Rh3CG367500

Rhodanese-like domain-containing protein 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0006735
Physical Location & Seq
Forward (+)
46526733 .. 46536461
9729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG367500.1

Sequence Viewer

Length: 450 bp
ATGTTGGGTGTTGTTCGCGTTTTGAGTACACTGAAGCCTGATTTTGTTGCCTCTTTGGTTAATTACAACCGTCTGATGGATCAGCTCTGCTCGCTCTGCGGCCCAATGAGGCTGATAAAGTGTTGTTTGGTGAATGGTTATTGCGAAATTGGCGAGTTGGGTAATGCACTGAAGATTTATGCAGCACCAACTGGGCATGCCTTTCCACAACTCAAGTTGCGGTATAAGCCTTCACTAATTCAGTTAGAAGGAAGTATTAGTCATCTTCCTTTGCTGGACCCTTCAATGCGAGCTACACCTCTAGCATCATCAGAGTGGAGGAAAAGATTGAAGGCAGTGAACAACAACACTACTGCTGATGCATCAACTCAAAATCCTAAAACAAACTATATTCTATTGGATGTGAGAAACGGTTTGGGAAGCAAAGTAGCCACGTCATGCAAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rhodanese Rhodanese_C

Protein Analysis

149

Amino Acids

16.33

Weight (kDa)

9.36

Isoelectric Point (pI)

