Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003637.1

Orthogroup ID

OG0006735

Physical Location & Seq

Genomic Coordinates Forward (+)

18694 .. 21759

Gene Structure 3066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003637.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

atgcaggcgtgcgtgcgtcttcttctggatgcagctacggggcgcaaggccgagctgcgaggggtcgccggggctgtgcttcgggggggcggggctggacagggcacagagtgctgctgggttgtgcaggcgctgtgctgggagggtgctatgcgctggtgcaggcggagcgtgctagggacgctggattggtgcgctgttgtgcgagggcacgggataggcagaggtaaggaagatgatgggttgggtgcggagagcacattgctcttcgctgttcgctgggcgtcgatctggccggctgtgggaggctgcaaggcgcagggcaaggctgaggtgcaagcgagcaggcagggagacaaacctaatcgcacctatcctttgttttcttctcccaccgccgatcaagtccttgcaatcttcttcttcttctgcacctgccaccactatgtcgaccaagcccaccacctcctcaaccaccttcgcctctgtggctaccgcaccaacccgctcaacctcagcagcgtcatccacgctctttgcgactccaactgcctcgaagaagcccaccaccgcttttcccactctattgactcagattgcgtccctgaccagcgcacctgcaacgtcatcatcgctaggctactcgattcccaaaccccacacagcacgttgggtgttattcgggttttgagtgcactgaaacctgattttgttgcctctttggttaattacaattgtctgatggatcagctttgctcgctccgcggcccaatgaggctgatagagtgttgtttgatgaatggttattgcgaaattggcgagttgggtaatgcacagaagggggcaataaaatcagacgccggaatccgatcactagtccggtatccggatttcgatgaccggttgccagattctggtcaccggtctctgaattctggtcaccagtcaccagagtctgcggccggccattggtcatcggagtccggcaaggtctccgatgacttttctctctacgtgacaaataaggagagggcaaaaatgtctcaaaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

350

Amino Acids

38.26

Weight (kDa)

7.51

Isoelectric Point (pI)

