Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006735

Physical Location & Seq

Genomic Coordinates Forward (+)

1250853 .. 1253828

Gene Structure 2976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG016600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2097 bp

ATGTTCCTCACAACTCTCCCATCCACCAAAACCCCAATCACCCCCAAAACCCTGACCATCCCTCTCACCTTCTTCTTCTTCACACACACCACCTCACCCTCTCACCACGAACAACCCCAAAACCAGCTCGACCAAATAAGCATAGACAACACACCATACTGGACCAAAACCATCCACGACCTCTGCACCCGCCACCGCAATGTCGACCAAGCCCTCCACCTCCTCGACCACCTCCGCCTCCGTGGCTACCGCCCCAACCCGCTCAACCTCAGCAGCATCATCCACGCCCTCTGCGACTCCAACCGCTTCCAAGAAGCCCACCATCGCTTCGCCCACTCCATCGACTCAGACTGCGTCCCTGACCAGCGCACCTGCAACGTCATCATCGCTCGGCTACTCGATTCGGAAACCCCGCACAGCACGTTGGGTGTTCTTCGCGTTTTGAGTCCACTGAAGCCTGATTTTGTAGCCTCTTTGGTTAATTACAACCGTCTGATGGATCAGCTCTGCTCGCTCCGGCGGCCCAGTGAGGCTCATAGAGTGTTGTTTGACATGCTTATTAGAGGGCATTGCCCCAACGCGGTTTCTTACACTACATTGATTAACGGGTACTGCGGCGTTGGCGAGTTGGGTAATGCACACAAGGTGTTTGATGAAATGTGTGAGAGGGGTGCAGCGCCTAATTCGATGACTTATAGTGTGTTGATCCGTGGCGTTCTTCGGAAGCGGGATATTGGGGGTGCTATGGAATTGATGGGAAGATTGTGGGAGACAATGAAGGGTGAAGAGGACACACTTGTGAAAAATGCGGCATTCTCGAATTTGATTGATTCTATGTGTAGAGAAAAGTATTTTCAAGAGGTTTTCGGTATTGCAGAAGATAGGCCACAGGGGGAGAGTGTGAATGAGGAGTTTGCTTATGGACAGATGATAGATTCGCTTTGTATAGCCGGAAGGCATCATGGGGCGTCGAGAATTGTGTACATCATGAGGCATAGAGGGTTTGTTCCACGCATAACGTCGTATAATTGTATCATACATGGACTGAGCAAGGAGGGGGAGGGAGGTTGTATGAGAGCTTATCAGTTGTTGGAGGAAGGGATTGAGTTTGGTTACTTGCCGTCTGAGTACACTTACAAGGTTCTAGTGGAAGGTCTTTGCCAAGAATCCGACGTTGACAAGGCGCGGCAGGTTCTTCAATATATGTTAAAGAAGGAAAGAGTGGACAAAACCAGGATGTATAATATATATTTGAGAGCTCTATGTCTTGTTAATAACACGACTGAGCTTTTGAATGTGCTTGTTTCGATGCTCCAGACCGAGTGTCAGCCTGATGTGATCACCCTAAACATAGTTGTCAACGGGTTCTGCAAGATGGGGAGAGTGGAAGAAGCTTTAAAGGTACTGGATGATATGATGACTGGAAAATTTTGTGCGCCGAATGTAGTGACCTTCACAACTATCATTAATGGTTTGTTAAATGTTGGTAGAACGCAAGAAGCTCTTGGTATGTTGCGTGATGTAATGCCTCAGAAAGGCTTTCGCCCTAATGTTGTGACATATAATGCAATTCTTCGTGGTTTGTTTAAACTTAATCAAGGAAGGGAAGCAATGGAGATTTTCAATGGCATGGTAACTGAGAGTGTGGCTGCTGATAGTACCACTTACACAATTATAATTGATGGGTTATGTGAGTCTGATCAGCTAGAAGAGGCTAAGAGGTTCTGGGATGAGGTTATTTGGCCCTCACAGATCCATGACAATTTTGTATATGCAGCCATCATCAAAGGGATTTGCCATTCAGGAAATTTTGATGAGGCATGTCATTTCCTCTACGAACTTGTAGACTCTGGGGTCTGTCCGAATATATTCAGTTACAACATTGTGATCGACACTGCTTACAAACTAGGTCTGAAGAAAGAGGCATATGAAGTTGTAAGAGAGATGAGAAGAAATGGGCTGGCTCCAGATTCTGTAACTTGGAGGATTCTTGACAAGTTACACGGCAACTCAAGAAAACAATATGGGGATGATGAGGCTTCAACTTTGCAATTCGGGAAGTGGACCGCATGGATAGGTGAACAGGAAAATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

