Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G18020 |
| fragaria_vesca | FvH4_5g17250 |
| malus_domestica | MD06G1231100.v1.1 |
| prunus_persica | Prupe.5G232400_v2.0.a1 |
| pyrus_communis | pycom06g20240 |
| rosa_chinensis | RchiOBHm_Chr7g0178541 |
| rosa_laevigata | RLG00000005439 RLG00000010173 |
| rosa_multiflora | Rmu_sc0000775.1_g000015 Rmu_sc0000961.1_g000015 Rmu_sc0002421.1_g000004 Rmu_sc0003637.1_g000006 Rmu_sc0011483.1_g000001 Rmu_sc0016060.1_g000005 Rmu_ssc0000343.1_g000033 |
| rosa_roxburghii | Rroxscaffold_3G00274830 Rroxscaffold_5G00333820 |
| rosa_rugosa | Rorug06G0417900 |
| rosa_samantha | Rh3CG367500 Rh4AG426400 Rh4DG434700 Rh7AG016400 Rh7BG015900 Rh7CG016600 Rh7DG016500 |
| rosa_wichuraiana | Rw7G001300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 1443, 2079, 2781 |
| AatII | GACGTC | 3 cut(s) | 408, 1377, 2715 |
| Acc16I | TGCGCA | 1 cut(s) | 843 |
| AccB1I | GGYRCC | 1 cut(s) | 880 |
| AccI | GTMKAC | 2 cut(s) | 408, 2564 |
| AccII | CGCG | 1 cut(s) | 402 |
| AciI | CCGC | 9 cut(s) | 311, 400, 421, 439, 508, 529, 1013, 1851, 2348 |
| AclI | AACGTT | 1 cut(s) | 2798 |
| AclWI | GGATC | 2 cut(s) | 1948, 3291 |
| AcoI | YGGCCR | 4 cut(s) | 535, 1848, 1943, 3281 |
| AcsI | RAATTY | 1 cut(s) | 2239 |
| AcyI | GRCGYC | 7 cut(s) | 405, 674, 881, 1169, 1374, 2507, 2712 |
| AfaI | GTAC | 8 cut(s) | 1605, 1763, 1861, 2669, 2943, 3056, 3101, 3199 |
| AfeI | AGCGCT | 2 cut(s) | 1596, 2934 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 734, 1369, 1736, 2707, 3074 |
| AhlI | ACTAGT | 1 cut(s) | 2041 |
| AjiI | CACGTC | 2 cut(s) | 1645, 2983 |
| AjnI | CCWGG | 2 cut(s) | 1172, 2510 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1984, 2016 |
| Alw21I | GWGCWC | 3 cut(s) | 1332, 1639, 2977 |
| Alw26I | GTCTC | 2 cut(s) | 992, 2062 |
| Alw44I | GTGCAC | 2 cut(s) | 1635, 2973 |
| AlwI | GGATC | 2 cut(s) | 1948, 3291 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 387, 2174 |
| Ama87I | CYCGRG | 2 cut(s) | 1730, 3068 |
| Aor51HI | AGCGCT | 2 cut(s) | 1596, 2934 |
| AoxI | GGCC | 5 cut(s) | 535, 1848, 1943, 2349, 3281 |
| ApaLI | GTGCAC | 2 cut(s) | 1635, 2973 |
| ApeKI | GCWGC | 6 cut(s) | 477, 1714, 1976, 2096, 3188, 3319 |
| ApoI | RAATTY | 1 cut(s) | 2239 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 2543, 2575, 2812, 2844 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 851, 1739, 3077 |
