Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016060.1

Orthogroup ID

OG0006735

Physical Location & Seq

Genomic Coordinates Forward (+)

17122 .. 18384

Gene Structure 1263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016060.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

atgttcctcacaactctcccatccaccaaaaccccaatcacccccaaaaccctaaccatccctctcaccttcttcttcacacacaccacctcaccctctcaccacgaacaaccccaaaaccagctcgaccaaataagcatagacaacacaccatactggaccaaaaccatccacgacctctgcacccgccaccgcgatgtcgaccaagccctccacctcctcgaccacctccgcctccgtggctaccgccccaacccgctcaacctcagcagcatcatccacgccctctgcgactccaaccgcttcgaagaagcccaccatcgcttcgcccactccatcgactcagactgcgtccctgaccagcgcacctgcaacgtcatcatcgctcggctactggattcggaaaccccgcaccgcacgttgggggttcttcgcgttttgagtcctctgaagcctgattttgtagcctctttggttaattacaaccgtctgatggatcagctctgctcgctccggcggcccagtgaggctcatagagtgttgtttgacatgcttattagagggcattgccccaacgtggtttcttacactacattgattaacgggtactgcggcgttggcgagttgggtaatgcgcacaaggtgtttgatgaaatgtgtgagaggggtgtagcgcctaattcgatgacttatagtgtgttgattcgtggcgttcttcggaagcgggagattgggcgtgctatggaattgatgggaagattgtgggagacaatgaagggtgaagaggacacacttgtgaaaaatgcggcattctcgaatttgattgattctatgtgtagagaagggtattttcaagaggttttcggtattgcagaagataggccacagggggagagtgtgaatgaggagtttgcttatggacagatgatagattcgctttgtatagccggaaggcatcatggggcgtcgagaattgtgtacatcatgaggcatagagggtttgttccacgcataacgtcgtataattgtatcatacatggactgagcaaggagggggagggaggttgtatgagagcttatcagttgttggaggaagggattgagtttggttacttgccgtctgaatacacttacaaggttctagtggaaggtctttgccaagagtccgacgttgacaaggcgcggcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

396

Amino Acids

45.08

Weight (kDa)

6.34

Isoelectric Point (pI)

