Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0006735

Physical Location & Seq

Genomic Coordinates Forward (+)

1354761 .. 1357413

Gene Structure 2653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG016500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2073 bp

ATGTTCCTGACAACTCTCCCATCCACCAAAACCCCAATCACCCCCAAAACCCTAACCATCCCTCTCACCTTGTTCTTCACACACACCACCTCACCCTCTCACCACGAACAACCCCAAAACCAGCTCGACCAAATAAGCATAGACAACACACCATACTGGACCAAAACCATCCACGACCTCTGCACCCGCCACCGCGATGTCGACCAAGCCCTCCACCTCCTCGACCACCTCCGCCTCCGTGGCTACCGCCCCAACCCGCTCAACCTCAGCAGCATCATCCACGCCCTCTGCGACTCCAGCCGGTTCGAAGAAGCCCACCATCGCTTCGCCCACTCCATCGACTCAGACTGCGTCCCTGACCAGCGCACCTGCAACGTCATCATCGCTCGGCTACTGGATTCGGAGACCCCGCACAGCACGTTGGGTGTTCTTCGCGTTTTGAGTCCACTGAAGCCTGATTTTGTAGCCTCTTTGGTTAATTACAACCGTCTGATGGATCAGCTCTGCTCGCTCCGGCGGCCCAGTGAGGCTCATAGAGTGTTGTTTGACATGCTTATGAGAGGGCATTGCCCCAACGCGGTTTCTTACACTACATTGATTAACGGGTACTGCGGCGTTGGCGAGTTGGGTAATGCACACAAGGTGTTTGATGAAATGTGTGAGAGGGGTGCAGCGCCTAATTCGATGACTTATAGTGTGTTGATTCGTGGCGTTCTTCGGAAGCGGGATATTGGGGGTGCTATGGAATTGATGGGAAGATTGTGGGAGACAATGAAGGGTGAAGAGGACGCACTTGTGAAAAATGCGGCTTTCTCGAATTTGATTGATTCTATGTGTAGAGAAGGGTATTTTCAAGAGGTTTTCGGTATTGCAGAAGATAGGCCACAGGGGGAGAGTGTGAATGAGGAGTTTGCTTATGGACAGATGATAGATTCGCTTTGTATAGCCGGAAGGCATCATGGGGCGTCGAGAATTGTGTACATCATGAGGCATAGAGGGTTTGTTCCACGCATAACGTCGTATAATTGTATCATACATGGACTGAGCAAGGAGGGGGAGGGAGGTTGTATGAGAGCTTATCAGTTGTTGGAGGAAGGGATTGAGTTTGGTTACTTGCCGTCTGAGTACACTTACAAGGTTCTAGTGGAAGGTCTTTGCCAAGAGTCCGACGTTGACAAGGCGCGGCAGGTTCTTCAATATATGTTAAAGAAGGAAAGAGTGGACAAAACCAGGATGTATAATATATATTTGAGAGCTCTATGTCTTGTTAATAACACGACTGAGCTTTTGAATGTGCTTGTTTCGATGCTCCAGACCGAGTGTCAGCCTGATGTGATCACCCTAAACATAGTTGTCAACGGGTTCTGCAAGATGGGGAGAGTGGAAGAAGCTTTAAAGGTACTGGATGATATGATGACTGGAAAATTTTGTGCGCCGAATGTAGTGACCTTCACAACTATCATTAATGGTTTGTTAAATGTTGGTAGAACGCAAGAAGCTCTTGGTATGTTGCGTGATGTAATGCCTCAGAAAGGTTTTCGCCCTAATGTTGTGACATATAATGCAATTCTTCGTGGTTTGTTTAAACTTAATCAAGGAAGGGAAGCAATGGAGATTTTCAATGGCATGGTAACTGAGGGTGTGGCTGCAGATAGTACCACTTACACAATTATAATTGATGGGTTATGTGAGTCTGATCAGCTAGAAGAGGCTAAGAGGTTCTGGGATGAGGTTATTTGGCCCTCACAGATCCATGACAATTTTGTATACGCAGCCATCATCAAAGGGATTTGCCATTCAGGAAATTTTGATGAGGCATGTCATTTCCTCTACGAACTTGTAGACTCTGGGGTCTGTCCGAATATATTCAGTTACAACATTGTGATCGACACTGCTTACAAACTAGGTCTGAAGAAAGAGGCATATGAAGTTGTAAGAGAGATGAGAAGAAATGGGCTGGCTCCGGATTCTGTAACTTGGAGGATTCTTGACAAGTTACACAGCAACTCAAGAAAACAATATGGGGATGATGAGGCTTCAACTTTGCAATTCGGAAGTGGACCGCATGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

