Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000343.1

Orthogroup ID

OG0006735

Physical Location & Seq

Genomic Coordinates Reverse (-)

138274 .. 140571

Gene Structure 2298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000343.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

atgtccatcaaaacaaaggagtgctttagtacttcatgtaagattcaaccagtggtggagccagccctccacctccgcctctgtggttacggcaccgacccgctcaacctcaacaacgtcatccatgctctctgcgactccaactgcctcaacgaagcccaccaccgctttgcccactccattgactcagattgcgtccctgaccagcgcacctgcaacgtcatcatcgctaggctactcgattttcaaaccccacacagcacgttgggtgttcttcacgttttgagtgcactgaagcctgattttgttgcctctttggttcattacaacagtctgatagatcagctctgctcgctccgtggcccaatgaggctgatagagtgttgtttcatgaatggttattgcgaaattagcgagttgggtaatgcacagaagagagaaacccgaccggagcgacgccgtccggccaccgatcgacgattcacgaccaccgatatcttcctctcgtcgtcgccgtcacgcctgtggtctttgatcgcccatgcacagaacgaggagggagaatcgacggtgagagtgtctgactgttccggcgaattccagcgatttccggccaccttctgggccgcattcgctacggctccgtcgcggttcctcgaccctggcagctttccgagctctttccgagctctttccggcttcgttctggcttggttacatctatatgaggaggctgaccacaattggagtaggaagcttcaaagattactgggttttggacgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

261

Amino Acids

29.45

Weight (kDa)

7.14

Isoelectric Point (pI)

