Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0006735

Physical Location & Seq

Genomic Coordinates Reverse (-)

9852951 .. 9854999

Gene Structure 2049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g17250.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2049 bp

ATGTACCTCACAACTCTACCCTCACCCAAAACCCCAATCACCCCCAAAACCCTAACCATCCCCCTCACCTTCTTCTTCACACACTACTCCACCTCAGCCTCTCACCTCGACCAAATCAGCGTAGACAACACACCCTACTGGACCAAAACCATCCACCACCTCTGCACCCGCCACCGCAATGTCGACCAAGCCCTCCACCTCCTCGACCACCTCCACCTCCGTGGCTACCGCCCCGTCCCCCTCAACCTCACCTCCATCGTACACGCTCTCTGCGACTCCCACCGCTTCGACGAAGCCCACCACCGCTTTGCCAACTCCATCCACTCCGATTGCGTCCCTGACCAGCGCACTTGCAACGTCATCATCGCTCGCCTCCTCGATTCCCAAACCCCGCACACCACCTTAAATGTTCTTCGCCTCTTGAGTCATTTAAAGCCTGATTTCGTTGCCTCTTTGGTCAATTACAACCGTCTGATGGATCAGCTCTGCTCGCTCCGGCGGCCCAGTGAGGCTCATACAGTACTATTTGATATGATGAGCAGAGGGCATTGCCCGAATGCGGTTTCCTATACAACGTTGATCAATGGGTACTGCGGAATGGGCGAGTTAAGTCATGCACACAAGGTGTTTGATGAAATGTGTGAGAGAGAAGTAGCGCCTAATTCGATGACTTATAGTGTTTTGATTAGTGGAGTTCTTCGGAAGCGGGATATTCGGGGTGCGGTGGAAATGATGGGGAAGTTATGGGAGGCAATGAAGGGTGAAGATGACACTCTTGTGAAAAATGCTGCTTTTTCGAATTTGATTGAGTCCATGTGTAGAGAAGGGTATTTTCAAGAAGTTTTCGGTATTGCGGAAGATAGGCCGCAGGGGGAGAGTGTGAATGAGGAGTTTGCTTATGGGCAGATGATCGATTCGCTTTGTAAAGCCGGAAGATATCATGGGGCGTCGAGGATTGTGTACATCATGAGGCATAGAGGGTTTGTGCCACGCGTAACGTCGTATAATTGTATTGTGCATGGACTGACCAAGGAAGGAGAGGGAGGTGTTATGAGGGCTTACCAGTTGTTAGAGGAAGGAATTGAGTTTGGTTACTTGCCGTCGGAGTACACTTACAAGGTTCTAGTGGAAGGTCTGTGCCAAGAATCAGACGTTGACAAGGCGTGGCAAGTTCTTCAATATATGTTGAGGAAGGAAAGAGTGGACAAAACCAGGATGTATAATATATATTTGAGAGCTCTGTGTCTTGCTAATAACACTACTGAGCTCTTGAACACGCTTGTTTCGATGCTCCAGACAGAATGTCAGCCTGATGTGATCACGCTGAACATTGTTGTCAATGGGTTCTGCAAGATGGGGAGAGTGGAAGAAGCTTTAAAGGTACTGGATGATATGATGACCGGAAAATTTTGCGCGCCAAATGTAGTGACCTTCACAACTATCATAAATGGTTTGTTAAATGTTGGTAGAACGCAAGAAGCTCTTTATATACTGCATGATGTGATGCCTCAGAAAGGTTTTCGCCCTAATGTTGTGACATATAATGCTGTTCTTCGTGGTTTGTTCAAACTTGATCAAGGAAAGCAAGCAATGGAGATTTTTAATGGCATGGTAACTGAGGGTGTGGCTGCTAGCAGTACCACTTACACTATTATTATTGATGGGTTATGTGAGTCTGATCAGCTAGAAGAGGCTAAAAGGTTTTGGGATGACGTTATTTGGCCCTCACAGATCCATGACAATTTTGTATATGCGGCCATCATCAAAGGGATCTGCCATTCAGGAAATTTTGATGAGGCATGTCATTTCCTTTACGAACTTGTAGACTCTGGGGTCTCTCCGAATATATTCAGTTACAACATTGTGATCGACACTGCTTGCAAATTAGGTCTCAAGAAAGAGGCCTATGAAGTCGTAAGAGAGATGAAAAGAAATGGGTTGTCTCCAGATTCTGTAACATGGAGGATTCTTGATAAGTTTCATGGGAATGCAAGGAAAGAATTTGGGGATGATGAGGATTCACAATCAAGAAGTCGACCGCATGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