690

Amino Acids

77.96

Weight (kDa)

5.96

Isoelectric Point (pI)

34.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	158 - 204	4.3e-11	PPR repeat family
PPR_3	PF13812	180 - 235	1.9e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	187 - 219	2.2e-11	PPR repeat
PPR_2	PF13041	191 - 238	1.5e-16	PPR repeat family
PPR	PF01535	194 - 223	6.7e-07	PPR repeat
PPR_2	PF13041	336 - 387	5.5e-07	PPR repeat family
PPR_1	PF12854	370 - 401	1.2e-06	PPR repeat
PPR_2	PF13041	412 - 457	3.2e-07	PPR repeat family
PPR_1	PF12854	440 - 471	6.5e-13	PPR repeat
PPR_2	PF13041	443 - 492	7.9e-14	PPR repeat family
PPR	PF01535	446 - 472	3.7e-06	PPR repeat
PPR_2	PF13041	479 - 529	1e-12	PPR repeat family
PPR_3	PF13812	507 - 560	7.2e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	511 - 544	4.7e-06	PPR repeat
PPR_2	PF13041	515 - 563	1.2e-16	PPR repeat family
PPR_1	PF12854	547 - 577	2.2e-06	PPR repeat
PPR_2	PF13041	586 - 631	2.2e-08	PPR repeat family
PPR_2	PF13041	620 - 663	1.7e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0006735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18020
fragaria_vesca	FvH4_5g17250
malus_domestica	MD06G1231100.v1.1
prunus_persica	Prupe.5G232400_v2.0.a1
pyrus_communis	pycom06g20240
rosa_chinensis	RchiOBHm_Chr7g0178541
rosa_laevigata	RLG00000005439 RLG00000010173
rosa_multiflora	Rmu_sc0000775.1_g000015 Rmu_sc0000961.1_g000015 Rmu_sc0002421.1_g000004 Rmu_sc0003637.1_g000006 Rmu_sc0011483.1_g000001 Rmu_sc0016060.1_g000005 Rmu_ssc0000343.1_g000033
rosa_roxburghii	Rroxscaffold_3G00274830 Rroxscaffold_5G00333820
rosa_rugosa	Rorug06G0417900
rosa_samantha	Rh3CG367500 Rh4AG426400 Rh4DG434700 Rh7AG016400 Rh7BG015900 Rh7CG016600 Rh7DG016500
rosa_wichuraiana	Rw7G001300

