kI	GAGCTC	1 cut(s)	1256
Eco57I	CTGAAG	2 cut(s)	470, 1931
EcoICRI	GAGCTC	1 cut(s)	1256
EcoNI	CCTNNNNNAGG	1 cut(s)	1530
EcoRII	CCWGG	1 cut(s)	1229
EcoT38I	GRGCYC	1 cut(s)	1258
FaeI	CATG	9 cut(s)	553, 962, 988, 1040, 1517, 1630, 1757, 1821, 2069
FalI	AAGNNNNNCTT	2 cut(s)	1485, 1517
FaqI	GGGAC	1 cut(s)	338
FatI	CATG	9 cut(s)	549, 958, 984, 1036, 1513, 1626, 1753, 1817, 2065
FauI	CCCGC	4 cut(s)	194, 264, 417, 717
FauNDI	CATATG	1 cut(s)	1924
FbaI	TGATCA	1 cut(s)	1335
FblI	GTMKAC	2 cut(s)	201, 1842
Fnu4HI	GCNGC	6 cut(s)	271, 518, 613, 807, 1184, 1773
FokI	GGATG	8 cut(s)	7, 155, 263, 1106, 1246, 1418, 1739, 2039
FriOI	GRGCYC	1 cut(s)	1258
Fsp4HI	GCNGC	6 cut(s)	271, 518, 613, 807, 1184, 1773
FspBI	CTAG	3 cut(s)	1142, 1703, 1904
GlaI	GCGC	4 cut(s)	365, 675, 1182, 1434
GluI	GCNGC	6 cut(s)	271, 518, 613, 807, 1184, 1773
GsuI	CTGGAG	2 cut(s)	1295, 1947
HaeII	RGCGCY	1 cut(s)	677
HaeIII	GGCC	4 cut(s)	520, 779, 883, 1741
HapII	CCGG	2 cut(s)	514, 948
HgaI	GACGC	2 cut(s)	340, 954
HhaI	GCGC	4 cut(s)	366, 676, 1183, 1435
Hin1I	GRCGYC	1 cut(s)	965
Hin1II	CATG	9 cut(s)	553, 962, 988, 1040, 1517, 1630, 1757, 1821, 2069
Hin6I	GCGC	4 cut(s)	364, 674, 1181, 1433
HinP1I	GCGC	4 cut(s)	364, 674, 1181, 1433
HincII	GTYRAC	3 cut(s)	202, 478, 1357
HindII	GTYRAC	3 cut(s)	202, 478, 1357
HindIII	AAGCTT	1 cut(s)	1389
HpaI	GTTAAC	1 cut(s)	478
HpaII	CCGG	2 cut(s)	514, 948
HphI	GGTGA	6 cut(s)	31, 58, 84, 92, 1316, 1330
Hpy166II	GTNNAC	8 cut(s)	202, 446, 478, 979, 1128, 1222, 1357, 1843
Hpy188III	TCNNGA	9 cut(s)	814, 854, 969, 985, 1312, 1800, 1964, 1988, 2010
Hpy8I	GTNNAC	8 cut(s)	202, 446, 478, 979, 1128, 1222, 1357, 1843
Hpy99I	CGWCG	2 cut(s)	970, 1021
HpyAV	CCTTC	8 cut(s)	79, 769, 836, 945, 1142, 1204, 1459, 1593
HpyCH4III	ACNGT	2 cut(s)	488, 2019
HpyCH4IV	ACGT	3 cut(s)	375, 419, 1016
HpyCH4V	TGCA	8 cut(s)	183, 372, 635, 872, 1368, 1513, 1772, 2047
HpyF10VI	GCNNNNNNNGC	4 cut(s)	240, 508, 517, 618
HpyF3I	CTNAG	8 cut(s)	266, 343, 1043, 1122, 1281, 1527, 1635, 1713
HpySE526I	ACGT	3 cut(s)	375, 419, 1016
Hsp92I	GRCGYC	1 cut(s)	965
Hsp92II	CATG	9 cut(s)	553, 962, 988, 1040, 1517, 1630, 1757, 1821, 2069
HspAI	GCGC	4 cut(s)	364, 674, 1181, 1433
Ksp22I	TGATCA	1 cut(s)	1335
KspAI	GTTAAC	1 cut(s)	478
Kzo9I	GATC	4 cut(s)	496, 1335, 1749, 1884
LmnI	GCTCC	3 cut(s)	516, 1314, 1966
Lsp1109I	GCAGC	2 cut(s)	282, 1784
LweI	GCATC	3 cut(s)	282, 964, 1296
MaeI	CTAG	3 cut(s)	1142, 1703, 1904
MaeII	ACGT	3 cut(s)	375, 419, 1016
MaeIII	GTNAC	9 cut(s)	1109, 1322, 1444, 1552, 1630, 1642, 1871, 1972, 1995
MalI	GATC	4 cut(s)	498, 1337, 1751, 1886
MbiI	CCGCTC	1 cut(s)	259
MboI	GATC	4 cut(s)	496, 1335, 1749, 1884
MflI	RGATCY	1 cut(s)	1749
MhlI	GDGCHC	1 cut(s)	1258
MlyI	GAGTC	3 cut(s)	335, 1700, 1838
MmeI	TCCRAC	1 cut(s)	1068
MroXI	GAANNNNTTC	1 cut(s)	1865
MseI	TTAA	9 cut(s)	477, 600, 1205, 1269, 1394, 1464, 1475, 1584, 1590
MslI	CAYNNNNRTG	3 cut(s)	195, 794, 1329
MspI	CCGG	2 cut(s)	514, 948
MspR9I	CCNGG	1 cut(s)	1231
MssI	GTTTAAAC	1 cut(s)	1585
