Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006735

Physical Location & Seq

Genomic Coordinates Reverse (-)

1181633 .. 1182193

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00333820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGAGGCACCAAAACCAGACTGCGGCCTCGCTCGGCTACCGACCGTCGCACCGGACCTCCGAGGCTTCGGGGACACCGACCTGTTGAGATACACTTACCTTCACGCTCTCTGCCACTCCAACTACCTCGAAGATGCCCACCACCGCTTTGCCCACTCCACTGACTCAGATTGCGCCCCTGACCAGCGCACCTGCAACGTCATCATCGCTAGGCTACTTGATTCTCAAACCTCACACAGCACGTTGGGTGTTCTTCGCGTTTTGAGTGCACTGAAGCATGATTTTGTTGCCTCTTTGGTTAATTACAACCGTTTGATGGATGAGCTCTGCTCGCCCCGCGGCCCAGTAAGGCTGATAGAATGTTGTTTGATGAATGGTTATTGCAAAATTAGCGAATTGGGTAATGCACAGAAGGTGTTTGATGAAATGTGTGAGAGGGGTGTAGCGCCTAATTCGATCGCTTATAGTGTGTTGGTTTGTGGCGTTCATCGGAAGCGGGATATTGGGGGTGCTATGGAAGTGATGGAAAAATTGTTTGAGAGAATGAAATGTGAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

186

Amino Acids

20.8

Weight (kDa)

6.43

Isoelectric Point (pI)