| AspLEI | GCGC | 8 cut(s) | 392, 560, 573, 642, 844, 883, 1597, 2935 |
| AspS9I | GGNCC | 2 cut(s) | 1342, 2680 |
| AsuHPI | GGTGA | 9 cut(s) | 41, 232, 279, 358, 848, 1534, 1660, 2333, 2998 |
| AsuII | TTCGAA | 1 cut(s) | 2237 |
| AvaI | CYCGRG | 2 cut(s) | 1730, 3068 |
| AvaII | GGWCC | 2 cut(s) | 1342, 2680 |
| BaeGI | GKGCMC | 2 cut(s) | 1639, 2977 |
| BalI | TGGCCA | 3 cut(s) | 537, 1945, 3283 |
| BanI | GGYRCC | 1 cut(s) | 880 |
| BauI | CACGAG | 1 cut(s) | 14 |
| BbsI | GAAGAC | 2 cut(s) | 12, 354 |
| Bbv12I | GWGCWC | 3 cut(s) | 1332, 1639, 2977 |
| BbvCI | CCTCAGC | 1 cut(s) | 473 |
| BbvI | GCAGC | 6 cut(s) | 489, 1701, 1963, 2083, 3175, 3306 |
| BccI | CCATC | 6 cut(s) | 952, 1570, 1954, 2287, 2908, 3292 |
| BceAI | ACGGC | 2 cut(s) | 463, 1858 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3170, 3204 |
| BciT130I | CCWGG | 2 cut(s) | 1174, 2512 |
| BciVI | GTATCC | 1 cut(s) | 2181 |
| BclI | TGATCA | 3 cut(s) | 804, 1539, 2877 |
| BcoDI | GTCTC | 2 cut(s) | 992, 2062 |
| BcuI | ACTAGT | 1 cut(s) | 2041 |
| BfaI | CTAG | 7 cut(s) | 1292, 1434, 1607, 2042, 2630, 2772, 2945 |
| BfoI | RGCGCY | 3 cut(s) | 884, 1598, 2936 |
| BfuI | GTATCC | 1 cut(s) | 2181 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 447 |
| BglII | AGATCT | 1 cut(s) | 161 |
| BisI | GCNGC | 9 cut(s) | 478, 1014, 1715, 1851, 1977, 2097, 2349, 3189, 3320 |
| BlsI | GCNGC | 9 cut(s) | 479, 1015, 1716, 1852, 1978, 2098, 2350, 3190, 3321 |
| BmcAI | AGTACT | 2 cut(s) | 1861, 3199 |
| Bme1390I | CCNGG | 2 cut(s) | 1174, 2512 |
| Bme18I | GGWCC | 2 cut(s) | 1342, 2680 |
| BmeT110I | CYCGRG | 2 cut(s) | 1730, 3068 |
| BmgBI | CACGTC | 2 cut(s) | 1645, 2983 |
| BmgT120I | GGNCC | 2 cut(s) | 1342, 2680 |
| BmiI | GGNNCC | 2 cut(s) | 882, 2166 |
| BmrFI | CCNGG | 2 cut(s) | 1174, 2512 |
| BmsI | GCATC | 7 cut(s) | 829, 1168, 1500, 2038, 2083, 2320, 2838 |
| BpiI | GAAGAC | 2 cut(s) | 12, 354 |
| BpmI | CTGGAG | 3 cut(s) | 1499, 2151, 2837 |
| Bpu10I | CCTNAGC | 1 cut(s) | 473 |
| Bpu14I | TTCGAA | 1 cut(s) | 2237 |
| BpuEI | CTTGAG | 2 cut(s) | 1680, 3018 |
| Bsa29I | ATCGAT | 1 cut(s) | 3295 |
| BsaHI | GRCGYC | 7 cut(s) | 405, 674, 881, 1169, 1374, 2507, 2712 |
| BsaI | GGTCTC | 1 cut(s) | 2062 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 734, 1369, 1736, 2707, 3074 |
| Bse1I | ACTGG | 3 cut(s) | 1522, 2166, 2860 |