39.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18020
fragaria_vesca	FvH4_5g17250
malus_domestica	MD06G1231100.v1.1
prunus_persica	Prupe.5G232400_v2.0.a1
pyrus_communis	pycom06g20240
rosa_chinensis	RchiOBHm_Chr7g0178541
rosa_laevigata	RLG00000005439 RLG00000010173
rosa_multiflora	Rmu_sc0000775.1_g000015 Rmu_sc0000961.1_g000015 Rmu_sc0002421.1_g000004 Rmu_sc0003637.1_g000006 Rmu_sc0011483.1_g000001 Rmu_sc0016060.1_g000005 Rmu_ssc0000343.1_g000033
rosa_roxburghii	Rroxscaffold_3G00274830 Rroxscaffold_5G00333820
rosa_rugosa	Rorug06G0417900
rosa_samantha	Rh3CG367500 Rh4AG426400 Rh4DG434700 Rh7AG016400 Rh7BG015900 Rh7CG016600 Rh7DG016500
rosa_wichuraiana	Rw7G001300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	443, 626
Acc36I	ACCTGC	2 cut(s)	443, 626
AccB7I	CCANNNNNTGG	1 cut(s)	914
AccBSI	CCGCTC	1 cut(s)	508
AccI	GTMKAC	1 cut(s)	450
AccII	CGCG	1 cut(s)	765
AccIII	TCCGGA	1 cut(s)	886
AclWI	GGATC	1 cut(s)	753
AcoI	YGGCCR	3 cut(s)	293, 960, 964
AcsI	RAATTY	1 cut(s)	931
AcyI	GRCGYC	2 cut(s)	284, 858
AdeI	CACNNNGTG	1 cut(s)	111
AfiI	CCNNNNNNNGG	4 cut(s)	302, 886, 914, 969
AgeI	ACCGGT	2 cut(s)	900, 921
AhlI	ACTAGT	1 cut(s)	874
AluBI	AGCT	3 cut(s)	35, 55, 751
AluI	AGCT	3 cut(s)	35, 55, 751
Alw21I	GWGCWC	2 cut(s)	260, 697
Alw26I	GTCTC	4 cut(s)	348, 930, 997, 1047
Alw44I	GTGCAC	1 cut(s)	693
AlwI	GGATC	1 cut(s)	753
AlwNI	CAGNNNCTG	3 cut(s)	133, 914, 956
Aor13HI	TCCGGA	1 cut(s)	886
AoxI	GGCC	5 cut(s)	48, 293, 766, 960, 964
ApaLI	GTGCAC	1 cut(s)	693
ApeKI	GCWGC	5 cut(s)	32, 55, 114, 309, 519
ApoI	RAATTY	1 cut(s)	931
AsiGI	ACCGGT	2 cut(s)	900, 921
AspLEI	GCGC	6 cut(s)	45, 133, 156, 197, 319, 615
AspS9I	GGNCC	1 cut(s)	767
AsuC2I	CCSGG	1 cut(s)	70
AsuHPI	GGTGA	3 cut(s)	911, 932, 939
BaeGI	GKGCMC	3 cut(s)	107, 213, 697
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	2 cut(s)	260, 697
BbvCI	CCTCAGC	2 cut(s)	330, 515
BbvI	GCAGC	5 cut(s)	42, 44, 101, 296, 531
BccI	CCATC	2 cut(s)	233, 736
BciVI	GTATCC	1 cut(s)	894
BcnI	CCSGG	1 cut(s)	70
BcoDI	GTCTC	4 cut(s)	348, 930, 997, 1047
BcuI	ACTAGT	1 cut(s)	874
BfaI	CTAG	3 cut(s)	176, 636, 875
BfoI	RGCGCY	1 cut(s)	134
BfuAI	ACCTGC	2 cut(s)	443, 626
BfuI	GTATCC	1 cut(s)	894
BglI	GCCNNNNNGGC	1 cut(s)	489
BisI	GCNGC	7 cut(s)	33, 56, 115, 310, 520, 766, 960
BlsI	GCNGC	7 cut(s)	34, 57, 116, 311, 521, 767, 961
Bme1390I	CCNGG	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	767
BmrFI	CCNGG	1 cut(s)	70
BmsI	GCATC	1 cut(s)	19
BpiI	GAAGAC	1 cut(s)	11
Bpu10I	CCTNAGC	2 cut(s)	330, 515
BpuMI	CCSGG	1 cut(s)	70
BsaAI	YACGTR	1 cut(s)	1015
BsaHI	GRCGYC	2 cut(s)	284, 858
BsaI	GGTCTC	2 cut(s)	930, 997
BsaJI	CCNNGG	2 cut(s)	69, 763