27.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	122 - 162	1.5e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18020
fragaria_vesca	FvH4_5g17250
malus_domestica	MD06G1231100.v1.1
prunus_persica	Prupe.5G232400_v2.0.a1
pyrus_communis	pycom06g20240
rosa_chinensis	RchiOBHm_Chr7g0178541
rosa_laevigata	RLG00000005439 RLG00000010173
rosa_multiflora	Rmu_sc0000775.1_g000015 Rmu_sc0000961.1_g000015 Rmu_sc0002421.1_g000004 Rmu_sc0003637.1_g000006 Rmu_sc0011483.1_g000001 Rmu_sc0016060.1_g000005 Rmu_ssc0000343.1_g000033
rosa_roxburghii	Rroxscaffold_3G00274830 Rroxscaffold_5G00333820
rosa_rugosa	Rorug06G0417900
rosa_samantha	Rh3CG367500 Rh4AG426400 Rh4DG434700 Rh7AG016400 Rh7BG015900 Rh7CG016600 Rh7DG016500
rosa_wichuraiana	Rw7G001300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	200
Acc36I	ACCTGC	1 cut(s)	200
AccB1I	GGYRCC	1 cut(s)	7
AccII	CGCG	2 cut(s)	258, 339
AciI	CCGC	5 cut(s)	24, 145, 337, 339, 496
AcuI	CTGAAG	1 cut(s)	293
AfiI	CCNNNNNNNGG	2 cut(s)	23, 316
AluBI	AGCT	1 cut(s)	325
AluI	AGCT	1 cut(s)	325
Alw21I	GWGCWC	2 cut(s)	271, 327
Alw44I	GTGCAC	1 cut(s)	267
AoxI	GGCC	2 cut(s)	25, 340
ApaLI	GTGCAC	1 cut(s)	267
AspLEI	GCGC	3 cut(s)	176, 189, 448
AspS9I	GGNCC	2 cut(s)	55, 341
AvaII	GGWCC	1 cut(s)	55
BaeGI	GKGCMC	1 cut(s)	271
BanI	GGYRCC	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	327
Bbv12I	GWGCWC	2 cut(s)	271, 327
BccI	CCATC	2 cut(s)	310, 517
BfaI	CTAG	1 cut(s)	210
BfoI	RGCGCY	1 cut(s)	449
BfuAI	ACCTGC	1 cut(s)	200
BisI	GCNGC	2 cut(s)	25, 340
BlsI	GCNGC	2 cut(s)	26, 341
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	2 cut(s)	55, 341
BmiI	GGNNCC	1 cut(s)	9
BmrI	ACTGGG	1 cut(s)	338
BmsI	GCATC	1 cut(s)	124
BmuI	ACTGGG	1 cut(s)	338
BplI	GAGNNNNNCTC	2 cut(s)	314, 346
BsaJI	CCNNGG	2 cut(s)	61, 337
BsaWI	WCCGGW	1 cut(s)	52
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 316
Bse1I	ACTGG	1 cut(s)	344
BseDI	CCNNGG	2 cut(s)	61, 337
BseGI	GGATG	1 cut(s)	325
BseLI	CCNNNNNNNGG	2 cut(s)	23, 316
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	1 cut(s)	344
BseSI	GKGCMC	1 cut(s)	271
Bsh1236I	CGCG	2 cut(s)	258, 339
Bsh1285I	CGRYCG	2 cut(s)	45, 459
BshFI	GGCC	2 cut(s)	27, 342
BshNI	GGYRCC	1 cut(s)	7
BsiEI	CGRYCG	2 cut(s)	45, 459
BsiHKAI	GWGCWC	2 cut(s)	271, 327
BsiSI	CCGG	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	2 cut(s)	23, 316
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	2 cut(s)	27, 342
Bsp1286I	GDGCHC	2 cut(s)	271, 327
Bsp143I	GATC	1 cut(s)	456
BspACI	CCGC	5 cut(s)	24, 145, 337, 339, 496
BspANI	GGCC	2 cut(s)	27, 342
BspCNI	CTCAG	1 cut(s)	179
BspFNI	CGCG	2 cut(s)	258, 339
BspLI	GGNNCC	1 cut(s)	9
BspMI	ACCTGC	1 cut(s)	200
BspT107I	GGYRCC	1 cut(s)	7
BsrI	ACTGG	1 cut(s)	344
BssECI	CCNNGG	2 cut(s)	61, 337
BssMI	GATC	1 cut(s)	456
Bst4CI	ACNGT	2 cut(s)	46, 311
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	1 cut(s)	166
BstDSI	CCRYGG	1 cut(s)	337
BstF5I	GGATG	1 cut(s)	325
BstFNI	CGCG	2 cut(s)	258, 339
BstH2I	RGCGCY	1 cut(s)	449
BstHHI	GCGC	3 cut(s)	176, 189, 448
BstKTI	GATC	1 cut(s)	459
BstMBI	GATC	1 cut(s)	456
BstMCI	CGRYCG	2 cut(s)	45, 459
BstMWI	GCNNNNNNNGC	3 cut(s)	331, 336, 390
BstSLI	GKGCMC	1 cut(s)	271
BstUI	CGCG	2 cut(s)	258, 339
BsuRI	GGCC	2 cut(s)	27, 342
BtgI	CCRYGG	1 cut(s)	337
BtgZI	GCGATG	1 cut(s)	190
BtsCI	GGATG	1 cut(s)	325
BtsIMutI	CAGTG	2 cut(s)	159, 269
BveI	ACCTGC	1 cut(s)	200
Cac8I	GCNNGC	1 cut(s)	332
CfoI	GCGC	3 cut(s)	176, 189, 448
Cfr13I	GGNCC	2 cut(s)	55, 341