683

Amino Acids

77.38

Weight (kDa)

6.16

Isoelectric Point (pI)

35.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	152 - 198	7.9e-11	PPR repeat family
PPR_3	PF13812	174 - 230	5.1e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	181 - 213	9.8e-12	PPR repeat
PPR_2	PF13041	185 - 232	1.3e-16	PPR repeat family
PPR	PF01535	188 - 217	1.8e-07	PPR repeat
PPR_2	PF13041	330 - 381	9.4e-07	PPR repeat family
PPR_1	PF12854	364 - 395	6.1e-07	PPR repeat
PPR_2	PF13041	406 - 451	6.6e-07	PPR repeat family
PPR_1	PF12854	434 - 465	6.4e-13	PPR repeat
PPR_2	PF13041	437 - 486	8.1e-14	PPR repeat family
PPR	PF01535	440 - 466	3.6e-06	PPR repeat
PPR_3	PF13812	471 - 518	1.1e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	473 - 523	2.1e-12	PPR repeat family
PPR_3	PF13812	501 - 554	2.7e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	509 - 557	4.1e-15	PPR repeat family
PPR_long	PF17177	528 - 652	4e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	580 - 628	4.1e-10	PPR repeat family
PPR_3	PF13812	604 - 656	5.2e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	611 - 643	2e-08	PPR repeat
PPR_2	PF13041	615 - 657	7.1e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0006735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18020
fragaria_vesca	FvH4_5g17250
malus_domestica	MD06G1231100.v1.1
prunus_persica	Prupe.5G232400_v2.0.a1
pyrus_communis	pycom06g20240
rosa_chinensis	RchiOBHm_Chr7g0178541
rosa_laevigata	RLG00000005439 RLG00000010173
rosa_multiflora	Rmu_sc0000775.1_g000015 Rmu_sc0000961.1_g000015 Rmu_sc0002421.1_g000004 Rmu_sc0003637.1_g000006 Rmu_sc0011483.1_g000001 Rmu_sc0016060.1_g000005 Rmu_ssc0000343.1_g000033
rosa_roxburghii	Rroxscaffold_3G00274830 Rroxscaffold_5G00333820
rosa_rugosa	Rorug06G0417900
rosa_samantha	Rh3CG367500 Rh4AG426400 Rh4DG434700 Rh7AG016400 Rh7BG015900 Rh7CG016600 Rh7DG016500
rosa_wichuraiana	Rw7G001300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1832
AccI	GTMKAC	4 cut(s)	123, 183, 1824, 2035
AccII	CGCG	2 cut(s)	993, 1415
AclI	AACGTT	1 cut(s)	575
AclWI	GGATC	3 cut(s)	486, 1726, 1778
AcoI	YGGCCR	1 cut(s)	1755
AcsI	RAATTY	4 cut(s)	799, 1406, 1786, 2000
AcyI	GRCGYC	1 cut(s)	947
AdeI	CACNNNGTG	1 cut(s)	625
AfaI	GTAC	8 cut(s)	5, 261, 522, 590, 962, 1109, 1383, 1639