| Bse3DI | GCAATG | 6 cut(s) | 586, 626, 1074, 1818, 2409, 3156 |
| BseBI | CCWGG | 2 cut(s) | 1174, 2512 |
| BseCI | ATCGAT | 1 cut(s) | 3295 |
| BseGI | GGATG | 4 cut(s) | 1936, 2275, 2880, 3274 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 734, 1369, 1736, 2707, 3074 |
| BseMI | GCAATG | 6 cut(s) | 586, 626, 1074, 1818, 2409, 3156 |
| BseMII | CTCAG | 4 cut(s) | 487, 1238, 1476, 2814 |
| BseNI | ACTGG | 3 cut(s) | 1522, 2166, 2860 |
| BseRI | GAGGAG | 3 cut(s) | 416, 1207, 2545 |
| BseSI | GKGCMC | 2 cut(s) | 1639, 2977 |
| BseXI | GCAGC | 6 cut(s) | 489, 1701, 1963, 2083, 3175, 3306 |
| BseYI | CCCAGC | 1 cut(s) | 2051 |
| BsgI | GTGCAG | 1 cut(s) | 1700 |
| Bsh1236I | CGCG | 1 cut(s) | 402 |
| Bsh1285I | CGRYCG | 1 cut(s) | 433 |
| BshFI | GGCC | 5 cut(s) | 537, 1850, 1945, 2351, 3283 |
| BshNI | GGYRCC | 1 cut(s) | 880 |
| BshVI | ATCGAT | 1 cut(s) | 3295 |
| BsiEI | CGRYCG | 1 cut(s) | 433 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1332, 1639, 2977 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1730, 3068 |
| BslFI | GGGAC | 2 cut(s) | 115, 441 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 734, 1369, 1736, 2707, 3074 |
| BsmAI | GTCTC | 2 cut(s) | 992, 2062 |
| BsmFI | GGGAC | 2 cut(s) | 115, 441 |
| BsmI | GAATGC | 3 cut(s) | 216, 269, 787 |
| BsnI | GGCC | 5 cut(s) | 537, 1850, 1945, 2351, 3283 |
| Bso31I | GGTCTC | 1 cut(s) | 2062 |
| BsoBI | CYCGRG | 2 cut(s) | 1730, 3068 |
| Bsp119I | TTCGAA | 1 cut(s) | 2237 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1332, 1639, 2977 |
| BspACI | CCGC | 9 cut(s) | 311, 400, 421, 439, 508, 529, 1013, 1851, 2348 |
| BspANI | GGCC | 5 cut(s) | 537, 1850, 1945, 2351, 3283 |
| BspCNI | CTCAG | 4 cut(s) | 486, 1239, 1477, 2815 |
| BspDI | ATCGAT | 1 cut(s) | 3295 |
| BspFNI | CGCG | 1 cut(s) | 402 |
| BspHI | TCATGA | 2 cut(s) | 978, 2313 |
| BspLI | GGNNCC | 2 cut(s) | 882, 2166 |
| BspPI | GGATC | 2 cut(s) | 1948, 3291 |
| BspT104I | TTCGAA | 1 cut(s) | 2237 |
| BspT107I | GGYRCC | 1 cut(s) | 880 |
| BspTNI | GGTCTC | 1 cut(s) | 2062 |
| BsrDI | GCAATG | 6 cut(s) | 586, 626, 1074, 1818, 2409, 3156 |
| BsrI | ACTGG | 3 cut(s) | 1522, 2166, 2860 |
| BssNAI | GTATAC | 1 cut(s) | 2565 |
| BssNI | GRCGYC | 7 cut(s) | 405, 674, 881, 1169, 1374, 2507, 2712 |
| BssSI | CACGAG | 1 cut(s) | 14 |
| Bst1107I | GTATAC | 1 cut(s) | 2565 |
| Bst2BI | CACGAG | 1 cut(s) | 14 |
| Bst2UI | CCWGG | 2 cut(s) | 1174, 2512 |