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1673
AarI	CACCTGC	1 cut(s)	377
AasI	GACNNNNNNGTC	1 cut(s)	1850
Acc36I	ACCTGC	2 cut(s)	377, 1177
AccBSI	CCGCTC	1 cut(s)	259
AccI	GTMKAC	3 cut(s)	201, 1767, 1842
AccII	CGCG	4 cut(s)	195, 435, 578, 1183
AccIII	TCCGGA	1 cut(s)	1963
AclWI	GGATC	2 cut(s)	504, 1744
AcsI	RAATTY	3 cut(s)	817, 1424, 1804
AcuI	CTGAAG	2 cut(s)	470, 1931
AcyI	GRCGYC	1 cut(s)	965
AdeI	CACNNNGTG	1 cut(s)	643
AfaI	GTAC	5 cut(s)	608, 980, 1127, 1401, 1657
AfiI	CCNNNNNNNGG	3 cut(s)	493, 577, 1532
AgsI	TTSAA	5 cut(s)	854, 1196, 1291, 1621, 2040
AhdI	GACNNNNNGTC	1 cut(s)	1320
AjnI	CCWGG	1 cut(s)	1229
AluBI	AGCT	8 cut(s)	124, 502, 1076, 1256, 1285, 1391, 1499, 1702
AluI	AGCT	8 cut(s)	124, 502, 1076, 1256, 1285, 1391, 1499, 1702
Alw21I	GWGCWC	1 cut(s)	1258
Alw26I	GTCTC	2 cut(s)	398, 761
AlwI	GGATC	2 cut(s)	504, 1744
Aor13HI	TCCGGA	1 cut(s)	1963
AoxI	GGCC	3 cut(s)	518, 881, 1739
ApeKI	GCWGC	4 cut(s)	270, 671, 1646, 1772
ApoI	RAATTY	3 cut(s)	817, 1424, 1804
ArsI	GACNNNNNNTTYG	2 cut(s)	1270, 1302
AseI	ATTAAT	1 cut(s)	1464
Asp700I	GAANNNNTTC	1 cut(s)	1865
AspLEI	GCGC	4 cut(s)	366, 676, 1183, 1435
AspS9I	GGNCC	4 cut(s)	159, 519, 1740, 2060
AsuHPI	GGTGA	6 cut(s)	31, 58, 84, 92, 791, 1330
AsuII	TTCGAA	1 cut(s)	306
AvaII	GGWCC	2 cut(s)	159, 2060
BanII	GRGCYC	1 cut(s)	1258
Bbv12I	GWGCWC	1 cut(s)	1258
BbvCI	CCTCAGC	1 cut(s)	266
BbvI	GCAGC	4 cut(s)	282, 683, 1633, 1784
BceAI	ACGGC	1 cut(s)	1102
BciT130I	CCWGG	1 cut(s)	1231
BclI	TGATCA	2 cut(s)	1335, 1696
BcoDI	GTCTC	2 cut(s)	398, 761
BfaI	CTAG	3 cut(s)	1142, 1703, 1904
BfmI	CTRYAG	1 cut(s)	1647
BfoI	RGCGCY	1 cut(s)	677
BfuAI	ACCTGC	2 cut(s)	377, 1177
BglI	GCCNNNNNGGC	1 cut(s)	240
BisI	GCNGC	8 cut(s)	271, 518, 613, 672, 807, 1184, 1647, 1773
BlsI	GCNGC	8 cut(s)	272, 519, 614, 673, 808, 1185, 1648, 1774
Bme1390I	CCNGG	1 cut(s)	1231
Bme18I	GGWCC	2 cut(s)	159, 2060
BmeRI	GACNNNNNGTC	1 cut(s)	1320
BmgT120I	GGNCC	4 cut(s)	159, 519, 1740, 2060
BmiI	GGNNCC	1 cut(s)	1962
BmrFI	CCNGG	1 cut(s)	1231
BmrI	ACTGGG	1 cut(s)	516
BmsI	GCATC	3 cut(s)	282, 964, 1296
BmuI	ACTGGG	1 cut(s)	516
BpmI	CTGGAG	2 cut(s)	280, 1295
Bpu10I	CCTNAGC	1 cut(s)	266
Bpu14I	TTCGAA	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	1993
BsaHI	GRCGYC	1 cut(s)	965
BsaI	GGTCTC	1 cut(s)	398
BsaJI	CCNNGG	1 cut(s)	238
BsaWI	WCCGGW	1 cut(s)	1963
Bsc4I	CCNNNNNNNGG	3 cut(s)	493, 577, 1532
Bse118I	RCCGGY	1 cut(s)	300