AfiI	CCNNNNNNNGG	3 cut(s)	475, 559, 1514
AflIII	ACRYGT	1 cut(s)	991
AgsI	TTSAA	4 cut(s)	836, 1178, 1273, 1567
AhdI	GACNNNNNGTC	1 cut(s)	1302
AjnI	CCWGG	1 cut(s)	1211
AleI	CACNNNNGTG	2 cut(s)	219, 776
AluBI	AGCT	6 cut(s)	484, 1238, 1267, 1373, 1481, 1684
AluI	AGCT	6 cut(s)	484, 1238, 1267, 1373, 1481, 1684
Alw21I	GWGCWC	2 cut(s)	1240, 1269
Alw26I	GTCTC	3 cut(s)	1840, 1895, 1947
AlwI	GGATC	3 cut(s)	486, 1726, 1778
AlwNI	CAGNNNCTG	1 cut(s)	1952
AoxI	GGCC	5 cut(s)	500, 863, 1721, 1755, 1902
ApeKI	GCWGC	2 cut(s)	788, 1628
ApoI	RAATTY	4 cut(s)	799, 1406, 1786, 2000
Asp700I	GAANNNNTTC	1 cut(s)	1847
AspLEI	GCGC	4 cut(s)	348, 658, 1415, 1417
AspS9I	GGNCC	3 cut(s)	141, 501, 1722
AsuHPI	GGTGA	6 cut(s)	15, 31, 58, 95, 241, 773
AsuII	TTCGAA	1 cut(s)	797
AsuNHI	GCTAGC	1 cut(s)	1631
AvaII	GGWCC	1 cut(s)	141
BanII	GRGCYC	2 cut(s)	1240, 1269
Bbv12I	GWGCWC	2 cut(s)	1240, 1269
BbvCI	CCTCAGC	1 cut(s)	94
BbvI	GCAGC	2 cut(s)	775, 1615
BccI	CCATC	9 cut(s)	65, 158, 263, 326, 469, 727, 1348, 1655, 1766
BceAI	ACGGC	1 cut(s)	1084
BciT130I	CCWGG	1 cut(s)	1213
BclI	TGATCA	4 cut(s)	579, 1317, 1573, 1678
BcoDI	GTCTC	3 cut(s)	1840, 1895, 1947
BfaI	CTAG	3 cut(s)	1124, 1632, 1685
BfoI	RGCGCY	1 cut(s)	659
BisI	GCNGC	5 cut(s)	500, 789, 866, 1629, 1755
BlsI	GCNGC	5 cut(s)	501, 790, 867, 1630, 1756
BmcAI	AGTACT	1 cut(s)	522
Bme1390I	CCNGG	1 cut(s)	1213
Bme18I	GGWCC	1 cut(s)	141
BmeRI	GACNNNNNGTC	1 cut(s)	1302
BmgT120I	GGNCC	3 cut(s)	141, 501, 1722
BmrFI	CCNGG	1 cut(s)	1213
BmrI	ACTGGG	1 cut(s)	498
BmsI	GCATC	2 cut(s)	1278, 1494
BmtI	GCTAGC	1 cut(s)	1635
BmuI	ACTGGG	1 cut(s)	498
BpmI	CTGGAG	2 cut(s)	1277, 1929
Bpu10I	CCTNAGC	1 cut(s)	94
Bpu14I	TTCGAA	1 cut(s)	797
BpuEI	CTTGAG	2 cut(s)	442, 1877
Bsa29I	ATCGAT	1 cut(s)	912
BsaHI	GRCGYC	1 cut(s)	947
BsaI	GGTCTC	2 cut(s)	1840, 1895
BsaJI	CCNNGG	2 cut(s)	220, 1029
BsaWI	WCCGGW	1 cut(s)	1400
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
Bsc4I	CCNNNNNNNGG	3 cut(s)	475, 559, 1514
Bse1I	ACTGG	4 cut(s)	143, 504, 1063, 1389
Bse3DI	GCAATG	4 cut(s)	184, 547, 759, 1596
BseBI	CCWGG	1 cut(s)	1213
BseCI	ATCGAT	1 cut(s)	912
BseDI	CCNNGG	2 cut(s)	220, 1029
BseGI	GGATG	7 cut(s)	57, 150, 318, 1221, 1393, 1714, 2014
BseLI	CCNNNNNNNGG	3 cut(s)	475, 559, 1514
BseMI	GCAATG	4 cut(s)	184, 547, 759, 1596
BseMII	CTCAG	4 cut(s)	108, 1254, 1523, 1608