32.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18020
fragaria_vesca	FvH4_5g17250
malus_domestica	MD06G1231100.v1.1
prunus_persica	Prupe.5G232400_v2.0.a1
pyrus_communis	pycom06g20240
rosa_chinensis	RchiOBHm_Chr7g0178541
rosa_laevigata	RLG00000005439 RLG00000010173
rosa_multiflora	Rmu_sc0000775.1_g000015 Rmu_sc0000961.1_g000015 Rmu_sc0002421.1_g000004 Rmu_sc0003637.1_g000006 Rmu_sc0011483.1_g000001 Rmu_sc0016060.1_g000005 Rmu_ssc0000343.1_g000033
rosa_roxburghii	Rroxscaffold_3G00274830 Rroxscaffold_5G00333820
rosa_rugosa	Rorug06G0417900
rosa_samantha	Rh3CG367500 Rh4AG426400 Rh4DG434700 Rh7AG016400 Rh7BG015900 Rh7CG016600 Rh7DG016500
rosa_wichuraiana	Rw7G001300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	377
Acc16I	TGCGCA	1 cut(s)	636
Acc36I	ACCTGC	1 cut(s)	377
AccBSI	CCGCTC	1 cut(s)	259
AccI	GTMKAC	1 cut(s)	201
AccII	CGCG	3 cut(s)	195, 435, 1183
AclWI	GGATC	1 cut(s)	504
AcsI	RAATTY	1 cut(s)	817
AcuI	CTGAAG	1 cut(s)	470
AcyI	GRCGYC	1 cut(s)	965
AdeI	CACNNNGTG	1 cut(s)	643
AfaI	GTAC	2 cut(s)	608, 980
AfiI	CCNNNNNNNGG	3 cut(s)	421, 493, 577
AgsI	TTSAA	1 cut(s)	854
AleI	CACNNNNGTG	1 cut(s)	794
AluBI	AGCT	3 cut(s)	124, 502, 1076
AluI	AGCT	3 cut(s)	124, 502, 1076
Alw26I	GTCTC	1 cut(s)	761
AlwI	GGATC	1 cut(s)	504
AoxI	GGCC	2 cut(s)	518, 881
ApeKI	GCWGC	1 cut(s)	270
ApoI	RAATTY	1 cut(s)	817
AspLEI	GCGC	4 cut(s)	366, 637, 676, 1183
AspS9I	GGNCC	2 cut(s)	159, 519
AsuHPI	GGTGA	5 cut(s)	31, 58, 84, 92, 791
AsuII	TTCGAA	1 cut(s)	306
AvaII	GGWCC	1 cut(s)	159
BbvCI	CCTCAGC	1 cut(s)	266
BbvI	GCAGC	1 cut(s)	282
BccI	CCATC	7 cut(s)	28, 65, 176, 327, 344, 487, 745
BceAI	ACGGC	1 cut(s)	1102
BcoDI	GTCTC	1 cut(s)	761
BfaI	CTAG	1 cut(s)	1142
BfoI	RGCGCY	1 cut(s)	677
BfuAI	ACCTGC	1 cut(s)	377
BglI	GCCNNNNNGGC	1 cut(s)	240
BisI	GCNGC	5 cut(s)	271, 518, 613, 807, 1184
BlsI	GCNGC	5 cut(s)	272, 519, 614, 808, 1185
Bme18I	GGWCC	1 cut(s)	159
BmgT120I	GGNCC	2 cut(s)	159, 519
BmrI	ACTGGG	1 cut(s)	516
BmsI	GCATC	2 cut(s)	282, 964
BmuI	ACTGGG	1 cut(s)	516
Bpu10I	CCTNAGC	1 cut(s)	266
Bpu14I	TTCGAA	1 cut(s)	306
BsaHI	GRCGYC	1 cut(s)	965
BsaJI	CCNNGG	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	3 cut(s)	421, 493, 577
Bse1I	ACTGG	3 cut(s)	161, 399, 522
Bse3DI	GCAATG	1 cut(s)	565
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	4 cut(s)	20, 57, 168, 276
BseLI	CCNNNNNNNGG	3 cut(s)	421, 493, 577
BseMI	GCAATG	1 cut(s)	565
BseMII	CTCAG	3 cut(s)	280, 357, 1034
BseNI	ACTGG	3 cut(s)	161, 399, 522
BseRI	GAGGAG	2 cut(s)	209, 920
BseXI	GCAGC	1 cut(s)	282
BsgI	GTGCAG	1 cut(s)	166
Bsh1236I	CGCG	3 cut(s)	195, 435, 1183
BshFI	GGCC	2 cut(s)	520, 883
BsiSI	CCGG	2 cut(s)	514, 948
BslFI	GGGAC	1 cut(s)	338
BslI	CCNNNNNNNGG	3 cut(s)	421, 493, 577
BsmAI	GTCTC	1 cut(s)	761
BsmFI	GGGAC	1 cut(s)	338
BsmI	GAATGC	1 cut(s)	809
BsnI	GGCC	2 cut(s)	520, 883
Bsp119I	TTCGAA	1 cut(s)	306
Bsp1407I	TGTACA	1 cut(s)	978
Bsp143I	GATC	1 cut(s)	496