Bse1I	ACTGG	5 cut(s)	161, 399, 522, 1407, 1423
Bse3DI	GCAATG	2 cut(s)	565, 1614
BseAI	TCCGGA	1 cut(s)	1963
BseBI	CCWGG	1 cut(s)	1231
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	8 cut(s)	20, 57, 168, 276, 1239, 1411, 1732, 2032
BseLI	CCNNNNNNNGG	3 cut(s)	493, 577, 1532
BseMI	GCAATG	2 cut(s)	565, 1614
BseMII	CTCAG	7 cut(s)	280, 357, 1034, 1113, 1272, 1541, 1626
BseNI	ACTGG	5 cut(s)	161, 399, 522, 1407, 1423
BseRI	GAGGAG	2 cut(s)	209, 920
BseXI	GCAGC	4 cut(s)	282, 683, 1633, 1784
BsgI	GTGCAG	2 cut(s)	166, 690
Bsh1236I	CGCG	4 cut(s)	195, 435, 578, 1183
BshFI	GGCC	3 cut(s)	520, 883, 1741
BsiHKAI	GWGCWC	1 cut(s)	1258
BsiSI	CCGG	4 cut(s)	301, 514, 948, 1964
BslFI	GGGAC	1 cut(s)	338
BslI	CCNNNNNNNGG	3 cut(s)	493, 577, 1532
BsmAI	GTCTC	2 cut(s)	398, 761
BsmFI	GGGAC	1 cut(s)	338
BsnI	GGCC	3 cut(s)	520, 883, 1741
Bso31I	GGTCTC	1 cut(s)	398
Bsp119I	TTCGAA	1 cut(s)	306
Bsp1286I	GDGCHC	1 cut(s)	1258
Bsp13I	TCCGGA	1 cut(s)	1963
Bsp1407I	TGTACA	1 cut(s)	978
Bsp143I	GATC	5 cut(s)	496, 1335, 1696, 1749, 1884
BspANI	GGCC	3 cut(s)	520, 883, 1741
BspCNI	CTCAG	7 cut(s)	279, 356, 1035, 1114, 1273, 1540, 1627
BspEI	TCCGGA	1 cut(s)	1963
BspFNI	CGCG	4 cut(s)	195, 435, 578, 1183
BspHI	TCATGA	1 cut(s)	984
BspLI	GGNNCC	1 cut(s)	1962
BspMAI	CTGCAG	1 cut(s)	1651
BspMI	ACCTGC	2 cut(s)	377, 1177
BspPI	GGATC	2 cut(s)	504, 1744
BspT104I	TTCGAA	1 cut(s)	306
BspTNI	GGTCTC	1 cut(s)	398
BsrBI	CCGCTC	1 cut(s)	259
BsrDI	GCAATG	2 cut(s)	565, 1614
BsrFI	RCCGGY	1 cut(s)	300
BsrGI	TGTACA	1 cut(s)	978
BsrI	ACTGG	5 cut(s)	161, 399, 522, 1407, 1423
BssAI	RCCGGY	1 cut(s)	300
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	5 cut(s)	496, 1335, 1696, 1749, 1884
BssNAI	GTATAC	1 cut(s)	1768
BssNI	GRCGYC	1 cut(s)	965
Bst1107I	GTATAC	1 cut(s)	1768
Bst2UI	CCWGG	1 cut(s)	1231
Bst4CI	ACNGT	1 cut(s)	488
Bst6I	CTCTTC	2 cut(s)	777, 1701
BstACI	GRCGYC	1 cut(s)	965
BstAUI	TGTACA	1 cut(s)	978
BstBI	TTCGAA	1 cut(s)	306
BstC8I	GCNNGC	2 cut(s)	509, 1959
BstDEI	CTNAG	8 cut(s)	266, 343, 1043, 1122, 1281, 1527, 1635, 1713
BstDSI	CCRYGG	1 cut(s)	238
BstENI	CCTNNNNNAGG	1 cut(s)	1530
BstF5I	GGATG	8 cut(s)	20, 57, 168, 276, 1239, 1411, 1732, 2032
BstFNI	CGCG	4 cut(s)	195, 435, 578, 1183
BstH2I	RGCGCY	1 cut(s)	677
BstHHI	GCGC	4 cut(s)	366, 676, 1183, 1435
BstKTI	GATC	5 cut(s)	499, 1338, 1699, 1752, 1887
BstMAI	GTCTC	2 cut(s)	398, 761
BstMBI	GATC	5 cut(s)	496, 1335, 1696, 1749, 1884
BstMWI	GCNNNNNNNGC	5 cut(s)	240, 297, 508, 517, 618