BseNI	ACTGG	4 cut(s)	143, 504, 1063, 1389
BsePI	GCGCGC	1 cut(s)	1413
BseRI	GAGGAG	3 cut(s)	191, 365, 902
BseXI	GCAGC	2 cut(s)	775, 1615
BsgI	GTGCAG	1 cut(s)	148
Bsh1236I	CGCG	2 cut(s)	993, 1415
Bsh1285I	CGRYCG	1 cut(s)	2039
BshFI	GGCC	5 cut(s)	502, 865, 1723, 1757, 1904
BshVI	ATCGAT	1 cut(s)	912
BsiEI	CGRYCG	1 cut(s)	2039
BsiHKAI	GWGCWC	2 cut(s)	1240, 1269
BsiSI	CCGG	3 cut(s)	496, 930, 1401
BslFI	GGGAC	2 cut(s)	221, 320
BslI	CCNNNNNNNGG	3 cut(s)	475, 559, 1514
BsmAI	GTCTC	3 cut(s)	1840, 1895, 1947
BsmFI	GGGAC	2 cut(s)	221, 320
BsmI	GAATGC	2 cut(s)	562, 1993
BsnI	GGCC	5 cut(s)	502, 865, 1723, 1757, 1904
Bso31I	GGTCTC	2 cut(s)	1840, 1895
Bsp119I	TTCGAA	1 cut(s)	797
Bsp1286I	GDGCHC	2 cut(s)	1240, 1269
Bsp1407I	TGTACA	1 cut(s)	960
Bsp143I	GATC	9 cut(s)	478, 579, 909, 1317, 1573, 1678, 1731, 1770, 1866
BspANI	GGCC	5 cut(s)	502, 865, 1723, 1757, 1904
BspCNI	CTCAG	4 cut(s)	107, 1255, 1522, 1609
BspDI	ATCGAT	1 cut(s)	912
BspFNI	CGCG	2 cut(s)	993, 1415
BspHI	TCATGA	1 cut(s)	966
BspOI	GCTAGC	1 cut(s)	1635
BspPI	GGATC	3 cut(s)	486, 1726, 1778
BspT104I	TTCGAA	1 cut(s)	797
BspTNI	GGTCTC	2 cut(s)	1840, 1895
BsrDI	GCAATG	4 cut(s)	184, 547, 759, 1596
BsrGI	TGTACA	1 cut(s)	960
BsrI	ACTGG	4 cut(s)	143, 504, 1063, 1389
BssECI	CCNNGG	2 cut(s)	220, 1029
BssHII	GCGCGC	1 cut(s)	1413
BssMI	GATC	9 cut(s)	478, 579, 909, 1317, 1573, 1678, 1731, 1770, 1866
BssNI	GRCGYC	1 cut(s)	947
BssT1I	CCWWGG	1 cut(s)	1029
Bst2UI	CCWGG	1 cut(s)	1213
Bst4CI	ACNGT	2 cut(s)	470, 520
Bst6I	CTCTTC	1 cut(s)	1683
BstACI	GRCGYC	1 cut(s)	947
BstAUI	TGTACA	1 cut(s)	960
BstBI	TTCGAA	1 cut(s)	797
BstC8I	GCNNGC	6 cut(s)	370, 491, 1415, 1587, 1633, 1879
BstDEI	CTNAG	4 cut(s)	94, 1263, 1509, 1617
BstDSI	CCRYGG	1 cut(s)	220
BstENI	CCTNNNNNAGG	1 cut(s)	1512
BstF5I	GGATG	7 cut(s)	57, 150, 318, 1221, 1393, 1714, 2014
BstFNI	CGCG	2 cut(s)	993, 1415
BstH2I	RGCGCY	1 cut(s)	659
BstHHI	GCGC	4 cut(s)	348, 658, 1415, 1417
BstKTI	GATC	9 cut(s)	481, 582, 912, 1320, 1576, 1681, 1734, 1773, 1869
BstMAI	GTCTC	3 cut(s)	1840, 1895, 1947
BstMBI	GATC	9 cut(s)	478, 579, 909, 1317, 1573, 1678, 1731, 1770, 1866
BstMCI	CGRYCG	1 cut(s)	2039
BstMWI	GCNNNNNNNGC	3 cut(s)	490, 499, 600
BstNI	CCWGG	1 cut(s)	1213
BstNSI	RCATGY	1 cut(s)	1803
BstSCI	CCNGG	1 cut(s)	1211
BstUI	CGCG	2 cut(s)	993, 1415
BstV1I	GCAGC	2 cut(s)	775, 1615