| Bst6I | CTCTTC | 1 cut(s) | 2429 |
| BstACI | GRCGYC | 7 cut(s) | 405, 674, 881, 1169, 1374, 2507, 2712 |
| BstBI | TTCGAA | 1 cut(s) | 2237 |
| BstC8I | GCNNGC | 9 cut(s) | 144, 190, 945, 1800, 2023, 2101, 2280, 3138, 3366 |
| BstDEI | CTNAG | 7 cut(s) | 473, 1247, 1485, 1917, 2585, 2823, 3255 |
| BstEII | GGTNACC | 2 cut(s) | 1648, 2986 |
| BstF5I | GGATG | 4 cut(s) | 1936, 2275, 2880, 3274 |
| BstFNI | CGCG | 1 cut(s) | 402 |
| BstH2I | RGCGCY | 3 cut(s) | 884, 1598, 2936 |
| BstHHI | GCGC | 8 cut(s) | 392, 560, 573, 642, 844, 883, 1597, 2935 |
| BstMAI | GTCTC | 2 cut(s) | 992, 2062 |
| BstMCI | CGRYCG | 1 cut(s) | 433 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 447, 637, 1808, 3146 |
| BstNI | CCWGG | 2 cut(s) | 1174, 2512 |
| BstNSI | RCATGY | 2 cut(s) | 146, 192 |
| BstPI | GGTNACC | 2 cut(s) | 1648, 2986 |
| BstSCI | CCNGG | 2 cut(s) | 1172, 2510 |
| BstSLI | GKGCMC | 2 cut(s) | 1639, 2977 |
| BstUI | CGCG | 1 cut(s) | 402 |
| BstV1I | GCAGC | 6 cut(s) | 489, 1701, 1963, 2083, 3175, 3306 |
| BstV2I | GAAGAC | 2 cut(s) | 12, 354 |
| BstX2I | RGATCY | 2 cut(s) | 161, 1953 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 533 |
| BstYI | RGATCY | 2 cut(s) | 161, 1953 |
| BstZ17I | GTATAC | 1 cut(s) | 2565 |
| Bsu15I | ATCGAT | 1 cut(s) | 3295 |
| BsuI | GTATCC | 1 cut(s) | 2181 |
| BsuRI | GGCC | 5 cut(s) | 537, 1850, 1945, 2351, 3283 |
| BsuTUI | ATCGAT | 1 cut(s) | 3295 |
| BtrI | CACGTC | 2 cut(s) | 1645, 2983 |
| BtsCI | GGATG | 4 cut(s) | 1936, 2275, 2880, 3274 |
| BtsIMutI | CAGTG | 4 cut(s) | 1529, 1675, 2867, 3013 |
| Cac8I | GCNNGC | 9 cut(s) | 144, 190, 945, 1800, 2023, 2101, 2280, 3138, 3366 |
| CaiI | CAGNNNCTG | 2 cut(s) | 387, 2174 |
| CciI | TCATGA | 2 cut(s) | 978, 2313 |
| CfoI | GCGC | 8 cut(s) | 392, 560, 573, 642, 844, 883, 1597, 2935 |
| Cfr13I | GGNCC | 2 cut(s) | 1342, 2680 |
| ClaI | ATCGAT | 1 cut(s) | 3295 |
| CseI | GACGC | 5 cut(s) | 469, 663, 904, 1158, 2496 |
| Csp6I | GTAC | 8 cut(s) | 1604, 1762, 1860, 2668, 2942, 3055, 3100, 3198 |
| CviQI | GTAC | 8 cut(s) | 1604, 1762, 1860, 2668, 2942, 3055, 3100, 3198 |
| DdeI | CTNAG | 7 cut(s) | 473, 1247, 1485, 1917, 2585, 2823, 3255 |
| DinI | GGCGCC | 1 cut(s) | 882 |
| EaeI | YGGCCR | 4 cut(s) | 535, 1848, 1943, 3281 |
| Eam1104I | CTCTTC | 1 cut(s) | 2429 |
| EarI | CTCTTC | 1 cut(s) | 2429 |
| EciI | GGCGGA | 2 cut(s) | 410, 428 |