698

Amino Acids

79.29

Weight (kDa)

6.05

Isoelectric Point (pI)

33.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	159 - 205	7.3e-11	PPR repeat family
PPR_3	PF13812	181 - 236	9.8e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	188 - 220	2.2e-11	PPR repeat
PPR_2	PF13041	192 - 239	1.6e-16	PPR repeat family
PPR	PF01535	195 - 224	6.8e-07	PPR repeat
PPR_2	PF13041	337 - 388	5.6e-07	PPR repeat family
PPR_1	PF12854	371 - 402	1.3e-06	PPR repeat
PPR_2	PF13041	413 - 458	3.3e-07	PPR repeat family
PPR_1	PF12854	441 - 472	6.6e-13	PPR repeat
PPR_2	PF13041	444 - 493	8e-14	PPR repeat family
PPR	PF01535	447 - 473	3.7e-06	PPR repeat
PPR_2	PF13041	480 - 530	1.1e-12	PPR repeat family
PPR_3	PF13812	508 - 560	4.8e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	512 - 545	4.8e-06	PPR repeat
PPR_2	PF13041	516 - 564	7.7e-16	PPR repeat family
PPR_1	PF12854	551 - 578	7.8e-06	PPR repeat
PPR_2	PF13041	587 - 632	2.3e-08	PPR repeat family
PPR_2	PF13041	621 - 664	1.7e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0006735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18020
fragaria_vesca	FvH4_5g17250
malus_domestica	MD06G1231100.v1.1
prunus_persica	Prupe.5G232400_v2.0.a1
pyrus_communis	pycom06g20240
rosa_chinensis	RchiOBHm_Chr7g0178541
rosa_laevigata	RLG00000005439 RLG00000010173
rosa_multiflora	Rmu_sc0000775.1_g000015 Rmu_sc0000961.1_g000015 Rmu_sc0002421.1_g000004 Rmu_sc0003637.1_g000006 Rmu_sc0011483.1_g000001 Rmu_sc0016060.1_g000005 Rmu_ssc0000343.1_g000033
rosa_roxburghii	Rroxscaffold_3G00274830 Rroxscaffold_5G00333820
rosa_rugosa	Rorug06G0417900
rosa_samantha	Rh3CG367500 Rh4AG426400 Rh4DG434700 Rh7AG016400 Rh7BG015900 Rh7CG016600 Rh7DG016500
rosa_wichuraiana	Rw7G001300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1676
AarI	CACCTGC	1 cut(s)	380
AasI	GACNNNNNNGTC	1 cut(s)	1853
Acc36I	ACCTGC	2 cut(s)	380, 1180
AccBSI	CCGCTC	1 cut(s)	262
AccI	GTMKAC	2 cut(s)	204, 1845
AccII	CGCG	3 cut(s)	438, 581, 1186
AclWI	GGATC	3 cut(s)	507, 700, 1747