BstX2I	RGATCY	2 cut(s)	1731, 1770
BstXI	CCANNNNNNTGG	1 cut(s)	221
BstYI	RGATCY	2 cut(s)	1731, 1770
Bsu15I	ATCGAT	1 cut(s)	912
BsuRI	GGCC	5 cut(s)	502, 865, 1723, 1757, 1904
BsuTUI	ATCGAT	1 cut(s)	912
BtgI	CCRYGG	1 cut(s)	220
BtgZI	GCGATG	1 cut(s)	349
BtsCI	GGATG	7 cut(s)	57, 150, 318, 1221, 1393, 1714, 2014
BtsI	GCAGTG	1 cut(s)	1872
BtsIMutI	CAGTG	2 cut(s)	511, 1872
Cac8I	GCNNGC	6 cut(s)	370, 491, 1415, 1587, 1633, 1879
CaiI	CAGNNNCTG	1 cut(s)	1952
CciI	TCATGA	1 cut(s)	966
CfoI	GCGC	4 cut(s)	348, 658, 1415, 1417
Cfr13I	GGNCC	3 cut(s)	141, 501, 1722
ClaI	ATCGAT	1 cut(s)	912
CseI	GACGC	2 cut(s)	322, 936
Csp6I	GTAC	8 cut(s)	4, 260, 521, 589, 961, 1108, 1382, 1638
CspCI	CAANNNNNGTGG	2 cut(s)	311, 346
CviQI	GTAC	8 cut(s)	4, 260, 521, 589, 961, 1108, 1382, 1638
DdeI	CTNAG	4 cut(s)	94, 1263, 1509, 1617
DpnI	GATC	9 cut(s)	480, 581, 911, 1319, 1575, 1680, 1733, 1772, 1868
DpnII	GATC	9 cut(s)	478, 579, 909, 1317, 1573, 1678, 1731, 1770, 1866
DraI	TTTAAA	2 cut(s)	432, 1377
DraIII	CACNNNGTG	1 cut(s)	625
DrdI	GACNNNNNNGTC	1 cut(s)	1832
DriI	GACNNNNNGTC	1 cut(s)	1302
DseDI	GACNNNNNNGTC	1 cut(s)	1832
EaeI	YGGCCR	1 cut(s)	1755
Eam1104I	CTCTTC	1 cut(s)	1683
Eam1105I	GACNNNNNGTC	1 cut(s)	1302
EarI	CTCTTC	1 cut(s)	1683
Ecl136II	GAGCTC	2 cut(s)	1238, 1267
Eco130I	CCWWGG	1 cut(s)	1029
Eco147I	AGGCCT	1 cut(s)	1904
Eco24I	GRGCYC	2 cut(s)	1240, 1269
Eco31I	GGTCTC	2 cut(s)	1840, 1895
Eco32I	GATATC	1 cut(s)	938
Eco47I	GGWCC	1 cut(s)	141
Eco53kI	GAGCTC	2 cut(s)	1238, 1267
EcoICRI	GAGCTC	2 cut(s)	1238, 1267
EcoNI	CCTNNNNNAGG	1 cut(s)	1512
EcoRII	CCWGG	1 cut(s)	1211
EcoRV	GATATC	1 cut(s)	938
EcoT14I	CCWWGG	1 cut(s)	1029
EcoT38I	GRGCYC	2 cut(s)	1240, 1269
ErhI	CCWWGG	1 cut(s)	1029
FalI	AAGNNNNNCTT	2 cut(s)	1467, 1499
FaqI	GGGAC	2 cut(s)	221, 320
FauI	CCCGC	3 cut(s)	176, 399, 699
FbaI	TGATCA	4 cut(s)	579, 1317, 1573, 1678
FblI	GTMKAC	4 cut(s)	123, 183, 1824, 2035
Fnu4HI	GCNGC	5 cut(s)	500, 789, 866, 1629, 1755
FokI	GGATG	7 cut(s)	44, 137, 305, 1228, 1400, 1721, 2021
FriOI	GRGCYC	2 cut(s)	1240, 1269
Fsp4HI	GCNGC	5 cut(s)	500, 789, 866, 1629, 1755
FspBI	CTAG	3 cut(s)	1124, 1632, 1685
GlaI	GCGC	4 cut(s)	347, 657, 1414, 1416
GluI	GCNGC	5 cut(s)	500, 789, 866, 1629, 1755
GsuI	CTGGAG	2 cut(s)	1277, 1929
HaeII	RGCGCY	1 cut(s)	659
HaeIII	GGCC	5 cut(s)	502, 865, 1723, 1757, 1904
HapII	CCGG	3 cut(s)	496, 930, 1401