BstNI	CCWGG	1 cut(s)	1231
BstNSI	RCATGY	2 cut(s)	553, 1821
BstSCI	CCNGG	1 cut(s)	1229
BstSFI	CTRYAG	1 cut(s)	1647
BstUI	CGCG	4 cut(s)	195, 435, 578, 1183
BstV1I	GCAGC	4 cut(s)	282, 683, 1633, 1784
BstX2I	RGATCY	1 cut(s)	1749
BstYI	RGATCY	1 cut(s)	1749
BstZ17I	GTATAC	1 cut(s)	1768
BsuRI	GGCC	3 cut(s)	520, 883, 1741
BtgI	CCRYGG	1 cut(s)	238
BtgZI	GCGATG	3 cut(s)	210, 305, 367
BtsCI	GGATG	8 cut(s)	20, 57, 168, 276, 1239, 1411, 1732, 2032
BtsI	GCAGTG	1 cut(s)	1890
BtsIMutI	CAGTG	3 cut(s)	446, 529, 1890
BveI	ACCTGC	2 cut(s)	377, 1177
Cac8I	GCNNGC	2 cut(s)	509, 1959
CciI	TCATGA	1 cut(s)	984
CfoI	GCGC	4 cut(s)	366, 676, 1183, 1435
Cfr10I	RCCGGY	1 cut(s)	300
Cfr13I	GGNCC	4 cut(s)	159, 519, 1740, 2060
CseI	GACGC	3 cut(s)	340, 797, 954
Csp6I	GTAC	5 cut(s)	607, 979, 1126, 1400, 1656
CviAII	CATG	8 cut(s)	550, 959, 985, 1037, 1627, 1754, 1818, 2066
CviQI	GTAC	5 cut(s)	607, 979, 1126, 1400, 1656
DdeI	CTNAG	8 cut(s)	266, 343, 1043, 1122, 1281, 1527, 1635, 1713
DpnI	GATC	5 cut(s)	498, 1337, 1698, 1751, 1886
DpnII	GATC	5 cut(s)	496, 1335, 1696, 1749, 1884
DraI	TTTAAA	2 cut(s)	1395, 1585
DraIII	CACNNNGTG	1 cut(s)	643
DrdI	GACNNNNNNGTC	1 cut(s)	1850
DriI	GACNNNNNGTC	1 cut(s)	1320
DseDI	GACNNNNNNGTC	1 cut(s)	1850
Eam1104I	CTCTTC	2 cut(s)	777, 1701
Eam1105I	GACNNNNNGTC	1 cut(s)	1320
EarI	CTCTTC	2 cut(s)	777, 1701
EciI	GGCGGA	1 cut(s)	221
Ecl136II	GAGCTC	1 cut(s)	1256
Eco24I	GRGCYC	1 cut(s)	1258
Eco31I	GGTCTC	1 cut(s)	398
Eco47I	GGWCC	2 cut(s)	159, 2060
Eco53kI	GAGCTC	1 cut(s)	1256
Eco57I	CTGAAG	2 cut(s)	470, 1931
EcoICRI	GAGCTC	1 cut(s)	1256
EcoNI	CCTNNNNNAGG	1 cut(s)	1530
EcoRII	CCWGG	1 cut(s)	1229
EcoT38I	GRGCYC	1 cut(s)	1258
FaeI	CATG	8 cut(s)	553, 962, 988, 1040, 1630, 1757, 1821, 2069
FalI	AAGNNNNNCTT	2 cut(s)	1485, 1517
FaqI	GGGAC	1 cut(s)	338
FatI	CATG	8 cut(s)	549, 958, 984, 1036, 1626, 1753, 1817, 2065
FauI	CCCGC	4 cut(s)	194, 264, 417, 717
FauNDI	CATATG	1 cut(s)	1924
FbaI	TGATCA	2 cut(s)	1335, 1696
FblI	GTMKAC	3 cut(s)	201, 1767, 1842
Fnu4HI	GCNGC	8 cut(s)	271, 518, 613, 672, 807, 1184, 1647, 1773
FokI	GGATG	8 cut(s)	7, 44, 155, 263, 1246, 1418, 1739, 2039
FriOI	GRGCYC	1 cut(s)	1258
Fsp4HI	GCNGC	8 cut(s)	271, 518, 613, 672, 807, 1184, 1647, 1773
FspBI	CTAG	3 cut(s)	1142, 1703, 1904
GlaI	GCGC	4 cut(s)	365, 675, 1182, 1434
GluI	GCNGC	8 cut(s)	271, 518, 613, 672, 807, 1184, 1647, 1773
GsuI	CTGGAG	2 cut(s)	280, 1295
HaeII	RGCGCY	1 cut(s)	677