BsaWI	WCCGGW	4 cut(s)	879, 886, 900, 921
Bsc4I	CCNNNNNNNGG	4 cut(s)	302, 886, 914, 969
Bse118I	RCCGGY	4 cut(s)	295, 900, 921, 962
Bse1I	ACTGG	1 cut(s)	943
Bse3DI	GCAATG	1 cut(s)	260
BseAI	TCCGGA	1 cut(s)	886
BseDI	CCNNGG	2 cut(s)	69, 763
BseGI	GGATG	2 cut(s)	34, 525
BseLI	CCNNNNNNNGG	4 cut(s)	302, 886, 914, 969
BseMI	GCAATG	1 cut(s)	260
BseMII	CTCAG	3 cut(s)	321, 529, 606
BseNI	ACTGG	1 cut(s)	943
BseRI	GAGGAG	1 cut(s)	458
BseSI	GKGCMC	3 cut(s)	107, 213, 697
BseX3I	CGGCCG	1 cut(s)	960
BseXI	GCAGC	5 cut(s)	42, 44, 101, 296, 531
BseYI	CCCAGC	3 cut(s)	117, 138, 279
BsgI	GTGCAG	3 cut(s)	146, 181, 415
Bsh1236I	CGCG	1 cut(s)	765
Bsh1285I	CGRYCG	1 cut(s)	963
BshFI	GGCC	5 cut(s)	50, 295, 768, 962, 966
BshTI	ACCGGT	2 cut(s)	900, 921
BsiEI	CGRYCG	1 cut(s)	963
BsiHKAI	GWGCWC	2 cut(s)	260, 697
BsiSI	CCGG	9 cut(s)	69, 296, 861, 880, 887, 901, 922, 963, 984
BslFI	GGGAC	2 cut(s)	193, 587
BslI	CCNNNNNNNGG	4 cut(s)	302, 886, 914, 969
BsmAI	GTCTC	4 cut(s)	348, 930, 997, 1047
BsmFI	GGGAC	2 cut(s)	193, 587
BsnI	GGCC	5 cut(s)	50, 295, 768, 962, 966
Bso31I	GGTCTC	2 cut(s)	930, 997
Bsp1286I	GDGCHC	4 cut(s)	107, 213, 260, 697
Bsp13I	TCCGGA	1 cut(s)	886
Bsp143I	GATC	4 cut(s)	288, 400, 745, 869
BspANI	GGCC	5 cut(s)	50, 295, 768, 962, 966
BspCNI	CTCAG	3 cut(s)	322, 528, 605
BspEI	TCCGGA	1 cut(s)	886
BspFNI	CGCG	1 cut(s)	765
BspMI	ACCTGC	2 cut(s)	443, 626
BspPI	GGATC	1 cut(s)	753
BspQI	GCTCTTC	1 cut(s)	272
BspTNI	GGTCTC	2 cut(s)	930, 997
BsrBI	CCGCTC	1 cut(s)	508
BsrDI	GCAATG	1 cut(s)	260
BsrFI	RCCGGY	4 cut(s)	295, 900, 921, 962
BsrI	ACTGG	1 cut(s)	943
BssAI	RCCGGY	4 cut(s)	295, 900, 921, 962
BssECI	CCNNGG	2 cut(s)	69, 763
BssMI	GATC	4 cut(s)	288, 400, 745, 869
BssNI	GRCGYC	2 cut(s)	284, 858
Bst6I	CTCTTC	1 cut(s)	272
BstACI	GRCGYC	2 cut(s)	284, 858
BstAPI	GCANNNNNTGC	1 cut(s)	111
BstBAI	YACGTR	1 cut(s)	1015
BstDEI	CTNAG	3 cut(s)	330, 515, 592
BstDSI	CCRYGG	1 cut(s)	763
BstEII	GGTNACC	2 cut(s)	917, 938
BstF5I	GGATG	2 cut(s)	34, 525
BstFNI	CGCG	1 cut(s)	765
BstH2I	RGCGCY	1 cut(s)	134
BstHHI	GCGC	6 cut(s)	45, 133, 156, 197, 319, 615
BstKTI	GATC	4 cut(s)	291, 403, 748, 872
BstMAI	GTCTC	4 cut(s)	348, 930, 997, 1047
BstMBI	GATC	4 cut(s)	288, 400, 745, 869
BstMCI	CGRYCG	1 cut(s)	963
BstMWI	GCNNNNNNNGC	8 cut(s)	111, 168, 172, 181, 489, 757, 762, 816
BstPI	GGTNACC	2 cut(s)	917, 938
BstSCI	CCNGG	1 cut(s)	68
BstSLI	GKGCMC	3 cut(s)	107, 213, 697
BstUI	CGCG	1 cut(s)	765
BstV1I	GCAGC	5 cut(s)	42, 44, 101, 296, 531
BstV2I	GAAGAC	1 cut(s)	11
BstZI	CGGCCG	1 cut(s)	960
BsuI	GTATCC	1 cut(s)	894
BsuRI	GGCC	5 cut(s)	50, 295, 768, 962, 966
BtgI	CCRYGG	1 cut(s)	763
BtgZI	GCGATG	1 cut(s)	616
BtsCI	GGATG	2 cut(s)	34, 525