AcsI	RAATTY	3 cut(s)	820, 1427, 1807
AcuI	CTGAAG	2 cut(s)	473, 1934
AcyI	GRCGYC	1 cut(s)	968
AdeI	CACNNNGTG	1 cut(s)	646
AfaI	GTAC	5 cut(s)	611, 983, 1130, 1404, 1660
AfiI	CCNNNNNNNGG	3 cut(s)	496, 580, 1535
AgsI	TTSAA	5 cut(s)	857, 1199, 1294, 1624, 2043
AhdI	GACNNNNNGTC	1 cut(s)	1323
AjnI	CCWGG	1 cut(s)	1232
AleI	CACNNNNGTG	1 cut(s)	797
AluBI	AGCT	8 cut(s)	127, 505, 1079, 1259, 1288, 1394, 1502, 1705
AluI	AGCT	8 cut(s)	127, 505, 1079, 1259, 1288, 1394, 1502, 1705
Alw21I	GWGCWC	1 cut(s)	1261
Alw26I	GTCTC	1 cut(s)	764
AlwI	GGATC	3 cut(s)	507, 700, 1747
AlwNI	CAGNNNCTG	1 cut(s)	1973
AoxI	GGCC	3 cut(s)	521, 884, 1742
ApeKI	GCWGC	4 cut(s)	273, 674, 1649, 1775
ApoI	RAATTY	3 cut(s)	820, 1427, 1807
ArsI	GACNNNNNNTTYG	2 cut(s)	1273, 1305
AseI	ATTAAT	1 cut(s)	1467
Asp700I	GAANNNNTTC	1 cut(s)	1868
AspLEI	GCGC	4 cut(s)	369, 679, 1186, 1438
AspS9I	GGNCC	4 cut(s)	162, 522, 1743, 2064
AsuHPI	GGTGA	7 cut(s)	31, 58, 87, 95, 794, 1333, 2090
AvaII	GGWCC	2 cut(s)	162, 2064
BanII	GRGCYC	1 cut(s)	1261
Bbv12I	GWGCWC	1 cut(s)	1261
BbvCI	CCTCAGC	1 cut(s)	269
BbvI	GCAGC	4 cut(s)	285, 686, 1636, 1787
BceAI	ACGGC	2 cut(s)	1105, 2020
BciT130I	CCWGG	1 cut(s)	1234
BclI	TGATCA	2 cut(s)	1338, 1699
BcoDI	GTCTC	1 cut(s)	764
BfaI	CTAG	3 cut(s)	1145, 1706, 1907
BfoI	RGCGCY	1 cut(s)	680
BfuAI	ACCTGC	2 cut(s)	380, 1180
BglI	GCCNNNNNGGC	1 cut(s)	243
BisI	GCNGC	8 cut(s)	274, 521, 616, 675, 810, 1187, 1650, 1776
BlsI	GCNGC	8 cut(s)	275, 522, 617, 676, 811, 1188, 1651, 1777
Bme1390I	CCNGG	1 cut(s)	1234
Bme18I	GGWCC	2 cut(s)	162, 2064
BmeRI	GACNNNNNGTC	1 cut(s)	1323
BmgT120I	GGNCC	4 cut(s)	162, 522, 1743, 2064
BmiI	GGNNCC	1 cut(s)	1965
BmrFI	CCNGG	1 cut(s)	1234
BmrI	ACTGGG	1 cut(s)	519
BmsI	GCATC	3 cut(s)	285, 967, 1299
BmuI	ACTGGG	1 cut(s)	519
BpmI	CTGGAG	2 cut(s)	1298, 1950
Bpu10I	CCTNAGC	1 cut(s)	269
BpuEI	CTTGAG	1 cut(s)	1996
BsaHI	GRCGYC	1 cut(s)	968
BsaJI	CCNNGG	2 cut(s)	241, 709
Bsc4I	CCNNNNNNNGG	3 cut(s)	496, 580, 1535
Bse1I	ACTGG	4 cut(s)	164, 525, 1410, 1426
Bse3DI	GCAATG	3 cut(s)	205, 568, 1617
BseBI	CCWGG	1 cut(s)	1234
BseDI	CCNNGG	2 cut(s)	241, 709
BseGI	GGATG	8 cut(s)	20, 57, 171, 279, 1242, 1414, 1735, 2035
BseLI	CCNNNNNNNGG	3 cut(s)	496, 580, 1535
BseMI	GCAATG	3 cut(s)	205, 568, 1617