BspANI	GGCC	2 cut(s)	520, 883
BspCNI	CTCAG	3 cut(s)	279, 356, 1035
BspFNI	CGCG	3 cut(s)	195, 435, 1183
BspHI	TCATGA	1 cut(s)	984
BspMI	ACCTGC	1 cut(s)	377
BspPI	GGATC	1 cut(s)	504
BspT104I	TTCGAA	1 cut(s)	306
BsrBI	CCGCTC	1 cut(s)	259
BsrDI	GCAATG	1 cut(s)	565
BsrGI	TGTACA	1 cut(s)	978
BsrI	ACTGG	3 cut(s)	161, 399, 522
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	1 cut(s)	496
BssNI	GRCGYC	1 cut(s)	965
Bst4CI	ACNGT	1 cut(s)	488
Bst6I	CTCTTC	1 cut(s)	777
BstACI	GRCGYC	1 cut(s)	965
BstAUI	TGTACA	1 cut(s)	978
BstBI	TTCGAA	1 cut(s)	306
BstC8I	GCNNGC	2 cut(s)	509, 738
BstDEI	CTNAG	3 cut(s)	266, 343, 1043
BstDSI	CCRYGG	1 cut(s)	238
BstF5I	GGATG	4 cut(s)	20, 57, 168, 276
BstFNI	CGCG	3 cut(s)	195, 435, 1183
BstH2I	RGCGCY	1 cut(s)	677
BstHHI	GCGC	4 cut(s)	366, 637, 676, 1183
BstKTI	GATC	1 cut(s)	499
BstMAI	GTCTC	1 cut(s)	761
BstMBI	GATC	1 cut(s)	496
BstMWI	GCNNNNNNNGC	4 cut(s)	240, 508, 517, 618
BstNSI	RCATGY	1 cut(s)	553
BstUI	CGCG	3 cut(s)	195, 435, 1183
BstV1I	GCAGC	1 cut(s)	282
BsuRI	GGCC	2 cut(s)	520, 883
BtgI	CCRYGG	1 cut(s)	238
BtgZI	GCGATG	3 cut(s)	210, 305, 367
BtsCI	GGATG	4 cut(s)	20, 57, 168, 276
BtsIMutI	CAGTG	1 cut(s)	529
BveI	ACCTGC	1 cut(s)	377
Cac8I	GCNNGC	2 cut(s)	509, 738
CciI	TCATGA	1 cut(s)	984
CfoI	GCGC	4 cut(s)	366, 637, 676, 1183
Cfr13I	GGNCC	2 cut(s)	159, 519
CseI	GACGC	2 cut(s)	340, 954
Csp6I	GTAC	2 cut(s)	607, 979
CviAII	CATG	4 cut(s)	550, 959, 985, 1037
CviQI	GTAC	2 cut(s)	607, 979
DdeI	CTNAG	3 cut(s)	266, 343, 1043
DpnI	GATC	1 cut(s)	498
DpnII	GATC	1 cut(s)	496
DraIII	CACNNNGTG	1 cut(s)	643
Eam1104I	CTCTTC	1 cut(s)	777
EarI	CTCTTC	1 cut(s)	777
EciI	GGCGGA	1 cut(s)	221
Eco47I	GGWCC	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	470
FaeI	CATG	4 cut(s)	553, 962, 988, 1040
FaqI	GGGAC	1 cut(s)	338
FatI	CATG	4 cut(s)	549, 958, 984, 1036
FauI	CCCGC	4 cut(s)	194, 264, 417, 717
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	5 cut(s)	271, 518, 613, 807, 1184
FokI	GGATG	4 cut(s)	7, 44, 155, 263
Fsp4HI	GCNGC	5 cut(s)	271, 518, 613, 807, 1184
FspAI	RTGCGCAY	1 cut(s)	636
FspBI	CTAG	1 cut(s)	1142
FspI	TGCGCA	1 cut(s)	636
GlaI	GCGC	4 cut(s)	365, 636, 675, 1182
GluI	GCNGC	5 cut(s)	271, 518, 613, 807, 1184
HaeII	RGCGCY	1 cut(s)	677
HaeIII	GGCC	2 cut(s)	520, 883
HapII	CCGG	2 cut(s)	514, 948
HgaI	GACGC	2 cut(s)	340, 954
HhaI	GCGC	4 cut(s)	366, 637, 676, 1183
Hin1I	GRCGYC	1 cut(s)	965
Hin1II	CATG	4 cut(s)	553, 962, 988, 1040
Hin6I	GCGC	4 cut(s)	364, 635, 674, 1181
HinP1I	GCGC	4 cut(s)	364, 635, 674, 1181
HincII	GTYRAC	2 cut(s)	202, 1174
HindII	GTYRAC	2 cut(s)	202, 1174
HinfI	GANTC	8 cut(s)	293, 341, 398, 442, 703, 827, 932, 1163
HpaII	CCGG	2 cut(s)	514, 948
HphI	GGTGA	5 cut(s)	31, 58, 84, 92, 791
Hpy166II	GTNNAC	3 cut(s)	202, 979, 1174
Hpy188I	TCNGA	7 cut(s)	346, 403, 450, 492, 720, 1123, 1168
Hpy188III	TCNNGA	4 cut(s)	814, 854, 969, 985
Hpy8I	GTNNAC	3 cut(s)	202, 979, 1174