BtsIMutI	CAGTG	1 cut(s)	695
BveI	ACCTGC	2 cut(s)	443, 626
CaiI	CAGNNNCTG	3 cut(s)	133, 914, 956
CfoI	GCGC	6 cut(s)	45, 133, 156, 197, 319, 615
Cfr10I	RCCGGY	4 cut(s)	295, 900, 921, 962
Cfr13I	GGNCC	1 cut(s)	767
Cfr42I	CCGCGG	1 cut(s)	766
CseI	GACGC	6 cut(s)	5, 190, 273, 511, 589, 866
CspAI	ACCGGT	2 cut(s)	900, 921
CspCI	CAANNNNNGTGG	2 cut(s)	518, 553
DdeI	CTNAG	3 cut(s)	330, 515, 592
DpnI	GATC	4 cut(s)	290, 402, 747, 871
DpnII	GATC	4 cut(s)	288, 400, 745, 869
DraIII	CACNNNGTG	1 cut(s)	111
EaeI	YGGCCR	3 cut(s)	293, 960, 964
EagI	CGGCCG	1 cut(s)	960
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
EciI	GGCGGA	1 cut(s)	181
EclXI	CGGCCG	1 cut(s)	960
Eco31I	GGTCTC	2 cut(s)	930, 997
Eco52I	CGGCCG	1 cut(s)	960
Eco91I	GGTNACC	2 cut(s)	917, 938
EcoO65I	GGTNACC	2 cut(s)	917, 938
EcoRI	GAATTC	1 cut(s)	931
FaiI	YATR	2 cut(s)	152, 447
FaqI	GGGAC	2 cut(s)	193, 587
FauI	CCCGC	2 cut(s)	83, 513
FblI	GTMKAC	1 cut(s)	450
Fnu4HI	GCNGC	7 cut(s)	33, 56, 115, 310, 520, 766, 960
FokI	GGATG	2 cut(s)	41, 512
FseI	GGCCGGCC	1 cut(s)	966
Fsp4HI	GCNGC	7 cut(s)	33, 56, 115, 310, 520, 766, 960
FspBI	CTAG	3 cut(s)	176, 636, 875
GlaI	GCGC	6 cut(s)	44, 132, 155, 196, 318, 614
GluI	GCNGC	7 cut(s)	33, 56, 115, 310, 520, 766, 960
GsaI	CCCAGC	3 cut(s)	121, 142, 283
HaeII	RGCGCY	1 cut(s)	134
HaeIII	GGCC	5 cut(s)	50, 295, 768, 962, 966
HapII	CCGG	9 cut(s)	69, 296, 861, 880, 887, 901, 922, 963, 984
HgaI	GACGC	6 cut(s)	5, 190, 273, 511, 589, 866
HhaI	GCGC	6 cut(s)	45, 133, 156, 197, 319, 615
Hin1I	GRCGYC	2 cut(s)	284, 858
Hin6I	GCGC	6 cut(s)	43, 131, 154, 195, 317, 613
HinP1I	GCGC	6 cut(s)	43, 131, 154, 195, 317, 613
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HinfI	GANTC	7 cut(s)	542, 590, 647, 864, 911, 953, 980
HpaII	CCGG	9 cut(s)	69, 296, 861, 880, 887, 901, 922, 963, 984
HphI	GGTGA	3 cut(s)	911, 932, 939
Hpy166II	GTNNAC	2 cut(s)	451, 695
Hpy188I	TCNGA	7 cut(s)	595, 741, 856, 869, 930, 979, 997
Hpy188III	TCNNGA	2 cut(s)	26, 887
Hpy8I	GTNNAC	2 cut(s)	451, 695
Hpy99I	CGWCG	1 cut(s)	289
HpyAV	CCTTC	2 cut(s)	488, 832
HpyCH4IV	ACGT	3 cut(s)	624, 668, 1014
HpyF10VI	GCNNNNNNNGC	8 cut(s)	111, 168, 172, 181, 489, 757, 762, 816
HpyF3I	CTNAG	3 cut(s)	330, 515, 592
HpySE526I	ACGT	3 cut(s)	624, 668, 1014
Hsp92I	GRCGYC	2 cut(s)	284, 858
HspAI	GCGC	6 cut(s)	43, 131, 154, 195, 317, 613
Kpn2I	TCCGGA	1 cut(s)	886
KroI	GCCGGC	2 cut(s)	295, 962
KroNI	GCCGGC	2 cut(s)	297, 964
KspI	CCGCGG	1 cut(s)	766
Kzo9I	GATC	4 cut(s)	288, 400, 745, 869
LguI	GCTCTTC	1 cut(s)	272
LmnI	GCTCC	2 cut(s)	168, 765
Lsp1109I	GCAGC	5 cut(s)	42, 44, 101, 296, 531
LweI	GCATC	1 cut(s)	19
MaeI	CTAG	3 cut(s)	176, 636, 875