Cfr42I	CCGCGG	1 cut(s)	340
CviAII	CATG	1 cut(s)	278
CviJI	RGCY	7 cut(s)	27, 37, 66, 214, 325, 342, 352
CviKI_1	RGCY	7 cut(s)	27, 37, 66, 214, 325, 342, 352
DdeI	CTNAG	1 cut(s)	166
DpnI	GATC	1 cut(s)	458
DpnII	GATC	1 cut(s)	456
Ecl136II	GAGCTC	1 cut(s)	325
Eco24I	GRGCYC	1 cut(s)	327
Eco47I	GGWCC	1 cut(s)	55
Eco53kI	GAGCTC	1 cut(s)	325
Eco57I	CTGAAG	1 cut(s)	293
EcoICRI	GAGCTC	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	327
FaeI	CATG	1 cut(s)	281
FaiI	YATR	3 cut(s)	279, 465, 515
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	1 cut(s)	277
FauI	CCCGC	2 cut(s)	344, 489
Fnu4HI	GCNGC	2 cut(s)	25, 340
FokI	GGATG	1 cut(s)	332
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	2 cut(s)	25, 340
FspBI	CTAG	1 cut(s)	210
GlaI	GCGC	3 cut(s)	175, 188, 447
GluI	GCNGC	2 cut(s)	25, 340
HaeII	RGCGCY	1 cut(s)	449
HaeIII	GGCC	2 cut(s)	27, 342
HapII	CCGG	1 cut(s)	53
HhaI	GCGC	3 cut(s)	176, 189, 448
Hin1II	CATG	1 cut(s)	281
Hin6I	GCGC	3 cut(s)	174, 187, 446
HinP1I	GCGC	3 cut(s)	174, 187, 446
HinfI	GANTC	2 cut(s)	164, 221
HpaII	CCGG	1 cut(s)	53
Hpy166II	GTNNAC	1 cut(s)	269
Hpy188I	TCNGA	3 cut(s)	62, 169, 492
Hpy8I	GTNNAC	1 cut(s)	269
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	2 cut(s)	110, 406
HpyCH4III	ACNGT	2 cut(s)	46, 311
HpyCH4IV	ACGT	2 cut(s)	198, 242
HpyCH4V	TGCA	4 cut(s)	195, 269, 384, 407
HpyF10VI	GCNNNNNNNGC	3 cut(s)	331, 336, 390
HpyF3I	CTNAG	1 cut(s)	166
HpySE526I	ACGT	2 cut(s)	198, 242
Hsp92II	CATG	1 cut(s)	281
HspAI	GCGC	3 cut(s)	174, 187, 446
KspI	CCGCGG	1 cut(s)	340
Kzo9I	GATC	1 cut(s)	456
LpnPI	CCDG	7 cut(s)	30, 66, 95, 192, 197, 205, 357
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	1 cut(s)	210
MaeII	ACGT	2 cut(s)	198, 242
MalI	GATC	1 cut(s)	458
MboI	GATC	1 cut(s)	456
MboII	GAAGA	2 cut(s)	143, 245
MhlI	GDGCHC	2 cut(s)	271, 327
MluCI	AATT	5 cut(s)	301, 387, 395, 451, 530
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	7 cut(s)	38, 56, 68, 137, 241, 301, 429
MseI	TTAA	1 cut(s)	300
MspA1I	CMGCKG	1 cut(s)	339
MspI	CCGG	1 cut(s)	53
MvnI	CGCG	2 cut(s)	258, 339
MwoI	GCNNNNNNNGC	3 cut(s)	331, 336, 390
NdeII	GATC	1 cut(s)	456
NlaIII	CATG	1 cut(s)	281
NlaIV	GGNNCC	1 cut(s)	9
NmeAIII	GCCGAG	1 cut(s)	13
PaqCI	CACCTGC	1 cut(s)	200
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	221
PkrI	GCNGC	2 cut(s)	26, 341
Ple19I	CGATCG	1 cut(s)	459
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
Psp124BI	GAGCTC	1 cut(s)	327
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	2 cut(s)	55, 341
PvuI	CGATCG	1 cut(s)	459
SacI	GAGCTC	1 cut(s)	327
SacII	CCGCGG	1 cut(s)	340
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	2 cut(s)	25, 340
Sau3AI	GATC	1 cut(s)	456
Sau96I	GGNCC	2 cut(s)	55, 341
SchI	GAGTC	1 cut(s)	158
SduI	GDGCHC	2 cut(s)	271, 327
SfaNI	GCATC	1 cut(s)	124
Sfr303I	CCGCGG	1 cut(s)	340
SgrBI	CCGCGG	1 cut(s)	340
SinI	GGWCC	1 cut(s)	55
Sse9I	AATT	5 cut(s)	301, 387, 395, 451, 530
SsiI	CCGC	5 cut(s)	24, 145, 337, 339, 496
SspMI	CTAG	1 cut(s)	210
SstI	GAGCTC	1 cut(s)	327
TaaI	ACNGT	2 cut(s)	46, 311
TaiI	ACGT	2 cut(s)	201, 245
TaqI	TCGA	2 cut(s)	129, 455
TasI	AATT	5 cut(s)	301, 387, 395, 451, 530
TauI	GCSGC	2 cut(s)	27, 342
TfiI	GAWTC	1 cut(s)	221
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	2 cut(s)	166, 276
TspDTI	ATGAA	4 cut(s)	386, 438, 476, 560
TspRI	CASTG	2 cut(s)	166, 276
VneI	GTGCAC	1 cut(s)	267
VpaK11BI	GGWCC	1 cut(s)	55
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.