HaeIII	GGCC	3 cut(s)	520, 883, 1741
HapII	CCGG	4 cut(s)	301, 514, 948, 1964
HgaI	GACGC	3 cut(s)	340, 797, 954
HhaI	GCGC	4 cut(s)	366, 676, 1183, 1435
Hin1I	GRCGYC	1 cut(s)	965
Hin1II	CATG	8 cut(s)	553, 962, 988, 1040, 1630, 1757, 1821, 2069
Hin6I	GCGC	4 cut(s)	364, 674, 1181, 1433
HinP1I	GCGC	4 cut(s)	364, 674, 1181, 1433
HincII	GTYRAC	3 cut(s)	202, 1174, 1357
HindII	GTYRAC	3 cut(s)	202, 1174, 1357
HindIII	AAGCTT	1 cut(s)	1389
HpaII	CCGG	4 cut(s)	301, 514, 948, 1964
HphI	GGTGA	6 cut(s)	31, 58, 84, 92, 791, 1330
Hpy99I	CGWCG	3 cut(s)	970, 1021, 1172
HpyAV	CCTTC	8 cut(s)	769, 836, 945, 1088, 1142, 1204, 1459, 1593
HpyCH4III	ACNGT	1 cut(s)	488
HpyCH4IV	ACGT	4 cut(s)	375, 419, 1016, 1170
HpyCH4V	TGCA	9 cut(s)	183, 372, 635, 671, 872, 1368, 1565, 1649, 2047
HpyF10VI	GCNNNNNNNGC	5 cut(s)	240, 297, 508, 517, 618
HpyF3I	CTNAG	8 cut(s)	266, 343, 1043, 1122, 1281, 1527, 1635, 1713
HpySE526I	ACGT	4 cut(s)	375, 419, 1016, 1170
Hsp92I	GRCGYC	1 cut(s)	965
Hsp92II	CATG	8 cut(s)	553, 962, 988, 1040, 1630, 1757, 1821, 2069
HspAI	GCGC	4 cut(s)	364, 674, 1181, 1433
Kpn2I	TCCGGA	1 cut(s)	1963
Ksp22I	TGATCA	2 cut(s)	1335, 1696
Kzo9I	GATC	5 cut(s)	496, 1335, 1696, 1749, 1884
LmnI	GCTCC	3 cut(s)	516, 1314, 1966
Lsp1109I	GCAGC	4 cut(s)	282, 683, 1633, 1784
LweI	GCATC	3 cut(s)	282, 964, 1296
MaeI	CTAG	3 cut(s)	1142, 1703, 1904
MaeII	ACGT	4 cut(s)	375, 419, 1016, 1170
MaeIII	GTNAC	7 cut(s)	1109, 1444, 1552, 1630, 1871, 1972, 1995
MalI	GATC	5 cut(s)	498, 1337, 1698, 1751, 1886
MbiI	CCGCTC	1 cut(s)	259
MboI	GATC	5 cut(s)	496, 1335, 1696, 1749, 1884
MflI	RGATCY	1 cut(s)	1749
MhlI	GDGCHC	1 cut(s)	1258
MlyI	GAGTC	6 cut(s)	287, 335, 451, 1172, 1700, 1838
MmeI	TCCRAC	2 cut(s)	1068, 1191
MroI	TCCGGA	1 cut(s)	1963
MroXI	GAANNNNTTC	1 cut(s)	1865
MseI	TTAA	9 cut(s)	477, 600, 1205, 1269, 1394, 1464, 1475, 1584, 1590
MslI	CAYNNNNRTG	2 cut(s)	195, 554
MspI	CCGG	4 cut(s)	301, 514, 948, 1964
MspR9I	CCNGG	1 cut(s)	1231
MssI	GTTTAAAC	1 cut(s)	1585
MvaI	CCWGG	1 cut(s)	1231
MvnI	CGCG	4 cut(s)	195, 435, 578, 1183
MwoI	GCNNNNNNNGC	5 cut(s)	240, 297, 508, 517, 618
NdeI	CATATG	1 cut(s)	1924
NdeII	GATC	5 cut(s)	496, 1335, 1696, 1749, 1884
NlaIII	CATG	8 cut(s)	553, 962, 988, 1040, 1630, 1757, 1821, 2069
NlaIV	GGNNCC	1 cut(s)	1962
NmeAIII	GCCGAG	1 cut(s)	367
NmuCI	GTSAC	2 cut(s)	1444, 1552
NspI	RCATGY	2 cut(s)	553, 1821
NspV	TTCGAA	1 cut(s)	306
PagI	TCATGA	1 cut(s)	984
PaqCI	CACCTGC	1 cut(s)	377