49.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18020
fragaria_vesca	FvH4_5g17250
malus_domestica	MD06G1231100.v1.1
prunus_persica	Prupe.5G232400_v2.0.a1
pyrus_communis	pycom06g20240
rosa_chinensis	RchiOBHm_Chr7g0178541
rosa_laevigata	RLG00000005439 RLG00000010173
rosa_multiflora	Rmu_sc0000775.1_g000015 Rmu_sc0000961.1_g000015 Rmu_sc0002421.1_g000004 Rmu_sc0003637.1_g000006 Rmu_sc0011483.1_g000001 Rmu_sc0016060.1_g000005 Rmu_ssc0000343.1_g000033
rosa_roxburghii	Rroxscaffold_3G00274830 Rroxscaffold_5G00333820
rosa_rugosa	Rorug06G0417900
rosa_samantha	Rh3CG367500 Rh4AG426400 Rh4DG434700 Rh7AG016400 Rh7BG015900 Rh7CG016600 Rh7DG016500
rosa_wichuraiana	Rw7G001300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	221
Acc36I	ACCTGC	1 cut(s)	221
AccB1I	GGYRCC	1 cut(s)	92
AccB7I	CCANNNNNTGG	1 cut(s)	621
AccBSI	CCGCTC	1 cut(s)	103
AccII	CGCG	1 cut(s)	649
AciI	CCGC	5 cut(s)	76, 101, 166, 627, 649
AcoI	YGGCCR	2 cut(s)	465, 612
AcsI	RAATTY	1 cut(s)	596
AcuI	CTGAAG	1 cut(s)	314
AcyI	GRCGYC	1 cut(s)	457
AfaI	GTAC	1 cut(s)	31
AfiI	CCNNNNNNNGG	1 cut(s)	621
AgsI	TTSAA	3 cut(s)	47, 248, 761
AjnI	CCWGG	1 cut(s)	661
AleI	CACNNNNGTG	1 cut(s)	523
AluBI	AGCT	5 cut(s)	346, 669, 678, 689, 757
AluI	AGCT	5 cut(s)	346, 669, 678, 689, 757
Alw21I	GWGCWC	3 cut(s)	292, 680, 691
Alw44I	GTGCAC	1 cut(s)	288
AoxI	GGCC	4 cut(s)	361, 465, 612, 624
ApaLI	GTGCAC	1 cut(s)	288
ApeKI	GCWGC	1 cut(s)	666
ApoI	RAATTY	1 cut(s)	596
AspLEI	GCGC	1 cut(s)	210
AspS9I	GGNCC	2 cut(s)	362, 624
AsuHPI	GGTGA	1 cut(s)	583
BaeGI	GKGCMC	1 cut(s)	292
BanI	GGYRCC	1 cut(s)	92
BanII	GRGCYC	2 cut(s)	680, 691
Bbv12I	GWGCWC	3 cut(s)	292, 680, 691
BbvI	GCAGC	1 cut(s)	678
BccI	CCATC	1 cut(s)	14
BceAI	ACGGC	4 cut(s)	106, 444, 499, 654
BciT130I	CCWGG	1 cut(s)	663
BfaI	CTAG	1 cut(s)	231
BfuAI	ACCTGC	1 cut(s)	221
BisI	GCNGC	2 cut(s)	627, 667
BlsI	GCNGC	2 cut(s)	628, 668
BmcAI	AGTACT	1 cut(s)	31
Bme1390I	CCNGG	1 cut(s)	663
BmgT120I	GGNCC	2 cut(s)	362, 624
BmiI	GGNNCC	4 cut(s)	60, 94, 642, 653
BmrFI	CCNGG	1 cut(s)	663
BmrI	ACTGGG	1 cut(s)	779
BmuI	ACTGGG	1 cut(s)	779
BsaHI	GRCGYC	1 cut(s)	457
BsaJI	CCNNGG	2 cut(s)	358, 661
BsaWI	WCCGGW	1 cut(s)	448
Bsc4I	CCNNNNNNNGG	1 cut(s)	621
Bse1I	ACTGG	2 cut(s)	50, 774
BseBI	CCWGG	1 cut(s)	663
BseDI	CCNNGG	2 cut(s)	358, 661
BseGI	GGATG	1 cut(s)	120
BseLI	CCNNNNNNNGG	1 cut(s)	621
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	2 cut(s)	50, 774
BseRI	GAGGAG	2 cut(s)	569, 743
BseSI	GKGCMC	1 cut(s)	292
BseXI	GCAGC	1 cut(s)	678
Bsh1236I	CGCG	1 cut(s)	649
Bsh1285I	CGRYCG	2 cut(s)	449, 475
BshFI	GGCC	4 cut(s)	363, 467, 614, 626
BshNI	GGYRCC	1 cut(s)	92
BsiEI	CGRYCG	2 cut(s)	449, 475
BsiHKAI	GWGCWC	3 cut(s)	292, 680, 691
BsiSI	CCGG	5 cut(s)	449, 464, 591, 611, 696
BslFI	GGGAC	1 cut(s)	182
BslI	CCNNNNNNNGG	1 cut(s)	621
BsmFI	GGGAC	1 cut(s)	182
BsmI	GAATGC	1 cut(s)	629
BsnI	GGCC	4 cut(s)	363, 467, 614, 626
Bsp1286I	GDGCHC	3 cut(s)	292, 680, 691