BseMII	CTCAG	7 cut(s)	283, 360, 1037, 1116, 1275, 1544, 1629
BseNI	ACTGG	4 cut(s)	164, 525, 1410, 1426
BseRI	GAGGAG	2 cut(s)	212, 923
BseXI	GCAGC	4 cut(s)	285, 686, 1636, 1787
BsgI	GTGCAG	2 cut(s)	169, 693
Bsh1236I	CGCG	3 cut(s)	438, 581, 1186
BshFI	GGCC	3 cut(s)	523, 886, 1744
BsiHKAI	GWGCWC	1 cut(s)	1261
BsiSI	CCGG	2 cut(s)	517, 951
BslFI	GGGAC	1 cut(s)	341
BslI	CCNNNNNNNGG	3 cut(s)	496, 580, 1535
BsmAI	GTCTC	1 cut(s)	764
BsmFI	GGGAC	1 cut(s)	341
BsmI	GAATGC	1 cut(s)	812
BsnI	GGCC	3 cut(s)	523, 886, 1744
Bsp1286I	GDGCHC	1 cut(s)	1261
Bsp1407I	TGTACA	1 cut(s)	981
Bsp143I	GATC	6 cut(s)	499, 705, 1338, 1699, 1752, 1887
BspANI	GGCC	3 cut(s)	523, 886, 1744
BspCNI	CTCAG	7 cut(s)	282, 359, 1038, 1117, 1276, 1543, 1630
BspFNI	CGCG	3 cut(s)	438, 581, 1186
BspHI	TCATGA	1 cut(s)	987
BspLI	GGNNCC	1 cut(s)	1965
BspMI	ACCTGC	2 cut(s)	380, 1180
BspPI	GGATC	3 cut(s)	507, 700, 1747
BsrBI	CCGCTC	1 cut(s)	262
BsrDI	GCAATG	3 cut(s)	205, 568, 1617
BsrGI	TGTACA	1 cut(s)	981
BsrI	ACTGG	4 cut(s)	164, 525, 1410, 1426
BssECI	CCNNGG	2 cut(s)	241, 709
BssMI	GATC	6 cut(s)	499, 705, 1338, 1699, 1752, 1887
BssNI	GRCGYC	1 cut(s)	968
Bst2UI	CCWGG	1 cut(s)	1234
Bst4CI	ACNGT	1 cut(s)	491
Bst6I	CTCTTC	2 cut(s)	780, 1704
BstACI	GRCGYC	1 cut(s)	968
BstAUI	TGTACA	1 cut(s)	981
BstC8I	GCNNGC	2 cut(s)	512, 1962
BstDEI	CTNAG	8 cut(s)	269, 346, 1046, 1125, 1284, 1530, 1638, 1716
BstDSI	CCRYGG	2 cut(s)	241, 709
BstENI	CCTNNNNNAGG	1 cut(s)	1533
BstF5I	GGATG	8 cut(s)	20, 57, 171, 279, 1242, 1414, 1735, 2035
BstFNI	CGCG	3 cut(s)	438, 581, 1186
BstH2I	RGCGCY	1 cut(s)	680
BstHHI	GCGC	4 cut(s)	369, 679, 1186, 1438
BstKTI	GATC	6 cut(s)	502, 708, 1341, 1702, 1755, 1890
BstMAI	GTCTC	1 cut(s)	764
BstMBI	GATC	6 cut(s)	499, 705, 1338, 1699, 1752, 1887
BstMWI	GCNNNNNNNGC	4 cut(s)	243, 511, 520, 621
BstNI	CCWGG	1 cut(s)	1234
BstNSI	RCATGY	2 cut(s)	556, 1824
BstSCI	CCNGG	1 cut(s)	1232
BstUI	CGCG	3 cut(s)	438, 581, 1186
BstV1I	GCAGC	4 cut(s)	285, 686, 1636, 1787
BstX2I	RGATCY	1 cut(s)	1752
BstYI	RGATCY	1 cut(s)	1752
BsuRI	GGCC	3 cut(s)	523, 886, 1744
BtgI	CCRYGG	2 cut(s)	241, 709
BtgZI	GCGATG	2 cut(s)	308, 370
BtsCI	GGATG	8 cut(s)	20, 57, 171, 279, 1242, 1414, 1735, 2035
BtsI	GCAGTG	1 cut(s)	1893