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PdmI	GAANNNNTTC	1 cut(s)	1865
PfeI	GAWTC	6 cut(s)	398, 703, 827, 932, 1967, 1984
PflFI	GACNNNGTC	1 cut(s)	350
PkrI	GCNGC	8 cut(s)	272, 519, 614, 673, 808, 1185, 1648, 1774
PleI	GAGTC	6 cut(s)	287, 335, 450, 1171, 1699, 1838
PmeI	GTTTAAAC	1 cut(s)	1585
PpsI	GAGTC	6 cut(s)	287, 335, 450, 1171, 1699, 1838
PshBI	ATTAAT	1 cut(s)	1464
PsiI	TTATAA	1 cut(s)	1673
Psp124BI	GAGCTC	1 cut(s)	1258
Psp6I	CCWGG	1 cut(s)	1229
PspGI	CCWGG	1 cut(s)	1229
PspN4I	GGNNCC	1 cut(s)	1962
PspPI	GGNCC	4 cut(s)	159, 519, 1740, 2060
PstI	CTGCAG	1 cut(s)	1651
PsuI	RGATCY	1 cut(s)	1749
PsyI	GACNNNGTC	1 cut(s)	350
RsaI	GTAC	5 cut(s)	608, 980, 1127, 1401, 1657
RsaNI	GTAC	5 cut(s)	607, 979, 1126, 1400, 1656
RseI	CAYNNNNRTG	2 cut(s)	195, 554
SacI	GAGCTC	1 cut(s)	1258
SalI	GTCGAC	1 cut(s)	200
SaqAI	TTAA	9 cut(s)	477, 600, 1205, 1269, 1394, 1464, 1475, 1584, 1590
SatI	GCNGC	8 cut(s)	271, 518, 613, 672, 807, 1184, 1647, 1773
Sau3AI	GATC	5 cut(s)	496, 1335, 1696, 1749, 1884
Sau96I	GGNCC	4 cut(s)	159, 519, 1740, 2060
SchI	GAGTC	6 cut(s)	287, 335, 451, 1172, 1700, 1838
ScrFI	CCNGG	1 cut(s)	1231
SduI	GDGCHC	1 cut(s)	1258
SfaNI	GCATC	3 cut(s)	282, 964, 1296
SfcI	CTRYAG	1 cut(s)	1647
SfuI	TTCGAA	1 cut(s)	306
SinI	GGWCC	2 cut(s)	159, 2060
SmiMI	CAYNNNNRTG	2 cut(s)	195, 554
SmlI	CTYRAG	1 cut(s)	2008
SmoI	CTYRAG	1 cut(s)	2008
SspMI	CTAG	3 cut(s)	1142, 1703, 1904
SstI	GAGCTC	1 cut(s)	1258
StyD4I	CCNGG	1 cut(s)	1229
TaaI	ACNGT	1 cut(s)	488
TaiI	ACGT	4 cut(s)	378, 422, 1019, 1173
TaqII	GACCGA	1 cut(s)	1331
TatI	WGTACW	2 cut(s)	978, 1125
TauI	GCSGC	4 cut(s)	520, 615, 809, 1186
TfiI	GAWTC	6 cut(s)	398, 703, 827, 932, 1967, 1984
Tru1I	TTAA	9 cut(s)	477, 600, 1205, 1269, 1394, 1464, 1475, 1584, 1590
Tru9I	TTAA	9 cut(s)	477, 600, 1205, 1269, 1394, 1464, 1475, 1584, 1590
TscAI	CASTG	3 cut(s)	453, 529, 1897
TseFI	GTSAC	2 cut(s)	1444, 1552
TseI	GCWGC	4 cut(s)	270, 671, 1646, 1772
Tsp45I	GTSAC	2 cut(s)	1444, 1552
TspDTI	ATGAA	3 cut(s)	666, 788, 1941
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	3 cut(s)	453, 529, 1897
Tth111I	GACNNNGTC	1 cut(s)	350
VpaK11BI	GGWCC	2 cut(s)	159, 2060
VspI	ATTAAT	1 cut(s)	1464
XagI	CCTNNNNNAGG	1 cut(s)	1530
XapI	RAATTY	3 cut(s)	817, 1424, 1804
XceI	RCATGY	2 cut(s)	553, 1821
XmiI	GTMKAC	3 cut(s)	201, 1767, 1842
XmnI	GAANNNNTTC	1 cut(s)	1865
XspI	CTAG	3 cut(s)	1142, 1703, 1904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.