Bsp143I	GATC	3 cut(s)	340, 472, 534
BspACI	CCGC	5 cut(s)	76, 101, 166, 627, 649
BspANI	GGCC	4 cut(s)	363, 467, 614, 626
BspCNI	CTCAG	1 cut(s)	200
BspFNI	CGCG	1 cut(s)	649
BspHI	TCATGA	1 cut(s)	390
BspLI	GGNNCC	4 cut(s)	60, 94, 642, 653
BspMI	ACCTGC	1 cut(s)	221
BspT107I	GGYRCC	1 cut(s)	92
BsrBI	CCGCTC	1 cut(s)	103
BsrI	ACTGG	2 cut(s)	50, 774
BssECI	CCNNGG	2 cut(s)	358, 661
BssMI	GATC	3 cut(s)	340, 472, 534
BssNI	GRCGYC	1 cut(s)	457
Bst2UI	CCWGG	1 cut(s)	663
Bst4CI	ACNGT	3 cut(s)	332, 571, 587
Bst6I	CTCTTC	1 cut(s)	428
BstACI	GRCGYC	1 cut(s)	457
BstC8I	GCNNGC	2 cut(s)	63, 353
BstDEI	CTNAG	1 cut(s)	187
BstDSI	CCRYGG	1 cut(s)	358
BstF5I	GGATG	1 cut(s)	120
BstFNI	CGCG	1 cut(s)	649
BstHHI	GCGC	1 cut(s)	210
BstKTI	GATC	3 cut(s)	343, 475, 537
BstMBI	GATC	3 cut(s)	340, 472, 534
BstMCI	CGRYCG	2 cut(s)	449, 475
BstMWI	GCNNNNNNNGC	4 cut(s)	352, 411, 632, 675
BstNI	CCWGG	1 cut(s)	663
BstSCI	CCNGG	1 cut(s)	661
BstSLI	GKGCMC	1 cut(s)	292
BstUI	CGCG	1 cut(s)	649
BstV1I	GCAGC	1 cut(s)	678
BsuRI	GGCC	4 cut(s)	363, 467, 614, 626
BtgI	CCRYGG	1 cut(s)	358
BtgZI	GCGATG	1 cut(s)	211
BtsCI	GGATG	1 cut(s)	120
BtsIMutI	CAGTG	2 cut(s)	57, 290
BveI	ACCTGC	1 cut(s)	221
Cac8I	GCNNGC	2 cut(s)	63, 353
CciI	TCATGA	1 cut(s)	390
CfoI	GCGC	1 cut(s)	210
Cfr13I	GGNCC	2 cut(s)	362, 624
CseI	GACGC	2 cut(s)	184, 465
Csp6I	GTAC	1 cut(s)	30
CviAII	CATG	4 cut(s)	36, 125, 391, 542
CviQI	GTAC	1 cut(s)	30
DdeI	CTNAG	1 cut(s)	187
DpnI	GATC	3 cut(s)	342, 474, 536
DpnII	GATC	3 cut(s)	340, 472, 534
EaeI	YGGCCR	2 cut(s)	465, 612
Eam1104I	CTCTTC	1 cut(s)	428
EarI	CTCTTC	1 cut(s)	428
EciI	GGCGGA	1 cut(s)	65
Ecl136II	GAGCTC	2 cut(s)	678, 689
Eco24I	GRGCYC	2 cut(s)	680, 691
Eco32I	GATATC	1 cut(s)	496
Eco53kI	GAGCTC	2 cut(s)	678, 689
Eco57I	CTGAAG	1 cut(s)	314
EcoICRI	GAGCTC	2 cut(s)	678, 689
EcoRI	GAATTC	1 cut(s)	596
EcoRII	CCWGG	1 cut(s)	661
EcoRV	GATATC	1 cut(s)	496
EcoT38I	GRGCYC	2 cut(s)	680, 691
FaeI	CATG	4 cut(s)	39, 128, 394, 545
FaiI	YATR	6 cut(s)	37, 126, 392, 543, 724, 726
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	4 cut(s)	35, 124, 390, 541
FauI	CCCGC	1 cut(s)	108
Fnu4HI	GCNGC	2 cut(s)	627, 667
FokI	GGATG	1 cut(s)	107
FriOI	GRGCYC	2 cut(s)	680, 691
Fsp4HI	GCNGC	2 cut(s)	627, 667
FspBI	CTAG	1 cut(s)	231
GlaI	GCGC	1 cut(s)	209
GluI	GCNGC	2 cut(s)	627, 667
HaeIII	GGCC	4 cut(s)	363, 467, 614, 626
HapII	CCGG	5 cut(s)	449, 464, 591, 611, 696
HgaI	GACGC	2 cut(s)	184, 465
HhaI	GCGC	1 cut(s)	210
Hin1I	GRCGYC	1 cut(s)	457
Hin1II	CATG	4 cut(s)	39, 128, 394, 545
Hin6I	GCGC	1 cut(s)	208
HinP1I	GCGC	1 cut(s)	208
HindIII	AAGCTT	1 cut(s)	755
HinfI	GANTC	5 cut(s)	43, 137, 185, 480, 563
HpaII	CCGG	5 cut(s)	449, 464, 591, 611, 696
HphI	GGTGA	1 cut(s)	583
Hpy166II	GTNNAC	1 cut(s)	290
Hpy188I	TCNGA	5 cut(s)	190, 336, 583, 675, 686
Hpy188III	TCNNGA	2 cut(s)	391, 484
Hpy8I	GTNNAC	1 cut(s)	290
Hpy99I	CGWCG	6 cut(s)	459, 480, 511, 514, 571, 649
HpyAV	CCTTC	1 cut(s)	628
HpyCH4III	ACNGT	3 cut(s)	332, 571, 587