BtsIMutI	CAGTG	3 cut(s)	449, 532, 1893
BveI	ACCTGC	2 cut(s)	380, 1180
Cac8I	GCNNGC	2 cut(s)	512, 1962
CaiI	CAGNNNCTG	1 cut(s)	1973
CciI	TCATGA	1 cut(s)	987
CfoI	GCGC	4 cut(s)	369, 679, 1186, 1438
Cfr13I	GGNCC	4 cut(s)	162, 522, 1743, 2064
CseI	GACGC	2 cut(s)	343, 957
Csp6I	GTAC	5 cut(s)	610, 982, 1129, 1403, 1659
CviAII	CATG	8 cut(s)	553, 962, 988, 1040, 1630, 1757, 1821, 2070
CviQI	GTAC	5 cut(s)	610, 982, 1129, 1403, 1659
DdeI	CTNAG	8 cut(s)	269, 346, 1046, 1125, 1284, 1530, 1638, 1716
DpnI	GATC	6 cut(s)	501, 707, 1340, 1701, 1754, 1889
DpnII	GATC	6 cut(s)	499, 705, 1338, 1699, 1752, 1887
DraI	TTTAAA	2 cut(s)	1398, 1588
DraIII	CACNNNGTG	1 cut(s)	646
DrdI	GACNNNNNNGTC	1 cut(s)	1853
DriI	GACNNNNNGTC	1 cut(s)	1323
DseDI	GACNNNNNNGTC	1 cut(s)	1853
Eam1104I	CTCTTC	2 cut(s)	780, 1704
Eam1105I	GACNNNNNGTC	1 cut(s)	1323
EarI	CTCTTC	2 cut(s)	780, 1704
EciI	GGCGGA	1 cut(s)	224
Ecl136II	GAGCTC	1 cut(s)	1259
Eco24I	GRGCYC	1 cut(s)	1261
Eco47I	GGWCC	2 cut(s)	162, 2064
Eco53kI	GAGCTC	1 cut(s)	1259
Eco57I	CTGAAG	2 cut(s)	473, 1934
EcoICRI	GAGCTC	1 cut(s)	1259
EcoNI	CCTNNNNNAGG	1 cut(s)	1533
EcoRII	CCWGG	1 cut(s)	1232
EcoT38I	GRGCYC	1 cut(s)	1261
FaeI	CATG	8 cut(s)	556, 965, 991, 1043, 1633, 1760, 1824, 2073
FalI	AAGNNNNNCTT	2 cut(s)	1488, 1520
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	8 cut(s)	552, 961, 987, 1039, 1629, 1756, 1820, 2069
FauI	CCCGC	4 cut(s)	197, 267, 420, 720
FauNDI	CATATG	1 cut(s)	1927
FbaI	TGATCA	2 cut(s)	1338, 1699
FblI	GTMKAC	2 cut(s)	204, 1845
Fnu4HI	GCNGC	8 cut(s)	274, 521, 616, 675, 810, 1187, 1650, 1776
FokI	GGATG	8 cut(s)	7, 44, 158, 266, 1249, 1421, 1742, 2042
FriOI	GRGCYC	1 cut(s)	1261
Fsp4HI	GCNGC	8 cut(s)	274, 521, 616, 675, 810, 1187, 1650, 1776
FspBI	CTAG	3 cut(s)	1145, 1706, 1907
GlaI	GCGC	4 cut(s)	368, 678, 1185, 1437
GluI	GCNGC	8 cut(s)	274, 521, 616, 675, 810, 1187, 1650, 1776
GsuI	CTGGAG	2 cut(s)	1298, 1950
HaeII	RGCGCY	1 cut(s)	680
HaeIII	GGCC	3 cut(s)	523, 886, 1744
HapII	CCGG	2 cut(s)	517, 951
HgaI	GACGC	2 cut(s)	343, 957
HhaI	GCGC	4 cut(s)	369, 679, 1186, 1438
Hin1I	GRCGYC	1 cut(s)	968
Hin1II	CATG	8 cut(s)	556, 965, 991, 1043, 1633, 1760, 1824, 2073
Hin6I	GCGC	4 cut(s)	367, 677, 1184, 1436
HinP1I	GCGC	4 cut(s)	367, 677, 1184, 1436