HgaI	GACGC	2 cut(s)	322, 936
HhaI	GCGC	4 cut(s)	348, 658, 1415, 1417
Hin1I	GRCGYC	1 cut(s)	947
Hin6I	GCGC	4 cut(s)	346, 656, 1413, 1415
HinP1I	GCGC	4 cut(s)	346, 656, 1413, 1415
HincII	GTYRAC	3 cut(s)	184, 1156, 2036
HindII	GTYRAC	3 cut(s)	184, 1156, 2036
HindIII	AAGCTT	1 cut(s)	1371
HpaII	CCGG	3 cut(s)	496, 930, 1401
HphI	GGTGA	6 cut(s)	15, 31, 58, 95, 241, 773
Hpy166II	GTNNAC	9 cut(s)	124, 184, 262, 961, 1110, 1156, 1204, 1825, 2036
Hpy188I	TCNGA	8 cut(s)	328, 474, 702, 1105, 1150, 1512, 1678, 1842
Hpy8I	GTNNAC	9 cut(s)	124, 184, 262, 961, 1110, 1156, 1204, 1825, 2036
Hpy99I	CGWCG	4 cut(s)	293, 952, 1003, 1105
HpyAV	CCTTC	8 cut(s)	79, 751, 818, 1028, 1070, 1124, 1186, 1441
HpyCH4III	ACNGT	2 cut(s)	470, 520
HpyCH4IV	ACGT	5 cut(s)	357, 575, 998, 1152, 1713
HpyCH4V	TGCA	8 cut(s)	165, 354, 617, 1018, 1350, 1495, 1881, 1991
HpyF10VI	GCNNNNNNNGC	3 cut(s)	490, 499, 600
HpyF3I	CTNAG	4 cut(s)	94, 1263, 1509, 1617
HpySE526I	ACGT	5 cut(s)	357, 575, 998, 1152, 1713
Hsp92I	GRCGYC	1 cut(s)	947
HspAI	GCGC	4 cut(s)	346, 656, 1413, 1415
Ksp22I	TGATCA	4 cut(s)	579, 1317, 1573, 1678
Kzo9I	GATC	9 cut(s)	478, 579, 909, 1317, 1573, 1678, 1731, 1770, 1866
LmnI	GCTCC	2 cut(s)	498, 1296
Lsp1109I	GCAGC	2 cut(s)	775, 1615
LweI	GCATC	2 cut(s)	1278, 1494
MaeI	CTAG	3 cut(s)	1124, 1632, 1685
MaeII	ACGT	5 cut(s)	357, 575, 998, 1152, 1713
MaeIII	GTNAC	7 cut(s)	994, 1091, 1426, 1534, 1612, 1853, 1954
MalI	GATC	9 cut(s)	480, 581, 911, 1319, 1575, 1680, 1733, 1772, 1868
MboI	GATC	9 cut(s)	478, 579, 909, 1317, 1573, 1678, 1731, 1770, 1866
MflI	RGATCY	2 cut(s)	1731, 1770
MhlI	GDGCHC	2 cut(s)	1240, 1269
MluI	ACGCGT	1 cut(s)	991
MlyI	GAGTC	5 cut(s)	269, 433, 818, 1682, 1820
MmeI	TCCRAC	1 cut(s)	1083
MroXI	GAANNNNTTC	1 cut(s)	1847
MseI	TTAA	6 cut(s)	404, 431, 608, 1376, 1457, 1602
MslI	CAYNNNNRTG	4 cut(s)	177, 219, 776, 1986
MspI	CCGG	3 cut(s)	496, 930, 1401
MspR9I	CCNGG	1 cut(s)	1213
Mva1269I	GAATGC	2 cut(s)	562, 1993
MvaI	CCWGG	1 cut(s)	1213
MvnI	CGCG	2 cut(s)	993, 1415
MwoI	GCNNNNNNNGC	3 cut(s)	490, 499, 600
NdeII	GATC	9 cut(s)	478, 579, 909, 1317, 1573, 1678, 1731, 1770, 1866
NheI	GCTAGC	1 cut(s)	1631
NmuCI	GTSAC	2 cut(s)	1426, 1534
NspI	RCATGY	1 cut(s)	1803
NspV	TTCGAA	1 cut(s)	797
OliI	CACNNNNGTG	2 cut(s)	219, 776
PagI	TCATGA	1 cut(s)	966
PauI	GCGCGC	1 cut(s)	1413
PceI	AGGCCT	1 cut(s)	1904