| Eco31I | GGTCTC | 1 cut(s) | 2062 |
| Eco47I | GGWCC | 2 cut(s) | 1342, 2680 |
| Eco47III | AGCGCT | 2 cut(s) | 1596, 2934 |
| Eco88I | CYCGRG | 2 cut(s) | 1730, 3068 |
| Eco91I | GGTNACC | 2 cut(s) | 1648, 2986 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1342, 2680 |
| EcoO65I | GGTNACC | 2 cut(s) | 1648, 2986 |
| EcoRII | CCWGG | 2 cut(s) | 1172, 2510 |
| EgeI | GGCGCC | 1 cut(s) | 882 |
| EheI | GGCGCC | 1 cut(s) | 882 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1689, 1721, 3027, 3059 |
| FaqI | GGGAC | 2 cut(s) | 115, 441 |
| FbaI | TGATCA | 3 cut(s) | 804, 1539, 2877 |
| FblI | GTMKAC | 2 cut(s) | 408, 2564 |
| Fnu4HI | GCNGC | 9 cut(s) | 478, 1014, 1715, 1851, 1977, 2097, 2349, 3189, 3320 |
| FokI | GGATG | 4 cut(s) | 1943, 2282, 2867, 3281 |
| Fsp4HI | GCNGC | 9 cut(s) | 478, 1014, 1715, 1851, 1977, 2097, 2349, 3189, 3320 |
| FspBI | CTAG | 7 cut(s) | 1292, 1434, 1607, 2042, 2630, 2772, 2945 |
| FspI | TGCGCA | 1 cut(s) | 843 |
| GlaI | GCGC | 8 cut(s) | 391, 559, 572, 641, 843, 882, 1596, 2934 |
| GluI | GCNGC | 9 cut(s) | 478, 1014, 1715, 1851, 1977, 2097, 2349, 3189, 3320 |
| GsaI | CCCAGC | 1 cut(s) | 2055 |
| GsuI | CTGGAG | 3 cut(s) | 1499, 2151, 2837 |
| HaeII | RGCGCY | 3 cut(s) | 884, 1598, 2936 |
| HaeIII | GGCC | 5 cut(s) | 537, 1850, 1945, 2351, 3283 |
| HgaI | GACGC | 5 cut(s) | 469, 663, 904, 1158, 2496 |
| HhaI | GCGC | 8 cut(s) | 392, 560, 573, 642, 844, 883, 1597, 2935 |
| Hin1I | GRCGYC | 7 cut(s) | 405, 674, 881, 1169, 1374, 2507, 2712 |
| Hin6I | GCGC | 8 cut(s) | 390, 558, 571, 640, 842, 881, 1595, 2933 |
| HinP1I | GCGC | 8 cut(s) | 390, 558, 571, 640, 842, 881, 1595, 2933 |
| HincII | GTYRAC | 1 cut(s) | 409 |
| HindII | GTYRAC | 1 cut(s) | 409 |
| HphI | GGTGA | 9 cut(s) | 41, 232, 279, 358, 848, 1534, 1660, 2333, 2998 |
| Hpy166II | GTNNAC | 9 cut(s) | 409, 487, 1426, 1637, 2565, 2644, 2670, 2764, 2975 |
| Hpy8I | GTNNAC | 9 cut(s) | 409, 487, 1426, 1637, 2565, 2644, 2670, 2764, 2975 |
| Hpy99I | CGWCG | 8 cut(s) | 407, 410, 413, 485, 569, 1225, 2563, 3182 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 447, 637, 1808, 3146 |
| HpyF3I | CTNAG | 7 cut(s) | 473, 1247, 1485, 1917, 2585, 2823, 3255 |
| Hsp92I | GRCGYC | 7 cut(s) | 405, 674, 881, 1169, 1374, 2507, 2712 |
| HspAI | GCGC | 8 cut(s) | 390, 558, 571, 640, 842, 881, 1595, 2933 |
| KasI | GGCGCC | 1 cut(s) | 880 |