HincII	GTYRAC	3 cut(s)	205, 1177, 1360
HindII	GTYRAC	3 cut(s)	205, 1177, 1360
HindIII	AAGCTT	1 cut(s)	1392
HpaII	CCGG	2 cut(s)	517, 951
HphI	GGTGA	7 cut(s)	31, 58, 87, 95, 794, 1333, 2090
Hpy99I	CGWCG	3 cut(s)	973, 1024, 1175
HpyAV	CCTTC	8 cut(s)	79, 772, 948, 1091, 1145, 1207, 1462, 1596
HpyCH4III	ACNGT	1 cut(s)	491
HpyCH4IV	ACGT	4 cut(s)	378, 422, 1019, 1173
HpyCH4V	TGCA	9 cut(s)	186, 375, 638, 674, 875, 1371, 1568, 1775, 2050
HpyF10VI	GCNNNNNNNGC	4 cut(s)	243, 511, 520, 621
HpyF3I	CTNAG	8 cut(s)	269, 346, 1046, 1125, 1284, 1530, 1638, 1716
HpySE526I	ACGT	4 cut(s)	378, 422, 1019, 1173
Hsp92I	GRCGYC	1 cut(s)	968
Hsp92II	CATG	8 cut(s)	556, 965, 991, 1043, 1633, 1760, 1824, 2073
HspAI	GCGC	4 cut(s)	367, 677, 1184, 1436
Ksp22I	TGATCA	2 cut(s)	1338, 1699
Kzo9I	GATC	6 cut(s)	499, 705, 1338, 1699, 1752, 1887
LmnI	GCTCC	3 cut(s)	519, 1317, 1969
Lsp1109I	GCAGC	4 cut(s)	285, 686, 1636, 1787
LweI	GCATC	3 cut(s)	285, 967, 1299
MaeI	CTAG	3 cut(s)	1145, 1706, 1907
MaeII	ACGT	4 cut(s)	378, 422, 1019, 1173
MaeIII	GTNAC	7 cut(s)	1112, 1447, 1555, 1633, 1874, 1975, 1998
MalI	GATC	6 cut(s)	501, 707, 1340, 1701, 1754, 1889
MbiI	CCGCTC	1 cut(s)	262
MboI	GATC	6 cut(s)	499, 705, 1338, 1699, 1752, 1887
MflI	RGATCY	1 cut(s)	1752
MhlI	GDGCHC	1 cut(s)	1261
MlyI	GAGTC	5 cut(s)	290, 338, 454, 1703, 1841
MmeI	TCCRAC	3 cut(s)	324, 1071, 1194
MroXI	GAANNNNTTC	1 cut(s)	1868
MseI	TTAA	9 cut(s)	480, 603, 1208, 1272, 1397, 1467, 1478, 1587, 1593
MslI	CAYNNNNRTG	2 cut(s)	198, 797
MspI	CCGG	2 cut(s)	517, 951
MspR9I	CCNGG	1 cut(s)	1234
MssI	GTTTAAAC	1 cut(s)	1588
Mva1269I	GAATGC	1 cut(s)	812
MvaI	CCWGG	1 cut(s)	1234
MvnI	CGCG	3 cut(s)	438, 581, 1186
MwoI	GCNNNNNNNGC	4 cut(s)	243, 511, 520, 621
NdeI	CATATG	1 cut(s)	1927
NdeII	GATC	6 cut(s)	499, 705, 1338, 1699, 1752, 1887
NlaIII	CATG	8 cut(s)	556, 965, 991, 1043, 1633, 1760, 1824, 2073
NlaIV	GGNNCC	1 cut(s)	1965
NmeAIII	GCCGAG	1 cut(s)	370
NmuCI	GTSAC	2 cut(s)	1447, 1555
NspI	RCATGY	2 cut(s)	556, 1824
OliI	CACNNNNGTG	1 cut(s)	797
PagI	TCATGA	1 cut(s)	987
PaqCI	CACCTGC	1 cut(s)	380
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PctI	GAATGC	1 cut(s)	812
PdmI	GAANNNNTTC	1 cut(s)	1868
PfeI	GAWTC	6 cut(s)	401, 830, 935, 1166, 1970, 1987