MaeII	ACGT	3 cut(s)	624, 668, 1014
MaeIII	GTNAC	4 cut(s)	917, 938, 945, 1015
MalI	GATC	4 cut(s)	290, 402, 747, 871
MbiI	CCGCTC	1 cut(s)	508
MboI	GATC	4 cut(s)	288, 400, 745, 869
MfeI	CAATTG	1 cut(s)	733
MhlI	GDGCHC	4 cut(s)	107, 213, 260, 697
MluCI	AATT	4 cut(s)	727, 733, 813, 931
MlyI	GAGTC	4 cut(s)	536, 584, 962, 989
MmeI	TCCRAC	1 cut(s)	570
MroI	TCCGGA	1 cut(s)	886
MroNI	GCCGGC	2 cut(s)	295, 962
MseI	TTAA	1 cut(s)	726
MslI	CAYNNNNRTG	1 cut(s)	444
MspA1I	CMGCKG	1 cut(s)	765
MspI	CCGG	9 cut(s)	69, 296, 861, 880, 887, 901, 922, 963, 984
MspR9I	CCNGG	1 cut(s)	70
MunI	CAATTG	1 cut(s)	733
MvnI	CGCG	1 cut(s)	765
MwoI	GCNNNNNNNGC	8 cut(s)	111, 168, 172, 181, 489, 757, 762, 816
NaeI	GCCGGC	2 cut(s)	297, 964
NciI	CCSGG	1 cut(s)	70
NdeII	GATC	4 cut(s)	288, 400, 745, 869
NgoMIV	GCCGGC	2 cut(s)	295, 962
NmeAIII	GCCGAG	1 cut(s)	76
NmuCI	GTSAC	4 cut(s)	917, 938, 945, 1015
PaqCI	CACCTGC	2 cut(s)	443, 626
PciSI	GCTCTTC	1 cut(s)	272
PcsI	WCGNNNNNNNCGW	1 cut(s)	537
PdiI	GCCGGC	2 cut(s)	297, 964
PfeI	GAWTC	3 cut(s)	647, 864, 911
PflMI	CCANNNNNTGG	1 cut(s)	914
PinAI	ACCGGT	2 cut(s)	900, 921
PkrI	GCNGC	7 cut(s)	34, 57, 116, 311, 521, 767, 961
PleI	GAGTC	4 cut(s)	536, 584, 961, 988
PpsI	GAGTC	4 cut(s)	536, 584, 961, 988
Ppu21I	YACGTR	1 cut(s)	1015
PspEI	GGTNACC	2 cut(s)	917, 938
PspFI	CCCAGC	3 cut(s)	117, 138, 279
PspPI	GGNCC	1 cut(s)	767
PstNI	CAGNNNCTG	3 cut(s)	133, 914, 956
RigI	GGCCGGCC	1 cut(s)	966
RseI	CAYNNNNRTG	1 cut(s)	444
SacII	CCGCGG	1 cut(s)	766
SalI	GTCGAC	1 cut(s)	449
SapI	GCTCTTC	1 cut(s)	272
SaqAI	TTAA	1 cut(s)	726
SatI	GCNGC	7 cut(s)	33, 56, 115, 310, 520, 766, 960
Sau3AI	GATC	4 cut(s)	288, 400, 745, 869
Sau96I	GGNCC	1 cut(s)	767
SchI	GAGTC	4 cut(s)	536, 584, 962, 989
ScrFI	CCNGG	1 cut(s)	70
SduI	GDGCHC	4 cut(s)	107, 213, 260, 697
SfaNI	GCATC	1 cut(s)	19
Sfr303I	CCGCGG	1 cut(s)	766
SgrBI	CCGCGG	1 cut(s)	766
SmiMI	CAYNNNNRTG	1 cut(s)	444
SpeI	ACTAGT	1 cut(s)	874
Sse9I	AATT	4 cut(s)	727, 733, 813, 931
SspMI	CTAG	3 cut(s)	176, 636, 875
StyD4I	CCNGG	1 cut(s)	68
TaiI	ACGT	3 cut(s)	627, 671, 1017
TaqI	TCGA	5 cut(s)	287, 450, 555, 645, 894
TasI	AATT	4 cut(s)	727, 733, 813, 931
TauI	GCSGC	2 cut(s)	768, 962
TfiI	GAWTC	3 cut(s)	647, 864, 911
Tru1I	TTAA	1 cut(s)	726
Tru9I	TTAA	1 cut(s)	726
TscAI	CASTG	1 cut(s)	702
TseFI	GTSAC	4 cut(s)	917, 938, 945, 1015
TseI	GCWGC	5 cut(s)	32, 55, 114, 309, 519
Tsp45I	GTSAC	4 cut(s)	917, 938, 945, 1015
TspDTI	ATGAA	1 cut(s)	812
TspRI	CASTG	1 cut(s)	702
Van91I	CCANNNNNTGG	1 cut(s)	914
VneI	GTGCAC	1 cut(s)	693
XapI	RAATTY	1 cut(s)	931
XmiI	GTMKAC	1 cut(s)	450
XspI	CTAG	3 cut(s)	176, 636, 875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.