Mva1269I	GAATGC	1 cut(s)	809
MvaI	CCWGG	1 cut(s)	1231
MvnI	CGCG	3 cut(s)	435, 578, 1183
MwoI	GCNNNNNNNGC	4 cut(s)	240, 508, 517, 618
NdeI	CATATG	1 cut(s)	1924
NdeII	GATC	4 cut(s)	496, 1335, 1749, 1884
NlaIII	CATG	9 cut(s)	553, 962, 988, 1040, 1517, 1630, 1757, 1821, 2069
NlaIV	GGNNCC	1 cut(s)	1962
NmeAIII	GCCGAG	1 cut(s)	367
NmuCI	GTSAC	4 cut(s)	1322, 1444, 1552, 1642
NspI	RCATGY	2 cut(s)	553, 1821
NspV	TTCGAA	1 cut(s)	306
OliI	CACNNNNGTG	1 cut(s)	794
PagI	TCATGA	1 cut(s)	984
PaqCI	CACCTGC	1 cut(s)	377
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PctI	GAATGC	1 cut(s)	809
PdmI	GAANNNNTTC	1 cut(s)	1865
PfeI	GAWTC	8 cut(s)	398, 404, 703, 827, 932, 1163, 1967, 1984
PflFI	GACNNNGTC	1 cut(s)	350
PkrI	GCNGC	6 cut(s)	272, 519, 614, 808, 1185, 1774
PleI	GAGTC	3 cut(s)	335, 1699, 1838
PmeI	GTTTAAAC	1 cut(s)	1585
PpsI	GAGTC	3 cut(s)	335, 1699, 1838
PshBI	ATTAAT	1 cut(s)	1464
PsiI	TTATAA	1 cut(s)	1673
Psp124BI	GAGCTC	1 cut(s)	1258
Psp6I	CCWGG	1 cut(s)	1229
PspGI	CCWGG	1 cut(s)	1229
PspN4I	GGNNCC	1 cut(s)	1962
PspPI	GGNCC	4 cut(s)	159, 519, 1740, 2060
PstNI	CAGNNNCTG	1 cut(s)	1970
PsuI	RGATCY	1 cut(s)	1749
PsyI	GACNNNGTC	1 cut(s)	350
RsaI	GTAC	6 cut(s)	447, 608, 980, 1127, 1401, 1657
RsaNI	GTAC	6 cut(s)	446, 607, 979, 1126, 1400, 1656
RseI	CAYNNNNRTG	3 cut(s)	195, 794, 1329
Rsr2I	CGGWCCG	1 cut(s)	2060
RsrII	CGGWCCG	1 cut(s)	2060
SacI	GAGCTC	1 cut(s)	1258
SalI	GTCGAC	1 cut(s)	200
SaqAI	TTAA	9 cut(s)	477, 600, 1205, 1269, 1394, 1464, 1475, 1584, 1590
SatI	GCNGC	6 cut(s)	271, 518, 613, 807, 1184, 1773
Sau3AI	GATC	4 cut(s)	496, 1335, 1749, 1884
Sau96I	GGNCC	4 cut(s)	159, 519, 1740, 2060
SchI	GAGTC	3 cut(s)	335, 1700, 1838
ScrFI	CCNGG	1 cut(s)	1231
SduI	GDGCHC	1 cut(s)	1258
SfaNI	GCATC	3 cut(s)	282, 964, 1296
SfuI	TTCGAA	1 cut(s)	306
SinI	GGWCC	2 cut(s)	159, 2060
SmiMI	CAYNNNNRTG	3 cut(s)	195, 794, 1329
SmlI	CTYRAG	1 cut(s)	2008
SmoI	CTYRAG	1 cut(s)	2008
SspMI	CTAG	3 cut(s)	1142, 1703, 1904
SstI	GAGCTC	1 cut(s)	1258
StyD4I	CCNGG	1 cut(s)	1229
TaaI	ACNGT	2 cut(s)	488, 2019
TaiI	ACGT	3 cut(s)	378, 422, 1019
TaqII	GACCGA	1 cut(s)	1331
TatI	WGTACW	3 cut(s)	445, 978, 1125
TauI	GCSGC	4 cut(s)	520, 615, 809, 1186
TfiI	GAWTC	8 cut(s)	398, 404, 703, 827, 932, 1163, 1967, 1984
Tru1I	TTAA	9 cut(s)	477, 600, 1205, 1269, 1394, 1464, 1475, 1584, 1590
Tru9I	TTAA	9 cut(s)	477, 600, 1205, 1269, 1394, 1464, 1475, 1584, 1590
TscAI	CASTG	2 cut(s)	529, 1897
TseFI	GTSAC	4 cut(s)	1322, 1444, 1552, 1642
TseI	GCWGC	2 cut(s)	270, 1772
Tsp45I	GTSAC	4 cut(s)	1322, 1444, 1552, 1642
TspDTI	ATGAA	3 cut(s)	666, 788, 1941
TspGWI	ACGGA	2 cut(s)	227, 2073
TspRI	CASTG	2 cut(s)	529, 1897
Tth111I	GACNNNGTC	1 cut(s)	350
VpaK11BI	GGWCC	2 cut(s)	159, 2060
VspI	ATTAAT	1 cut(s)	1464
XagI	CCTNNNNNAGG	1 cut(s)	1530
XapI	RAATTY	3 cut(s)	817, 1424, 1804
XceI	RCATGY	2 cut(s)	553, 1821
XmiI	GTMKAC	2 cut(s)	201, 1842
XmnI	GAANNNNTTC	1 cut(s)	1865
XspI	CTAG	3 cut(s)	1142, 1703, 1904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.