PflFI	GACNNNGTC	1 cut(s)	353
PkrI	GCNGC	8 cut(s)	275, 522, 617, 676, 811, 1188, 1651, 1777
PleI	GAGTC	5 cut(s)	290, 338, 453, 1702, 1841
PmeI	GTTTAAAC	1 cut(s)	1588
PpsI	GAGTC	5 cut(s)	290, 338, 453, 1702, 1841
PshBI	ATTAAT	1 cut(s)	1467
PsiI	TTATAA	1 cut(s)	1676
Psp124BI	GAGCTC	1 cut(s)	1261
Psp6I	CCWGG	1 cut(s)	1232
PspGI	CCWGG	1 cut(s)	1232
PspN4I	GGNNCC	1 cut(s)	1965
PspPI	GGNCC	4 cut(s)	162, 522, 1743, 2064
PstNI	CAGNNNCTG	1 cut(s)	1973
PsuI	RGATCY	1 cut(s)	1752
PsyI	GACNNNGTC	1 cut(s)	353
RsaI	GTAC	5 cut(s)	611, 983, 1130, 1404, 1660
RsaNI	GTAC	5 cut(s)	610, 982, 1129, 1403, 1659
RseI	CAYNNNNRTG	2 cut(s)	198, 797
SacI	GAGCTC	1 cut(s)	1261
SalI	GTCGAC	1 cut(s)	203
SaqAI	TTAA	9 cut(s)	480, 603, 1208, 1272, 1397, 1467, 1478, 1587, 1593
SatI	GCNGC	8 cut(s)	274, 521, 616, 675, 810, 1187, 1650, 1776
Sau3AI	GATC	6 cut(s)	499, 705, 1338, 1699, 1752, 1887
Sau96I	GGNCC	4 cut(s)	162, 522, 1743, 2064
SchI	GAGTC	5 cut(s)	290, 338, 454, 1703, 1841
ScrFI	CCNGG	1 cut(s)	1234
SduI	GDGCHC	1 cut(s)	1261
SfaNI	GCATC	3 cut(s)	285, 967, 1299
SinI	GGWCC	2 cut(s)	162, 2064
SmiMI	CAYNNNNRTG	2 cut(s)	198, 797
SmlI	CTYRAG	1 cut(s)	2011
SmoI	CTYRAG	1 cut(s)	2011
SspMI	CTAG	3 cut(s)	1145, 1706, 1907
SstI	GAGCTC	1 cut(s)	1261
StyD4I	CCNGG	1 cut(s)	1232
TaaI	ACNGT	1 cut(s)	491
TaiI	ACGT	4 cut(s)	381, 425, 1022, 1176
TaqII	GACCGA	1 cut(s)	1334
TatI	WGTACW	2 cut(s)	981, 1128
TauI	GCSGC	4 cut(s)	523, 618, 812, 1189
TfiI	GAWTC	6 cut(s)	401, 830, 935, 1166, 1970, 1987
Tru1I	TTAA	9 cut(s)	480, 603, 1208, 1272, 1397, 1467, 1478, 1587, 1593
Tru9I	TTAA	9 cut(s)	480, 603, 1208, 1272, 1397, 1467, 1478, 1587, 1593
TscAI	CASTG	3 cut(s)	456, 532, 1900
TseFI	GTSAC	2 cut(s)	1447, 1555
TseI	GCWGC	4 cut(s)	273, 674, 1649, 1775
Tsp45I	GTSAC	2 cut(s)	1447, 1555
TspDTI	ATGAA	3 cut(s)	669, 791, 1944
TspGWI	ACGGA	2 cut(s)	230, 698
TspRI	CASTG	3 cut(s)	456, 532, 1900
Tth111I	GACNNNGTC	1 cut(s)	353
VpaK11BI	GGWCC	2 cut(s)	162, 2064
VspI	ATTAAT	1 cut(s)	1467
XagI	CCTNNNNNAGG	1 cut(s)	1533
XapI	RAATTY	3 cut(s)	820, 1427, 1807
XceI	RCATGY	2 cut(s)	556, 1824
XmiI	GTMKAC	2 cut(s)	204, 1845
XmnI	GAANNNNTTC	1 cut(s)	1868
XspI	CTAG	3 cut(s)	1145, 1706, 1907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.