HpyCH4IV	ACGT	5 cut(s)	117, 219, 263, 279, 781
HpyCH4V	TGCA	4 cut(s)	216, 290, 428, 545
HpyF10VI	GCNNNNNNNGC	4 cut(s)	352, 411, 632, 675
HpyF3I	CTNAG	1 cut(s)	187
HpySE526I	ACGT	5 cut(s)	117, 219, 263, 279, 781
Hsp92I	GRCGYC	1 cut(s)	457
Hsp92II	CATG	4 cut(s)	39, 128, 394, 545
HspAI	GCGC	1 cut(s)	208
Kzo9I	GATC	3 cut(s)	340, 472, 534
LmnI	GCTCC	4 cut(s)	58, 360, 451, 646
Lsp1109I	GCAGC	1 cut(s)	678
MaeI	CTAG	1 cut(s)	231
MaeII	ACGT	5 cut(s)	117, 219, 263, 279, 781
MaeIII	GTNAC	3 cut(s)	86, 516, 714
MalI	GATC	3 cut(s)	342, 474, 536
MbiI	CCGCTC	1 cut(s)	103
MboI	GATC	3 cut(s)	340, 472, 534
MboII	GAAGA	3 cut(s)	266, 445, 490
MfeI	CAATTG	1 cut(s)	742
MhlI	GDGCHC	3 cut(s)	292, 680, 691
MluCI	AATT	3 cut(s)	408, 596, 742
MlyI	GAGTC	2 cut(s)	131, 179
MmeI	TCCRAC	1 cut(s)	165
MslI	CAYNNNNRTG	2 cut(s)	523, 723
MspI	CCGG	5 cut(s)	449, 464, 591, 611, 696
MspR9I	CCNGG	1 cut(s)	663
MunI	CAATTG	1 cut(s)	742
Mva1269I	GAATGC	1 cut(s)	629
MvaI	CCWGG	1 cut(s)	663
MvnI	CGCG	1 cut(s)	649
MwoI	GCNNNNNNNGC	4 cut(s)	352, 411, 632, 675
NdeII	GATC	3 cut(s)	340, 472, 534
NlaIII	CATG	4 cut(s)	39, 128, 394, 545
NlaIV	GGNNCC	4 cut(s)	60, 94, 642, 653
NmuCI	GTSAC	1 cut(s)	516
OliI	CACNNNNGTG	1 cut(s)	523
PagI	TCATGA	1 cut(s)	390
PaqCI	CACCTGC	1 cut(s)	221
PcsI	WCGNNNNNNNCGW	1 cut(s)	512
PctI	GAATGC	1 cut(s)	629
PfeI	GAWTC	3 cut(s)	43, 480, 563
PflFI	GACNNNGTC	1 cut(s)	459
PflMI	CCANNNNNTGG	1 cut(s)	621
PkrI	GCNGC	2 cut(s)	628, 668
Ple19I	CGATCG	1 cut(s)	475
PleI	GAGTC	2 cut(s)	131, 179
PpsI	GAGTC	2 cut(s)	131, 179
Psp124BI	GAGCTC	2 cut(s)	680, 691
Psp6I	CCWGG	1 cut(s)	661
PspGI	CCWGG	1 cut(s)	661
PspN4I	GGNNCC	4 cut(s)	60, 94, 642, 653
PspPI	GGNCC	2 cut(s)	362, 624
PsyI	GACNNNGTC	1 cut(s)	459
PvuI	CGATCG	1 cut(s)	475
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
RseI	CAYNNNNRTG	2 cut(s)	523, 723
SacI	GAGCTC	2 cut(s)	680, 691
SatI	GCNGC	2 cut(s)	627, 667
Sau3AI	GATC	3 cut(s)	340, 472, 534
Sau96I	GGNCC	2 cut(s)	362, 624
ScaI	AGTACT	1 cut(s)	31
SchI	GAGTC	2 cut(s)	131, 179
ScrFI	CCNGG	1 cut(s)	663
SduI	GDGCHC	3 cut(s)	292, 680, 691
SmiMI	CAYNNNNRTG	2 cut(s)	523, 723
Sse9I	AATT	3 cut(s)	408, 596, 742
SsiI	CCGC	5 cut(s)	76, 101, 166, 627, 649
SspMI	CTAG	1 cut(s)	231
SstI	GAGCTC	2 cut(s)	680, 691
StyD4I	CCNGG	1 cut(s)	661
TaaI	ACNGT	3 cut(s)	332, 571, 587
TaiI	ACGT	5 cut(s)	120, 222, 266, 282, 784
TaqI	TCGA	4 cut(s)	240, 475, 566, 657
TasI	AATT	3 cut(s)	408, 596, 742
TatI	WGTACW	1 cut(s)	29
TauI	GCSGC	1 cut(s)	629
TfiI	GAWTC	3 cut(s)	43, 480, 563
TscAI	CASTG	2 cut(s)	57, 297
TseFI	GTSAC	1 cut(s)	516
TseI	GCWGC	1 cut(s)	666
Tsp45I	GTSAC	1 cut(s)	516
TspDTI	ATGAA	4 cut(s)	24, 311, 379, 407
TspGWI	ACGGA	2 cut(s)	347, 633
TspRI	CASTG	2 cut(s)	57, 297
Tth111I	GACNNNGTC	1 cut(s)	459
Van91I	CCANNNNNTGG	1 cut(s)	621
VneI	GTGCAC	1 cut(s)	288
XapI	RAATTY	1 cut(s)	596
XspI	CTAG	1 cut(s)	231
ZrmI	AGTACT	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.