| Ksp22I | TGATCA | 3 cut(s) | 804, 1539, 2877 |
| LmnI | GCTCC | 3 cut(s) | 1518, 2170, 2856 |
| Lsp1109I | GCAGC | 6 cut(s) | 489, 1701, 1963, 2083, 3175, 3306 |
| LweI | GCATC | 7 cut(s) | 829, 1168, 1500, 2038, 2083, 2320, 2838 |
| MaeI | CTAG | 7 cut(s) | 1292, 1434, 1607, 2042, 2630, 2772, 2945 |
| MaeIII | GTNAC | 9 cut(s) | 1102, 1313, 1648, 1756, 2176, 2440, 2651, 2986, 3094 |
| MflI | RGATCY | 2 cut(s) | 161, 1953 |
| MhlI | GDGCHC | 3 cut(s) | 1332, 1639, 2977 |
| MlsI | TGGCCA | 3 cut(s) | 537, 1945, 3283 |
| MluNI | TGGCCA | 3 cut(s) | 537, 1945, 3283 |
| Mly113I | GGCGCC | 1 cut(s) | 881 |
| MlyI | GAGTC | 2 cut(s) | 455, 494 |
| MmeI | TCCRAC | 3 cut(s) | 175, 528, 576 |
| Mox20I | TGGCCA | 3 cut(s) | 537, 1945, 3283 |
| MroXI | GAANNNNTTC | 3 cut(s) | 851, 1739, 3077 |
| MscI | TGGCCA | 3 cut(s) | 537, 1945, 3283 |
| MslI | CAYNNNNRTG | 1 cut(s) | 187 |
| Msp20I | TGGCCA | 3 cut(s) | 537, 1945, 3283 |
| MspA1I | CMGCKG | 1 cut(s) | 1853 |
| MspR9I | CCNGG | 2 cut(s) | 1174, 2512 |
| Mva1269I | GAATGC | 3 cut(s) | 216, 269, 787 |
| MvaI | CCWGG | 2 cut(s) | 1174, 2512 |
| MvnI | CGCG | 1 cut(s) | 402 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 447, 637, 1808, 3146 |
| NarI | GGCGCC | 1 cut(s) | 881 |
| NlaIV | GGNNCC | 2 cut(s) | 882, 2166 |
| NmuCI | GTSAC | 6 cut(s) | 1102, 1648, 1756, 2440, 2986, 3094 |
| NsbI | TGCGCA | 1 cut(s) | 843 |
| NspI | RCATGY | 2 cut(s) | 146, 192 |
| NspV | TTCGAA | 1 cut(s) | 2237 |
| PaeI | GCATGC | 2 cut(s) | 146, 192 |
| PagI | TCATGA | 2 cut(s) | 978, 2313 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 495, 1890 |
| PctI | GAATGC | 3 cut(s) | 216, 269, 787 |
| PdmI | GAANNNNTTC | 3 cut(s) | 851, 1739, 3077 |
| PfoI | TCCNGGA | 2 cut(s) | 1172, 2510 |
| PkrI | GCNGC | 9 cut(s) | 479, 1015, 1716, 1852, 1978, 2098, 2350, 3190, 3321 |
| Ple19I | CGATCG | 1 cut(s) | 433 |
| PleI | GAGTC | 2 cut(s) | 455, 494 |
| PluTI | GGCGCC | 1 cut(s) | 884 |
| PpsI | GAGTC | 2 cut(s) | 455, 494 |
| PpuMI | RGGWCCY | 2 cut(s) | 1342, 2680 |
| PsiI | TTATAA | 3 cut(s) | 1443, 2079, 2781 |
| Psp1406I | AACGTT | 1 cut(s) | 2798 |
| Psp5II | RGGWCCY | 2 cut(s) | 1342, 2680 |
| Psp6I | CCWGG | 2 cut(s) | 1172, 2510 |
| PspEI | GGTNACC | 2 cut(s) | 1648, 2986 |
| PspFI | CCCAGC | 1 cut(s) | 2051 |
| PspGI | CCWGG | 2 cut(s) | 1172, 2510 |
| PspN4I | GGNNCC | 2 cut(s) | 882, 2166 |