Hpy99I	CGWCG	3 cut(s)	970, 1021, 1172
HpyAV	CCTTC	6 cut(s)	79, 769, 836, 945, 1088, 1142
HpyCH4III	ACNGT	1 cut(s)	488
HpyCH4IV	ACGT	5 cut(s)	375, 419, 576, 1016, 1170
HpyCH4V	TGCA	3 cut(s)	183, 372, 872
HpyF10VI	GCNNNNNNNGC	4 cut(s)	240, 508, 517, 618
HpyF3I	CTNAG	3 cut(s)	266, 343, 1043
HpySE526I	ACGT	5 cut(s)	375, 419, 576, 1016, 1170
Hsp92I	GRCGYC	1 cut(s)	965
Hsp92II	CATG	4 cut(s)	553, 962, 988, 1040
HspAI	GCGC	4 cut(s)	364, 635, 674, 1181
Kzo9I	GATC	1 cut(s)	496
LmnI	GCTCC	1 cut(s)	516
Lsp1109I	GCAGC	1 cut(s)	282
LweI	GCATC	2 cut(s)	282, 964
MaeI	CTAG	1 cut(s)	1142
MaeII	ACGT	5 cut(s)	375, 419, 576, 1016, 1170
MaeIII	GTNAC	1 cut(s)	1109
MalI	GATC	1 cut(s)	498
MbiI	CCGCTC	1 cut(s)	259
MboI	GATC	1 cut(s)	496
MboII	GAAGA	8 cut(s)	64, 67, 320, 422, 707, 768, 794, 887
MluCI	AATT	6 cut(s)	478, 679, 746, 817, 972, 1024
MlyI	GAGTC	4 cut(s)	287, 335, 451, 1172
MmeI	TCCRAC	2 cut(s)	321, 1068
MseI	TTAA	2 cut(s)	477, 600
MslI	CAYNNNNRTG	2 cut(s)	195, 794
MspI	CCGG	2 cut(s)	514, 948
Mva1269I	GAATGC	1 cut(s)	809
MvnI	CGCG	3 cut(s)	195, 435, 1183
MwoI	GCNNNNNNNGC	4 cut(s)	240, 508, 517, 618
NdeII	GATC	1 cut(s)	496
NlaIII	CATG	4 cut(s)	553, 962, 988, 1040
NmeAIII	GCCGAG	1 cut(s)	367
NsbI	TGCGCA	1 cut(s)	636
NspI	RCATGY	1 cut(s)	553
NspV	TTCGAA	1 cut(s)	306
OliI	CACNNNNGTG	1 cut(s)	794
PagI	TCATGA	1 cut(s)	984
PaqCI	CACCTGC	1 cut(s)	377
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PctI	GAATGC	1 cut(s)	809
PfeI	GAWTC	4 cut(s)	398, 703, 827, 932
PflFI	GACNNNGTC	1 cut(s)	350
PkrI	GCNGC	5 cut(s)	272, 519, 614, 808, 1185
PleI	GAGTC	4 cut(s)	287, 335, 450, 1171
PpsI	GAGTC	4 cut(s)	287, 335, 450, 1171
PspPI	GGNCC	2 cut(s)	159, 519
PsyI	GACNNNGTC	1 cut(s)	350
RsaI	GTAC	2 cut(s)	608, 980
RsaNI	GTAC	2 cut(s)	607, 979
RseI	CAYNNNNRTG	2 cut(s)	195, 794
SalI	GTCGAC	1 cut(s)	200
SaqAI	TTAA	2 cut(s)	477, 600
SatI	GCNGC	5 cut(s)	271, 518, 613, 807, 1184
Sau3AI	GATC	1 cut(s)	496
Sau96I	GGNCC	2 cut(s)	159, 519
SchI	GAGTC	4 cut(s)	287, 335, 451, 1172
SfaNI	GCATC	2 cut(s)	282, 964
SfuI	TTCGAA	1 cut(s)	306
SinI	GGWCC	1 cut(s)	159
SmiMI	CAYNNNNRTG	2 cut(s)	195, 794
Sse9I	AATT	6 cut(s)	478, 679, 746, 817, 972, 1024
SspMI	CTAG	1 cut(s)	1142
TaaI	ACNGT	1 cut(s)	488
TaiI	ACGT	5 cut(s)	378, 422, 579, 1019, 1173
TaqI	TCGA	8 cut(s)	126, 201, 222, 306, 339, 683, 815, 968
TasI	AATT	6 cut(s)	478, 679, 746, 817, 972, 1024
TatI	WGTACW	1 cut(s)	978
TauI	GCSGC	4 cut(s)	520, 615, 809, 1186
TfiI	GAWTC	4 cut(s)	398, 703, 827, 932
Tru1I	TTAA	2 cut(s)	477, 600
Tru9I	TTAA	2 cut(s)	477, 600
TscAI	CASTG	1 cut(s)	529
TseI	GCWGC	1 cut(s)	270
TspDTI	ATGAA	2 cut(s)	666, 788
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	1 cut(s)	529
Tth111I	GACNNNGTC	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	159
XapI	RAATTY	1 cut(s)	817
XceI	RCATGY	1 cut(s)	553
XmiI	GTMKAC	1 cut(s)	201
XspI	CTAG	1 cut(s)	1142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.