15.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 18
AciI CCGC 2 cut(s) 99, 220
AclWI GGATC 1 cut(s) 87
AcuI CTGAAG 2 cut(s) 53, 191
AfaI GTAC 1 cut(s) 28
AfiI CCNNNNNNNGG 1 cut(s) 76
AgsI TTSAA 2 cut(s) 285, 331
AjiI CACGTC 1 cut(s) 435
AluBI AGCT 2 cut(s) 85, 293
AluI AGCT 2 cut(s) 85, 293
AlwI GGATC 1 cut(s) 87
AoxI GGCC 1 cut(s) 100
ApeKI GCWGC 1 cut(s) 182
AspS9I GGNCC 2 cut(s) 101, 277
AsuHPI GGTGA 1 cut(s) 142
AvaII GGWCC 1 cut(s) 277
BbvI GCAGC 1 cut(s) 194
BccI CCATC 1 cut(s) 70
BfaI CTAG 1 cut(s) 302
BisI GCNGC 2 cut(s) 100, 183
BlsI GCNGC 2 cut(s) 101, 184
Bme18I GGWCC 1 cut(s) 277
BmgBI CACGTC 1 cut(s) 435
BmgT120I GGNCC 2 cut(s) 101, 277
BmiI GGNNCC 1 cut(s) 279
BmrI ACTGGG 1 cut(s) 201
BmsI GCATC 3 cut(s) 314, 349, 371
BmuI ACTGGG 1 cut(s) 201
BpuEI CTTGAG 1 cut(s) 197
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 196
BseGI GGATG 1 cut(s) 406
BseLI CCNNNNNNNGG 1 cut(s) 76
BseNI ACTGG 1 cut(s) 196
BseXI GCAGC 1 cut(s) 194
Bsh1236I CGCG 1 cut(s) 18
BshFI GGCC 1 cut(s) 102
BslI CCNNNNNNNGG 1 cut(s) 76
BsnI GGCC 1 cut(s) 102
Bsp143I GATC 1 cut(s) 79
BspACI CCGC 2 cut(s) 99, 220
BspANI GGCC 1 cut(s) 102
BspFNI CGCG 1 cut(s) 18
BspLI GGNNCC 1 cut(s) 279
BspPI GGATC 1 cut(s) 87
BsrI ACTGG 1 cut(s) 196
BssMI GATC 1 cut(s) 79
Bst4CI ACNGT 2 cut(s) 71, 413
BstC8I GCNNGC 3 cut(s) 92, 198, 291
BstF5I GGATG 1 cut(s) 406
BstFNI CGCG 1 cut(s) 18
BstKTI GATC 1 cut(s) 82
BstMBI GATC 1 cut(s) 79
BstMWI GCNNNNNNNGC 4 cut(s) 91, 96, 150, 226
BstNSI RCATGY 1 cut(s) 200
BstUI CGCG 1 cut(s) 18
BstV1I GCAGC 1 cut(s) 194
BsuRI GGCC 1 cut(s) 102
BtrI CACGTC 1 cut(s) 435
BtsCI GGATG 1 cut(s) 406
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 3 cut(s) 29, 167, 342
Cac8I GCNNGC 3 cut(s) 92, 198, 291
Cfr13I GGNCC 2 cut(s) 101, 277
Csp6I GTAC 1 cut(s) 27
CviAII CATG 2 cut(s) 197, 438
CviJI RGCY 7 cut(s) 37, 85, 102, 112, 229, 293, 431
CviKI_1 RGCY 7 cut(s) 37, 85, 102, 112, 229, 293, 431
CviQI GTAC 1 cut(s) 27
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 277
Eco57I CTGAAG 2 cut(s) 53, 191
EcoT22I ATGCAT 1 cut(s) 364
FaeI CATG 2 cut(s) 200, 441
FaiI YATR 5 cut(s) 180, 198, 225, 390, 439
FatI CATG 2 cut(s) 196, 437
Fnu4HI GCNGC 2 cut(s) 100, 183
FokI GGATG 1 cut(s) 413
Fsp4HI GCNGC 2 cut(s) 100, 183
FspBI CTAG 1 cut(s) 302
GluI GCNGC 2 cut(s) 100, 183
HaeIII GGCC 1 cut(s) 102
Hin1II CATG 2 cut(s) 200, 441
HphI GGTGA 1 cut(s) 142
Hpy166II GTNNAC 2 cut(s) 29, 340
Hpy188I TCNGA 2 cut(s) 75, 313
Hpy8I GTNNAC 2 cut(s) 29, 340
HpyAV CCTTC 4 cut(s) 240, 242, 291, 325
HpyCH4III ACNGT 2 cut(s) 71, 413
HpyCH4IV ACGT 1 cut(s) 434
HpyCH4V TGCA 4 cut(s) 167, 182, 362, 441
HpyF10VI GCNNNNNNNGC 4 cut(s) 91, 96, 150, 226
HpySE526I ACGT 1 cut(s) 434
Hsp92II CATG 2 cut(s) 200, 441
Kzo9I GATC 1 cut(s) 79
LpnPI CCDG 3 cut(s) 51, 177, 260
Lsp1109I GCAGC 1 cut(s) 194
LweI GCATC 3 cut(s) 314, 349, 371
MaeI CTAG 1 cut(s) 302
MaeII ACGT 1 cut(s) 434
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MboII GAAGA 2 cut(s) 184, 257
MluCI AATT 3 cut(s) 61, 147, 237
MnlI CCTC 4 cut(s) 61, 102, 309, 312
Mph1103I ATGCAT 1 cut(s) 364
MseI TTAA 1 cut(s) 60
MslI CAYNNNNRTG 1 cut(s) 313
MvnI CGCG 1 cut(s) 18
MwoI GCNNNNNNNGC 4 cut(s) 91, 96, 150, 226
NdeII GATC 1 cut(s) 79
NlaIII CATG 2 cut(s) 200, 441
NlaIV GGNNCC 1 cut(s) 279
NsiI ATGCAT 1 cut(s) 364
NspI RCATGY 1 cut(s) 200
PaeI GCATGC 1 cut(s) 200
PkrI GCNGC 2 cut(s) 101, 184
PspN4I GGNNCC 1 cut(s) 279
PspPI GGNCC 2 cut(s) 101, 277
RsaI GTAC 1 cut(s) 28
RsaNI GTAC 1 cut(s) 27
RseI CAYNNNNRTG 1 cut(s) 313
SaqAI TTAA 1 cut(s) 60
SatI GCNGC 2 cut(s) 100, 183
Sau3AI GATC 1 cut(s) 79
Sau96I GGNCC 2 cut(s) 101, 277
SetI ASST 4 cut(s) 87, 295, 301, 437
SfaNI GCATC 3 cut(s) 314, 349, 371
SinI GGWCC 1 cut(s) 277
SmiMI CAYNNNNRTG 1 cut(s) 313
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
SphI GCATGC 1 cut(s) 200
Sse9I AATT 3 cut(s) 61, 147, 237
SsiI CCGC 2 cut(s) 99, 220
SspMI CTAG 1 cut(s) 302
TaaI ACNGT 2 cut(s) 71, 413
TaiI ACGT 1 cut(s) 437
TasI AATT 3 cut(s) 61, 147, 237
TatI WGTACW 1 cut(s) 26
TauI GCSGC 1 cut(s) 102
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TscAI CASTG 3 cut(s) 36, 174, 342
TseI GCWGC 1 cut(s) 182
TspRI CASTG 3 cut(s) 36, 174, 342
VpaK11BI GGWCC 1 cut(s) 277
XceI RCATGY 1 cut(s) 200
XspI CTAG 1 cut(s) 302
Zsp2I ATGCAT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.