| PspPI | GGNCC | 2 cut(s) | 1342, 2680 |
| PspPPI | RGGWCCY | 2 cut(s) | 1342, 2680 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 1298, 1330, 2636, 2668 |
| PstNI | CAGNNNCTG | 2 cut(s) | 387, 2174 |
| PsuI | RGATCY | 2 cut(s) | 161, 1953 |
| PvuI | CGATCG | 1 cut(s) | 433 |
| RsaI | GTAC | 8 cut(s) | 1605, 1763, 1861, 2669, 2943, 3056, 3101, 3199 |
| RsaNI | GTAC | 8 cut(s) | 1604, 1762, 1860, 2668, 2942, 3055, 3100, 3198 |
| RseI | CAYNNNNRTG | 1 cut(s) | 187 |
| SalI | GTCGAC | 1 cut(s) | 407 |
| SatI | GCNGC | 9 cut(s) | 478, 1014, 1715, 1851, 1977, 2097, 2349, 3189, 3320 |
| Sau96I | GGNCC | 2 cut(s) | 1342, 2680 |
| ScaI | AGTACT | 2 cut(s) | 1861, 3199 |
| SchI | GAGTC | 2 cut(s) | 455, 494 |
| ScrFI | CCNGG | 2 cut(s) | 1174, 2512 |
| SduI | GDGCHC | 3 cut(s) | 1332, 1639, 2977 |
| SfaNI | GCATC | 7 cut(s) | 829, 1168, 1500, 2038, 2083, 2320, 2838 |
| SfoI | GGCGCC | 1 cut(s) | 882 |
| SfuI | TTCGAA | 1 cut(s) | 2237 |
| SgrDI | CGTCGACG | 1 cut(s) | 407 |
| SinI | GGWCC | 2 cut(s) | 1342, 2680 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 187 |
| SmlI | CTYRAG | 2 cut(s) | 1695, 3033 |
| SmoI | CTYRAG | 2 cut(s) | 1695, 3033 |
| SpeI | ACTAGT | 1 cut(s) | 2041 |
| SphI | GCATGC | 2 cut(s) | 146, 192 |
| SsiI | CCGC | 9 cut(s) | 311, 400, 421, 439, 508, 529, 1013, 1851, 2348 |
| SspDI | GGCGCC | 1 cut(s) | 880 |
| SspMI | CTAG | 7 cut(s) | 1292, 1434, 1607, 2042, 2630, 2772, 2945 |
| StyD4I | CCNGG | 2 cut(s) | 1172, 2510 |
| TatI | WGTACW | 3 cut(s) | 1859, 2667, 3197 |
| TauI | GCSGC | 3 cut(s) | 1016, 1853, 2351 |
| TscAI | CASTG | 4 cut(s) | 1529, 1675, 2867, 3013 |
| TseFI | GTSAC | 6 cut(s) | 1102, 1648, 1756, 2440, 2986, 3094 |
| TseI | GCWGC | 6 cut(s) | 477, 1714, 1976, 2096, 3188, 3319 |
| Tsp45I | GTSAC | 6 cut(s) | 1102, 1648, 1756, 2440, 2986, 3094 |
| TspGWI | ACGGA | 3 cut(s) | 1311, 2172, 2649 |
| TspRI | CASTG | 4 cut(s) | 1529, 1675, 2867, 3013 |
| VneI | GTGCAC | 2 cut(s) | 1635, 2973 |
| VpaK11BI | GGWCC | 2 cut(s) | 1342, 2680 |
| XapI | RAATTY | 1 cut(s) | 2239 |
| XceI | RCATGY | 2 cut(s) | 146, 192 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 530 |
| XmiI | GTMKAC | 2 cut(s) | 408, 2564 |
| XmnI | GAANNNNTTC | 3 cut(s) | 851, 1739, 3077 |
| XspI | CTAG | 7 cut(s) | 1292, 1434, 1607, 2042, 2630, 2772, 2945 |
| ZraI | GACGTC | 3 cut(s) | 406, 1375, 2713 |
| ZrmI | AGTACT | 2 cut(s) | 1861, 3199 |