PcsI	WCGNNNNNNNCGW	2 cut(s)	270, 1283
PctI	GAATGC	2 cut(s)	562, 1993
PdmI	GAANNNNTTC	1 cut(s)	1847
PfeI	GAWTC	6 cut(s)	380, 914, 1145, 1949, 1966, 2018
PkrI	GCNGC	5 cut(s)	501, 790, 867, 1630, 1756
PleI	GAGTC	5 cut(s)	269, 432, 817, 1681, 1820
PpsI	GAGTC	5 cut(s)	269, 432, 817, 1681, 1820
Psp124BI	GAGCTC	2 cut(s)	1240, 1269
Psp1406I	AACGTT	1 cut(s)	575
Psp6I	CCWGG	1 cut(s)	1211
PspGI	CCWGG	1 cut(s)	1211
PspPI	GGNCC	3 cut(s)	141, 501, 1722
PstNI	CAGNNNCTG	1 cut(s)	1952
PsuI	RGATCY	2 cut(s)	1731, 1770
PteI	GCGCGC	1 cut(s)	1413
RsaI	GTAC	8 cut(s)	5, 261, 522, 590, 962, 1109, 1383, 1639
RsaNI	GTAC	8 cut(s)	4, 260, 521, 589, 961, 1108, 1382, 1638
RseI	CAYNNNNRTG	4 cut(s)	177, 219, 776, 1986
SacI	GAGCTC	2 cut(s)	1240, 1269
SalI	GTCGAC	2 cut(s)	182, 2034
SaqAI	TTAA	6 cut(s)	404, 431, 608, 1376, 1457, 1602
SatI	GCNGC	5 cut(s)	500, 789, 866, 1629, 1755
Sau3AI	GATC	9 cut(s)	478, 579, 909, 1317, 1573, 1678, 1731, 1770, 1866
Sau96I	GGNCC	3 cut(s)	141, 501, 1722
ScaI	AGTACT	1 cut(s)	522
SchI	GAGTC	5 cut(s)	269, 433, 818, 1682, 1820
ScrFI	CCNGG	1 cut(s)	1213
SduI	GDGCHC	2 cut(s)	1240, 1269
SfaNI	GCATC	2 cut(s)	1278, 1494
SfuI	TTCGAA	1 cut(s)	797
SinI	GGWCC	1 cut(s)	141
SmiMI	CAYNNNNRTG	4 cut(s)	177, 219, 776, 1986
SmlI	CTYRAG	2 cut(s)	421, 1892
SmoI	CTYRAG	2 cut(s)	421, 1892
SseBI	AGGCCT	1 cut(s)	1904
SspMI	CTAG	3 cut(s)	1124, 1632, 1685
SstI	GAGCTC	2 cut(s)	1240, 1269
StuI	AGGCCT	1 cut(s)	1904
StyD4I	CCNGG	1 cut(s)	1211
StyI	CCWWGG	1 cut(s)	1029
TaaI	ACNGT	2 cut(s)	470, 520
TaiI	ACGT	5 cut(s)	360, 578, 1001, 1155, 1716
TatI	WGTACW	3 cut(s)	520, 960, 1107
TauI	GCSGC	3 cut(s)	502, 868, 1757
TfiI	GAWTC	6 cut(s)	380, 914, 1145, 1949, 1966, 2018
Tru1I	TTAA	6 cut(s)	404, 431, 608, 1376, 1457, 1602
Tru9I	TTAA	6 cut(s)	404, 431, 608, 1376, 1457, 1602
TscAI	CASTG	2 cut(s)	511, 1879
TseFI	GTSAC	2 cut(s)	1426, 1534
TseI	GCWGC	2 cut(s)	788, 1628
Tsp45I	GTSAC	2 cut(s)	1426, 1534
TspDTI	ATGAA	5 cut(s)	648, 770, 1923, 1940, 1970
TspGWI	ACGGA	1 cut(s)	209
TspRI	CASTG	2 cut(s)	511, 1879
VpaK11BI	GGWCC	1 cut(s)	141
XagI	CCTNNNNNAGG	1 cut(s)	1512
XapI	RAATTY	4 cut(s)	799, 1406, 1786, 2000
XceI	RCATGY	1 cut(s)	1803
XmiI	GTMKAC	4 cut(s)	123, 183, 1824, 2035
XmnI	GAANNNNTTC	1 cut(s)	1847
XspI	CTAG	3 cut(s)	1124, 1632, 1685
ZrmI	AGTACT	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.